Choo005104.1
Basic Information
- Insect
- Clitarchus hookeri
- Gene Symbol
- -
- Assembly
- None
- Location
- NQII01002396.1:318632-343566[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.00074 2.5 7.5 0.1 19 44 170 195 163 200 0.84 2 5 0.0034 12 5.4 0.0 21 44 200 223 196 227 0.86 3 5 0.00038 1.3 8.4 0.0 21 52 228 259 225 261 0.86 4 5 0.031 1.1e+02 2.3 0.1 21 44 256 279 254 284 0.87 5 5 0.00042 1.4 8.3 0.0 21 46 284 309 281 316 0.84
Sequence Information
- Coding Sequence
- ATGCGACTTTGGTGCGGTAGTGTATTACGTGATTCAAGTATGACAAGAAAGGCTAAGACGAAGAATGTTGGTGGAGCTAAGGCAGTCATGGAAACCAGAGAGCAGAAGGGGACCACATCACAGCAAGTGTCGCTAACTACTGATTCAGATGTCGAGGAAGAGGAAAAGgaAGCGGTAAATTCAGTAACTGCTGCAGATTCCAAGAATCGAAGCTGCGTGCAAGACTTGTTGCTGATGCGCATCCCAAAGATCAAGGAAGAATTGGAAACTGATGAGGAAAGGCAGTTGCGGATATTCGCAGACGAGTGCAGGGGTGCGGTGCGGCCAGCTGGCGAGGAGCCACTTAACCTTGTGGTTCGGGGCTCAGCAGGAGATCCCCGGCCTGTCTTCGAGGAGGTGGCCATTCCCGAGGATGAGGCTGGCGATGCTGACTACTGCTCCCCGTTGGCCGTGGGGAGAAAACTGTCAAAGTGCCTGGTGTGCGTGTCGCGCCGGAAGAGGTTGGAGGGCTCCTCAGACAAGCAGTTCGGCTGCCCTGTGTGCCCGGCCAAATTTACCCAGAAGTGCCACGTGAAACGCCACATGCTCACCCACACAGGGGAGCGGCCGTTCCTGTGCCCTGTGTGCGGTGCCAAGTTTGCGTTGAACTGCAACTTCAAGAACCACATGCTGATCCACACAGGGGAGAAGCCCATGTCGTGCTCGGTGTGCGGGGCAAGGTTCATGCGCGCCAGCAACCTCAAGGAACACATGCTGTTCCACAGTAGCGTTAAGCCATACCAGTGCACGGTGTGCGAGGCGAGGTTCACCCTCAAGAGCCACCTCAAGCGACATGTGTTCACTCACACCGGGGAGAAGCCGTTCGCCTGCCCCGTGTGTGGGGCCAGGTTCTCGCGCCATGGCAACGTCAAGGACCACATGAAAACCCACACGGGGGAAAAGCCATTTGACTGCATCGTGTGCGGGTCCAAGTTTGCCCGCCGCAGCCACGTCAAAGAACACATGCTCACCCACCGGGGAAAGTCGTTGCAGGGTGTTGACTGA
- Protein Sequence
- MRLWCGSVLRDSSMTRKAKTKNVGGAKAVMETREQKGTTSQQVSLTTDSDVEEEEKEAVNSVTAADSKNRSCVQDLLLMRIPKIKEELETDEERQLRIFADECRGAVRPAGEEPLNLVVRGSAGDPRPVFEEVAIPEDEAGDADYCSPLAVGRKLSKCLVCVSRRKRLEGSSDKQFGCPVCPAKFTQKCHVKRHMLTHTGERPFLCPVCGAKFALNCNFKNHMLIHTGEKPMSCSVCGARFMRASNLKEHMLFHSSVKPYQCTVCEARFTLKSHLKRHVFTHTGEKPFACPVCGARFSRHGNVKDHMKTHTGEKPFDCIVCGSKFARRSHVKEHMLTHRGKSLQGVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00343780;
- 90% Identity
- iTF_00343780;
- 80% Identity
- iTF_00343780;