Cdum022046.1
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- -
- Assembly
- GCA_963691665.1
- Location
- OY829526.1:4010803-4015986[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.022 1.5 10.1 0.1 5 23 356 374 355 374 0.97 2 12 0.024 1.7 10.0 0.2 1 23 380 402 380 402 0.91 3 12 1.6 1.1e+02 4.3 0.4 2 23 410 431 409 431 0.86 4 12 1.4e-06 9.6e-05 23.3 0.7 2 23 437 458 437 458 0.98 5 12 0.0036 0.25 12.6 4.3 1 23 464 486 464 486 0.98 6 12 0.00037 0.026 15.7 0.1 1 20 490 509 490 511 0.93 7 12 0.00015 0.01 16.9 0.1 1 23 544 567 544 567 0.96 8 12 0.0017 0.12 13.6 0.9 3 23 576 596 575 596 0.99 9 12 4e-05 0.0028 18.8 0.2 1 23 607 629 607 629 0.98 10 12 0.00015 0.011 16.9 6.7 1 23 635 657 635 657 0.98 11 12 0.0036 0.25 12.6 0.3 3 23 665 685 663 685 0.98 12 12 3.9e-05 0.0027 18.8 0.9 1 23 691 714 691 714 0.96
Sequence Information
- Coding Sequence
- ATGGATACGTGGTCGAGTTTGTGTCGGTGTTGTTTGTCGCCCGAATCTGAAGTGTCACTGTTCGATGACGAGAAAAACGTGAAGGAGAAATTCTATGAAATAACTACAATCGAGGTAAATACTGATGACGGGCTGCCACAGAAGCTCTGCGGGCAGTGCTACGAAACCATGAGCTCCGCCTACCAATTCCGGAAGCAGTGCATCAGAATGGACACCGAGCTGAAGCTGCAGCTCGAAGCCTTGCTCACCCAGGCTGAGGAGGAGAACCAGGCTGCTGAAGACACTGCATCCCAGGGCCAGGACTTTGACGCCGATGATATAGCCAATAATCCGGAAAAACAATTAGAAGCAATCATCAAAAAGGAACCAACTGACAGTGATGATGATTACTACTACGTACTTGTCATTGATGACCCCAAAGATAAAGATGAGAATCAGAATGAGGAAACAAAGCCTATAACAGAAATTAAACATGAAATCATGGATGCTGAGGCAGAGGAAATGGTCCCAGGTAACAATGAAGACATGATAAACAATCAACAGTTCGAACTTAACCATTTTCTGATGTCCGACACTAAAGTGCCCACCAACGTGCCTGCTACTATACTAGAGAATGAAGAAGAAAGCCAGGAGAATGAAGAATACAACTATGAAACTGCCATGGAGGCTGAAGATAATCAGGATGAAAATTCCCAAGACTATGCAGTCATAGAAGGAGATATAGAGGATTCACAGGATAATGTTACAAACTTAGTTGATGCTATCACAGGGGAGATTGGGGGAGGGCTGTCTGGTAAAATCGGGAAGAACagctttattaaaataataacaagtgGTGCAGATGGCACCATACTGCTTAAGGATAATGTAGCTTATTTGACAGAGTCCCAATTGGATGACGAAGGAGAAGCTATGTCACAAGAAGAAGAGGTCATCTTTTGTGAAGGTGATGACTCTTCACAATTTCAAATTCTAAAATGCGATGGCAATGAGTTAGTCATAGAATATGCTGATGATGGCCAAATAGCTACAGTTTTGCAGCAAGAGGATGGCAGCTTCTTATGCGACTGTGGGGAGCAATTTGAAGACTTGGCAGACTATGAGAAGCATCAATATACTCACAATTCAACAGAGGAACATGTTTGCAATCTATGCGGCAAGGGTTTTGAGTCTGCTGAGATTTTAACAGGTCACACCTTGCTACACAATGTTACTGGTCTTCTTGTGACATGCCCGTTCTGTAAACAGCTAATCAAGCGTAGTGCTTTGACCCAGCACATAAAATACGGGCACAACAACATCAAACCGCGTTGCAACGTGTGCTTAAAAACATTTGCGAATCCCAACAATCTGAAGCGTCATATGATGATCCACAGTGGCATAAGACAGTTTGAATGCGATATTTGCTTCAAAAGGTTCCATCAGAAAATAACCATGCAGACGCACAGACTGACTCACATCCATCCTTTTGCTTGCAATGAATGTGATGAAACTTTCCCCAACAAAACTGATTTAGTCAGTCACAAAGAATCAAACGAATGCACCAAATCCAAGGTCCAAAAAGTGAGAGATCAGCTCATGAGGACAGCTAAACACGAAATAACTACCAATCTGGGGAAGCTCTTGGGTTATGCCTGCGCTTTATGCAAGAAAATGTTCTCTGTGGAATCAGCTTTAGAACAACATATCGACACGGTGCACCTGGTAGACCCCAACGAACTCCTATGCTCCGAATGCGGCGAAGTGCTAACATCCAAAAAGGACATGCACACACACATTTTAACCCACAGAACTATGAAGATGAAGAATTCTAAGAGATTCGAATGTGGTATTTGTGGAAAAAGCTGTGCGAGTCAAGCGATGCTGGTGATGCATGAGAGAGTACACACTAATGAGCGACCGTTCCCTTGTCATCTTTGCTCGCTGAGATTTAAAACTAAGACCCATCTGCGAACCCACCAACTGACTCATACGAGGGAGAAAAAGTTTGGCTGCTCCGTCTGTATGAAATTCTTTGCTCTCAAAGGGAACTTGGTGGTCCATCTGAGAACTCACACGGGCGAAAGACCTTACATTTGCACCCTGTGCGGCGAAGCGTTTATTGACTCTAAGTATTTGAAGAAACACAAGTTAAAGAAGCATTCAATACAAAATGTTCCGTGGAACAAGTACTGA
- Protein Sequence
- MDTWSSLCRCCLSPESEVSLFDDEKNVKEKFYEITTIEVNTDDGLPQKLCGQCYETMSSAYQFRKQCIRMDTELKLQLEALLTQAEEENQAAEDTASQGQDFDADDIANNPEKQLEAIIKKEPTDSDDDYYYVLVIDDPKDKDENQNEETKPITEIKHEIMDAEAEEMVPGNNEDMINNQQFELNHFLMSDTKVPTNVPATILENEEESQENEEYNYETAMEAEDNQDENSQDYAVIEGDIEDSQDNVTNLVDAITGEIGGGLSGKIGKNSFIKIITSGADGTILLKDNVAYLTESQLDDEGEAMSQEEEVIFCEGDDSSQFQILKCDGNELVIEYADDGQIATVLQQEDGSFLCDCGEQFEDLADYEKHQYTHNSTEEHVCNLCGKGFESAEILTGHTLLHNVTGLLVTCPFCKQLIKRSALTQHIKYGHNNIKPRCNVCLKTFANPNNLKRHMMIHSGIRQFECDICFKRFHQKITMQTHRLTHIHPFACNECDETFPNKTDLVSHKESNECTKSKVQKVRDQLMRTAKHEITTNLGKLLGYACALCKKMFSVESALEQHIDTVHLVDPNELLCSECGEVLTSKKDMHTHILTHRTMKMKNSKRFECGICGKSCASQAMLVMHERVHTNERPFPCHLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYICTLCGEAFIDSKYLKKHKLKKHSIQNVPWNKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00009340;
- 90% Identity
- iTF_00462637;
- 80% Identity
- -