Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 9.1e-12 1.2e-08 37.0 0.0 1 38 61 99 61 104 0.90

2 4 6.9e-13 9e-10 40.6 0.1 1 39 115 153 115 156 0.95

3 4 8e-19 1.1e-15 59.6 0.0 1 45 170 215 170 215 0.98

4 4 1.9e-19 2.5e-16 61.6 0.1 1 43 222 265 222 266 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	9.1e-12	1.2e-08	37.0	0.0	1	38	61	99	61	104	0.90
2	4	6.9e-13	9e-10	40.6	0.1	1	39	115	153	115	156	0.95
3	4	8e-19	1.1e-15	59.6	0.0	1	45	170	215	170	215	0.98
4	4	1.9e-19	2.5e-16	61.6	0.1	1	43	222	265	222	266	0.97

Coding Sequence: ATGGGTGTTGGAGTGTGTGCTGGTTCCCGGCTATGGGGCCACTCATGCAGGTGCACTGTGTTGCAGAATGTTGGGGAGGATGAACACACCATGCACACCATGATGATAACTCCAGAACTGTTGGGGCTCATCCCATCTTCGTCTGGACAGTCCGGTGGCGGCCTGGGACCCAAGACGTGGACCCAGGAAGACATGGAGCTGGCGCTCGATGCCCTACGCAACCACAACATGAGTCTGACGAAGGCCTCCGCCACGTACGGCATCCCTTCGACCACGCTGTGGCAGCGCGCCCACCGCATGGGTATCGACACGCCCAAGAAGGAAGGTCCGACCAAGTCCTGGACGGAGGAGAACCTGAACAGTGCCCTGGAGGCTCTGCGGACAGGCACGATATCCGCCAACAAGGCCAGCAAGGCTTACGGCATTCCAAGCAGTACACTGTACAAGATAGCGCGCCGAGAGGGGATTCGTCTGGCGGCACCCTTCAACGCAGCTCCCACGACGTGGACTCCGGACGACCTGGAGCGCGCCCTAGAAGCCATCCGCACGGGCCAGACCTCGGTGCAGCGAGCGTCCACGGAGTTCGGCATCCCCACGGGCACGCTGTACGGGCGCTGCAAGCGCGAGGGCATCGAGCTGTCGCGCAGCAACCCCACGCCCTGGTCGGAGGACGCGATGGGGGAGGCGCTGGAGGCGGTGCGAGTCGGCCAGATGAGCATCAACCAGGCGGCCATCCACTACAACCTGCCGTACTCGTCGCTGTACGGGCGCTTCAAGCGCGGCAAGTACGAGGCCGAGGGCCACCAGCAGGGGGACGAGACGAGCCAGTCCCCGCCGTCGGCCGCGCCCCAGGTCATGATCGTGCCGTATCCCCAGCAGCACATCGCGCCGCCCCCCCAGCCCCCCCAGCTGCCGCTGTATCAGCAGCACGTGCCCCACAGCGCCAGTTGA
Protein Sequence: MGVGVCAGSRLWGHSCRCTVLQNVGEDEHTMHTMMITPELLGLIPSSSGQSGGGLGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRMGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPDDLERALEAIRTGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEAEGHQQGDETSQSPPSAAPQVMIVPYPQQHIAPPPQPPQLPLYQQHVPHSAS

Sequence clustering based on sequence similarity using MMseqs2