Choo000556.1
Basic Information
- Insect
- Clitarchus hookeri
- Gene Symbol
- -
- Assembly
- None
- Location
- NQII01000341.1:364583-380985[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-12 1.5e-09 36.7 0.0 1 38 118 156 118 161 0.90 2 4 8.5e-14 1.1e-10 40.3 0.1 1 39 172 210 172 213 0.95 3 4 1e-19 1.3e-16 59.2 0.0 1 45 227 272 227 272 0.98 4 4 2.4e-20 3.1e-17 61.2 0.1 1 43 279 322 279 323 0.97
Sequence Information
- Coding Sequence
- CTGCCTTTCTCCTGGGTTGCAGATGTCATACAGCTGACCTCGGATGCAGACGGCTCCAGTGTCTCCCAACGCGACAGCGAAGATGTCAAGGTCAAGTTCGAGACATTGCGTGCTATGGAGCAAGCAGAAACTATTGACATAGATAGCCACATGTCTGACAGAAATGTTGGGGAGGACGAGCACACAATGCACACCATGATGATCACTCCAGAACTGCTGGGGCTCATCCCTTCCTCGTCTGGACAGTCTGGTGACCCTTTGGCTGACGTAGGTGCACACTCACCCTCTCTGTCATCAGATGGCAGCAGTGATGCTGGCAAGGGGAACAGTGGCATGGGGCCCAAGACGTGGACTCAGGAAGACATGGAGCTGGCTTTGGATGCTCTGCGCAACCACAACATGAGTCTGACCAAGGCCTCTGCCACGTACGGCATCCCCTCGACGACGCTGTGGCAGCGTGCCCACCGCATGGGCATCGACACGCCCAAGAAGGAGGGTCCCACCAAGTCGTGGACTGAGGAGAACCTCAACAGTGCGCTGGAAGCCCTGCGTACTGGAACAATCTCTGCTAACAAGGCCAGCAAGGCCTATGGCATCCCAAGCAGCACGCTCTACAAGATAGCACGTAGAGAGGGTATACGTCTGGCGGCACCCTTTAACGCAGCCCCGACGACATGGACCCCGGACGACCTGGAGCGTGCACTGGAAGCCATCCGCACAGGCCAAACGTCAGTGCAGCGAGCATCGACGGAGTTTGGCATTCCGACGGGGACGCTATACGGGCGCTGCAAGCGAGAGGGCATAGAGCTGTCGCGCAGCAACCCTACGCCGTGGTCCGAGGACGCGATGGGGGAGGCACTGGAGGCGGTACGTGTCGGCCAGATGAGCATCAACCAGGCGGCAATTCATTACAACCTGCCGTACTCGTCGCTGTACGGGCGGTTCAAGCGCGGCAAGTACGAGGCGGAGGGACACCAGCAGGGGGAGGAGACGAGTCAGTCGCCACCGTCTGCGGCTCCCCAGGTGATGATAGTGCCGTACCCTCAGCAGCACATAGTGCCGCCGCCTCAGCCCCCGCAGCTGCCGCTCTACCAGCAGCACGTGCCTCACAGTGCCAGTTGA
- Protein Sequence
- LPFSWVADVIQLTSDADGSSVSQRDSEDVKVKFETLRAMEQAETIDIDSHMSDRNVGEDEHTMHTMMITPELLGLIPSSSGQSGDPLADVGAHSPSLSSDGSSDAGKGNSGMGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRMGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPDDLERALEAIRTGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEAEGHQQGEETSQSPPSAAPQVMIVPYPQQHIVPPPQPPQLPLYQQHVPHSAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00188907;
- 90% Identity
- iTF_00188907;
- 80% Identity
- -