Choo001425.1
Basic Information
- Insect
- Clitarchus hookeri
- Gene Symbol
- -
- Assembly
- None
- Location
- NQII01004874.1:12678-30305[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.3 8e+03 -3.7 0.1 39 46 143 150 139 155 0.74 2 10 0.029 1e+02 2.4 0.1 21 47 187 213 181 218 0.80 3 10 0.00063 2.2 7.7 0.0 21 44 215 238 212 243 0.91 4 10 0.00023 0.79 9.1 0.1 21 47 243 269 240 274 0.85 5 10 0.00015 0.52 9.7 0.1 21 44 271 294 269 298 0.91 6 10 0.0016 5.5 6.4 0.4 21 47 299 325 294 330 0.85 7 10 7.7e-05 0.26 10.7 0.2 21 51 327 357 323 359 0.86 8 10 0.034 1.2e+02 2.2 0.1 21 48 355 382 350 388 0.80 9 10 0.21 7.1e+02 -0.3 0.0 21 46 383 408 378 415 0.84 10 10 0.15 5.1e+02 0.1 0.1 19 45 409 435 397 438 0.82
Sequence Information
- Coding Sequence
- ATGGATTTGTCAATACGTCGTCCGAGGGAAAGTTTCCTAGACTTGACCACTTCGGAAGTGAACGCGGCGTCCAGAAGTCCAGAGCCGCACTGCATCAAGCAGGGGTTGGAGGATGCTGCATTCGACACTTCTGGCTGCGAAGTCAAAGTAGAGGGGGACGATGGCGTGGAGCATCTTACATGTGAGGTGTCCCCCACCATTGGTCAGCAGTGGCAGGCTTTCGACATAAAAGATGATGGAGAGGATGACGACCCAAGCAGCGTTTATGGACTATACCCCTGCAGCGGCTGTGATATTGTCTTCACGAACGCTGCCTACATGGAGAAGCATGCGTGCAGAGGACAAAAGACTGTAGATGGCGGTGAGGAAGGTGATGGGAAGACGGTGGACCGCACGAAGAGGTTCGTGTGCCAGGTTTGTGGCAAGAAGTTTCGCCGTCATTACCACCTCACCGTGCATCAGAAGAATCACTCTGGCGTCAAGCAGTTTGGCTGCCTTCACTGCGGGAACAGGTTCTTTAGGAAAACAGATTTGACCGTTCACATGCGCATACACAGTGGCGAGAAGCCTTTCCAATGCACAATCTGTGGGGTGCGGTTCAACCAGAGATCTATACTCACAACGCACATTCGCATACACACGGGCGAGAAACCTTTCGGCTGCACCATGTGTTCGGAGAAGTTTCGCAAGAGTTCGTATCTTAAAAGACACATTCTAAGTCACACGGGCGAGAAACCTCACGAGTGCCCGGTTTGCGGTGCCAGGTTTCGGCTCAGCAACGTGTTCAAGGCACATTTCCGCATCCACACGGGTGAAAAGCCGTACGCGTGCGACGTTTGCAACAACCGCTTCAAGCAGAGCGCTGATCTGCGCGCGCACATTCGCACGCACACGGGTGAGAAGCCCTACTGCTGCACGATGTGTCCTGCCAAGTTCAGCCAAAACTCAGCCCTCAGGTCACATACGCGCATCCACACGGGTGAGAAACCCTACCAATGTCCCACGTGCGACATGAACTTCCGTCAGCGGTCGGACCTGAACCGCCACTCGTCCATCCACATGACTGAGAAACCGTTCTCGTGCAACTACTGCGATGCCAAGTTCAGCCAGCGGGTTCATCTGCTGAACCACATCCGCACTCACACAGGCGAGAAACCGTACGTGTGCAAACAGTGCGGAAAGGATTTTGGTCGCAGTTCAGCCCTCAGCAGGCACAAAAAAATGCACGACAGTGAGAATCCGTATAACTGTATAGAGTGCCCAATGAGGTTCAAACTGTCCGCTGATCTAGTGAAGCACGTACGAAGTGcacacaagtaa
- Protein Sequence
- MDLSIRRPRESFLDLTTSEVNAASRSPEPHCIKQGLEDAAFDTSGCEVKVEGDDGVEHLTCEVSPTIGQQWQAFDIKDDGEDDDPSSVYGLYPCSGCDIVFTNAAYMEKHACRGQKTVDGGEEGDGKTVDRTKRFVCQVCGKKFRRHYHLTVHQKNHSGVKQFGCLHCGNRFFRKTDLTVHMRIHSGEKPFQCTICGVRFNQRSILTTHIRIHTGEKPFGCTMCSEKFRKSSYLKRHILSHTGEKPHECPVCGARFRLSNVFKAHFRIHTGEKPYACDVCNNRFKQSADLRAHIRTHTGEKPYCCTMCPAKFSQNSALRSHTRIHTGEKPYQCPTCDMNFRQRSDLNRHSSIHMTEKPFSCNYCDAKFSQRVHLLNHIRTHTGEKPYVCKQCGKDFGRSSALSRHKKMHDSENPYNCIECPMRFKLSADLVKHVRSAHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00343756;
- 90% Identity
- iTF_00343756;
- 80% Identity
- iTF_00343756;