Choo009655.1
Basic Information
- Insect
- Clitarchus hookeri
- Gene Symbol
- lrrfip2
- Assembly
- None
- Location
- NQII01000745.1:636944-661811[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.3e-110 6.5e-106 353.2 30.8 5 300 1 303 1 303 0.93 2 2 0.0013 14 4.1 4.4 120 173 301 354 300 359 0.93
Sequence Information
- Coding Sequence
- CTGGCAGCGCGGCGACAGGCGAGGGCTGAAGCCAGGGAGATCCGCATGCGCGAGTTGGAACGGCAGCAGAAGGAGATCGAGGAGAGCTGCAACAAGAACTATGACTCGTTCACGGATACGGGAGGGAGGACGCCTCGCTCGGCAGCCTCCATAGCAACAAGAAGTACCTCCCTCGGAGGATCCAACAGTTACCTATCCAGCCGACGTAGCTCGGAGGACTCTTTGGAAGAAGGCATAAGTCTCAGGGATGTGAGGCACGAGCTGAAGGAGGTGGAAGAGAAGTTCCGCAAGGCGATGATCCAGAATGCACAGCTGGACAACGAGAAGGCATCACTCACCTATCAAGTGGAACTCCTCAAGGACCGACTTGAAGATCTGGAAGAAGCCCACGCACAGTTGCAGCGAGAACACAGGGACAAAGGGCGGGAGCTGGATCAGCTGAAGAGGACGACCACCAAGCTGAAAGAGGACATGGAGTGGTACAAAGAGCAGATGGAGGAGCGTGACAGGCTCATCCAGGAGAAGGGACTGATGATAGTTGGAGATGATGAGGTGTCCAGCGACGACGATGGCTCAGACGAACCTGACTCGAACTCGCCAAAGAAGCCTCGCAAAAGAGCACTGGTCACTGTTGAATCGGCGGAGCTTCTGCAGTCTGCTGGCGAGGGTTCTCTAGATGTGCGACTGCGGAGATTCGCGGAGGAGCGAAACGAGCTGCAGGACCAGGTGCGCCACCTGAAGCTGGAGCTGGAGGAGCAGTACAGCCGCTACAAGTCCGACGCCAGGAGAGTGTCTGGGGCGACCATGAATGGGCCGGATACGGAGGTCGAAGATGTTCAGCGGGAGGCAAACAAGTTGCTTGGCGAATACAAGTTCAAACTGCAGAAAGCCGAGCAGGACGTGTCGACGCTGCAGGCCACCGTTGCACGTCTGGAGAGCCAAGTAATCCGTTATAAGTCTGCGTCAGAGTCAGCTGAGAAGGTTGAAGATGAGCTGAAAGTcgagaagaggaagctgcagcgtGAGGTGAAAGAGTTGTCGCAGCGGTTGAGTCAGGCTGAGGCGGCTAAGAATGCCTTGGCCCACCAGTTCGACCAGCTAAAGCTCACGCGTCGATAA
- Protein Sequence
- LAARRQARAEAREIRMRELERQQKEIEESCNKNYDSFTDTGGRTPRSAASIATRSTSLGGSNSYLSSRRSSEDSLEEGISLRDVRHELKEVEEKFRKAMIQNAQLDNEKASLTYQVELLKDRLEDLEEAHAQLQREHRDKGRELDQLKRTTTKLKEDMEWYKEQMEERDRLIQEKGLMIVGDDEVSSDDDGSDEPDSNSPKKPRKRALVTVESAELLQSAGEGSLDVRLRRFAEERNELQDQVRHLKLELEEQYSRYKSDARRVSGATMNGPDTEVEDVQREANKLLGEYKFKLQKAEQDVSTLQATVARLESQVIRYKSASESAEKVEDELKVEKRKLQREVKELSQRLSQAEAAKNALAHQFDQLKLTRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -