Cdip009662.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- bab1
- Assembly
- GCA_949628265.1
- Location
- OX451261.1:23193055-23195070[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.5e-18 1e-14 54.0 0.0 1 43 28 71 28 73 0.95 2 2 0.89 1.7e+03 -1.1 0.9 6 15 164 173 163 177 0.88
Sequence Information
- Coding Sequence
- ATGTGGCAAAAGTGCTGGAACACAAATCAGAGCCTGGTGCACAACCTGCGGTTCCGCGAGCGCGGACCCCTCAAGTCGTGGCGACCGGAGACTATGGCTGAAGCCATCTTCTCGGTGCTTAAAGAGGGTCTTTCGCTGTCGCAGGCGGCCAGAAAGTACGACATCCCCTACCCGACCTTTGTCCTTTACGCTAATCGCGTGCACAACATGCTTGGACCCTCTGCCGATGGTGGAGCAGATCTGCGGCCAAAGGGTCGAGGTCGTCCGCAGCGCATTTTGCTCGGCGTATGGCCGGAGGAGCACATCCGAGGTGTGATTCGCGCCGTCGTATTCCGCGACCCTGCCCATATAAAGGAAGAGACGCAGACTTTGGCTAGACTGTACTGCATGCAGGACCCGATGCAGCAGCAGTACCCCAACCTGGCACCCAACGGCTCCATCCCTGACGGCGGCAGCCGCTCAGTCACCCCGACGCCCAGTTctgcggcggccgccgccgtggCCGCGGTAGCCCAGGGTCTGAGGCAGCAAATGTGCGGCCTGGCGGCCCCTGGAAGCGAGGCCGGCGGCCAGCAAGCACCATCGAgcgcagcggtggcggcgctgGCGTCGGCGCTGCTCGGCCGCGACGCTGACAACATGCACCAGGCGGCCGCGGCCCTCAACAACAACACGATGAACGCTCTGCTGAACAACGGCTCGGGCACCGGCCTCCGCGGCCACGCCAACAGTATGGCCGCCCTCTCAGGCATGGCCTCGTACAAGCAGCACTCGCTCTTTGGCCAGACGAGGGCTTCCGAGGGACTCTTCCAACAGGAGCCCGAGCAGGAGGAGCAGGCAGTCACCAAGAACAACCACCAGCACCACGCCATGGACGTCCACGATGATAACGACGTGCTCCAGCATCAGGTCAAGACCATGGACGTGTCGGCTGCGGTTTTGGACGCGCGAGCTGAATGA
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPEEHIRGVIRAVVFRDPAHIKEETQTLARLYCMQDPMQQQYPNLAPNGSIPDGGSRSVTPTPSSAAAAAVAAVAQGLRQQMCGLAAPGSEAGGQQAPSSAAVAALASALLGRDADNMHQAAAALNNNTMNALLNNGSGTGLRGHANSMAALSGMASYKQHSLFGQTRASEGLFQQEPEQEEQAVTKNNHQHHAMDVHDDNDVLQHQVKTMDVSAAVLDARAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01046172;
- 90% Identity
- -
- 80% Identity
- -