Choo005216.1
Basic Information
- Insect
- Clitarchus hookeri
- Gene Symbol
- -
- Assembly
- None
- Location
- NQII01002623.1:321501-352461[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-10 7.8e-07 27.9 0.0 10 72 410 470 402 474 0.80
Sequence Information
- Coding Sequence
- CTGCAGTGCGTGTCTGCTGTATGCTGTGTGTTGGTTGAGCGAGTGCAGTGCGAGATGGAAGACGGGCGAGCCCCTGACTGCGGGAAAGAGGACAGCGAGTGCTCCGGGGACTCGTGCAAGACGGCCGGGTCTAGTGGCCGACAGGAAACGCAGTCAGGTTTGGCTGCGGTGGGCGAGAAGCTGAGGAGACTGCACAACGGCGAGCCGGAGCGTGTGTCCTCGGACGAGGAGTGCGTGGTCGAGGTTAGCGCGAGCAAGGTCGGGGCGCAGCCCGAGGACAACGACGACACGGAGAAGGAGTCCGTGGACTCGGAGGAGGAGCTGAAGCTGCAGGTGGACGTGGACGTGTCGTCAGACGAGCAGGTGGCTCACGAGCGCGAGGTGATAGAGCTGAGCGCGGGAGAGGACGATGACTGCGAGGTGCTGGAGATCAAGCCCAAGGTGGAGAAGAGCGACGTGCAGGAGGGGGCCGCCGCCCGGGAGAACGACAGCGCGGTGGAGGTGGTCGACATAGACGACAGTGGCGAGCTGGACGAGCTGCAGATAGACGACAAGGCCGAGGAGGAAGAGACCGGGCCTGAGGCGGTGTGCGCCGCCGTGAAGGAGGACGAGGATGTGGAGGAAACTGAAGAGAAAGCAGAGGACCAAGAAGAGAGGGAAGTAGCTGTTGAAGAGCCGTCGGAGGCCGCAGTTGAAGGCAGGCTGGAGTACGCGGAGGACGAGCAGGAGGAGAAGGCAGTCGACGAAAGGGAGAGAAGTGATCCGTGCGACGCCGTAGGTTCATCTGGTGCGGACGTAGAAGACGCCCCCGGGGCCAGGATGGACCGCGCGGGGGCGGAGGAGCCGCGGACAGTGCAGCCCGGGGCCCGTGACGACACGTGCGCGGAGGGAGACAGTTCAGACACACTGTCCGATCCTGAATGTTTTGTTGGCTTCGAGCCTTCTCAACCACATTCCTTTGAAAAGGAATCTCACCAAGCCGATGGCTCGGAGGGTGAGTTGCTGGGCACGCTATACGTCACCGCAGACTCGCACTACTTCGTGGTGGAGGGAGCAGAAGGCCCTGCCCCCACCAGCGGCAGTGAGGCCGGGGACTTGAGTCGCTTCAGTCCAGcgCCAACGGAGAGCTCGCGATGCAACAGCCCGTCAGTGAGCTCTGTCAGCGGGGAGAGACGCACTGGCAGGAAGAGAAACTTGCAGGACGCCAAAAACCCCATATACATGAAGCCTTTCGAGTTCGGCTGGAAGCGCGAGCTGGTGTATCGCAGCTCCATGGACTCGTCCAGCAGGCGCATGGCCGACGTATACTATTACACTCCCACCAATAGGAAGGTGCGCTCTGCTCGCGAGGTGCTCGACCATGTGGATGGGGTCGAGCTCACCATCAAGAACTTCCTGTTTGCCAAGGAGCCCATGGGTCTCGACTGCTCCAAGGAGACCATCCGCGATGCCAGGAAGAGCTTCAACCTCAGGGATACTCCGGTGTTGAAGGACGTCAGGGAGGACGAGGAGGCGTCGCCACCCACGACCAAGTCCCCGGAGAAGCAGAAGTCTCCCAAAGTGGCGGAGACGGCACCAACCCCTGTGGAACCCAAGTCTCCTCTGGGGCAGGCGGCCAACTCGTCTCCGCCGGCAGCAGTGCGCAAGGCTGCCGCCATGCCCACGTCCACGCCCACGCGCAGCTTCCCTCGCATCAAGGTGACGCCCACCAGGATGCAGCAGCAGAAGGTGGGCGCCGTAGGGAAGCGCTCATTGCCGCGCCCGCTGCTGCCCAAGCCTCGTGACCAAGAACTGGAGATGGGCATGTTGCCGCCGCTGTGGAGCGCCAAGGCCGTGACCCCCGCACCCAAGAAGGCCACCGTCTCCACCACCTGGTCCAGTACACCCAAGTGA
- Protein Sequence
- LQCVSAVCCVLVERVQCEMEDGRAPDCGKEDSECSGDSCKTAGSSGRQETQSGLAAVGEKLRRLHNGEPERVSSDEECVVEVSASKVGAQPEDNDDTEKESVDSEEELKLQVDVDVSSDEQVAHEREVIELSAGEDDDCEVLEIKPKVEKSDVQEGAAARENDSAVEVVDIDDSGELDELQIDDKAEEEETGPEAVCAAVKEDEDVEETEEKAEDQEEREVAVEEPSEAAVEGRLEYAEDEQEEKAVDERERSDPCDAVGSSGADVEDAPGARMDRAGAEEPRTVQPGARDDTCAEGDSSDTLSDPECFVGFEPSQPHSFEKESHQADGSEGELLGTLYVTADSHYFVVEGAEGPAPTSGSEAGDLSRFSPAPTESSRCNSPSVSSVSGERRTGRKRNLQDAKNPIYMKPFEFGWKRELVYRSSMDSSSRRMADVYYYTPTNRKVRSAREVLDHVDGVELTIKNFLFAKEPMGLDCSKETIRDARKSFNLRDTPVLKDVREDEEASPPTTKSPEKQKSPKVAETAPTPVEPKSPLGQAANSSPPAAVRKAAAMPTSTPTRSFPRIKVTPTRMQQQKVGAVGKRSLPRPLLPKPRDQELEMGMLPPLWSAKAVTPAPKKATVSTTWSSTPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -