Cbil020049.1
Basic Information
- Insect
- Clanis bilineata
- Gene Symbol
- -
- Assembly
- GCA_036417725.1
- Location
- CM071160.1:1286775-1290050[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0079 0.54 11.4 1.4 1 23 247 270 247 270 0.95 2 18 6.5e-05 0.0044 17.9 3.8 1 23 275 297 275 297 0.99 3 18 0.082 5.6 8.2 0.4 1 23 327 350 327 350 0.93 4 18 0.0062 0.42 11.7 0.7 3 23 412 433 410 433 0.95 5 18 0.0019 0.13 13.3 3.8 1 23 439 462 439 462 0.94 6 18 0.034 2.3 9.4 0.1 3 21 467 485 466 486 0.92 7 18 0.23 16 6.8 0.2 1 22 494 515 494 517 0.89 8 18 0.29 20 6.4 0.2 1 23 522 545 522 545 0.94 9 18 0.009 0.61 11.2 0.2 2 23 558 579 557 579 0.95 10 18 0.31 21 6.3 4.7 1 23 585 607 585 607 0.98 11 18 7.6 5.2e+02 2.0 0.1 2 9 612 619 611 623 0.87 12 18 0.00079 0.054 14.5 0.7 1 23 642 664 642 664 0.96 13 18 0.00082 0.056 14.5 0.4 2 23 668 688 667 688 0.97 14 18 0.64 43 5.4 3.5 2 23 699 721 698 721 0.96 15 18 0.00036 0.024 15.6 1.4 1 23 727 749 727 749 0.98 16 18 0.00014 0.0093 16.9 4.9 2 23 756 777 755 777 0.96 17 18 0.0026 0.18 12.9 1.7 1 23 783 806 783 806 0.96 18 18 3.3 2.3e+02 3.1 1.3 3 23 813 834 811 834 0.94
Sequence Information
- Coding Sequence
- ATGGAGCCTTTAGAAATGCATGAAATCCACGAGCCAACAAAATCTCTCTCATCAGAGAGAGCCCAAGTAGAGTGGTTGAAACAGAAGTTGAGCTGTCTGTTGGATGCCGCTCCGTTCTGTGGGATGTGTTTGGACAACACCAAGAGTCTCAATTTTATAGACAAGGAATTCATTATTGGCCGGCAGAAAGATTCACTGTCACTTTTAGATATTCTAAATTACGTATTTAATGAAGATATTGAAAACATCATGCTAAGTACACATTTATGTGACAATTGTTCAGAAAAAACAATACAGTCATACTTGTTCATAAGGAATACAAAGCTGCTATCGAAAATCATTAATAATTGTGTCAGCGACATACATAGCAAAGCTATCGACATAGGAGAGCAAGTTTTAGCTGATTTCCTGTACGATGCCAATGTAATGATTGTTttggaaaatgatattgaaATGTTCGATGAAATCGACGATCTTACCGCTGTTACGGAAATAATGCCGACAGACGGACCAATTATAACCAAAGTCGTTTCCGAACAGAAAATAAATGAAGAggaaaataagaaaaaagagTCGGAAGTATTAGTTACTACTAGAGTTATGGAAACTAAAACTGAAGAATTAAGTCCTAAAGTTATCAAATCTGAGACAACTCCAAATATAACGTTGGAGAAGGGAAAGCTTGTTATAAAACCTATTAAAACTTCCAGACCACACACAATGCCTATATTCAACACTTATAAATGCAACAATTGTCCAGATATATTCACTACATACAGATCGTTGAAGGAACACGAAAAATTAAAGCATAATTACCAAGTATTTAAATGCAGGTTGTGTGAAAAAACGTACAACACCCAGCAGTCTTTGAATAATCATTACAAGACCCATTCGAAAGCCAGGTGTAAGGTTTGCCAAATGTTATTGAAGGACGATGATCTATTCTCGCATTTGAGGCAGTATCACACAAATGTAGTGTTCCCATGCCAGTTTTGTGAGCTTGTGTACTACACTCAAGAAGCTTTGGACACGCATTTCAAAGCAAGCCACTTGGTTAATGATACTTTTGTAAAATCACAATGCGCAATGTGTTTGAAAGAAATAAGTAAAGATGAGTTAAAGGCTCACAAATGCAAGTTCAGTTGTCCAGACTGTTCTGTTATGCCTTGCATACATTATAACTACTTAGTATCGTACAGGCAGCAAGTTTTGAATCACTCGCCTAAAATAAACTGCCCGGATTGCGACTATGTCACTCACAGGAAGGAATATTTTGTAACCCATGTGAATAGGGAGCATCTAGATCATCACCCATTCACATGTAACCATTGTGAAATGCAATTTTACACCAAAATGAGTTTGAAAACTCATATAGATCAGTACCATGTCGACAATATATGTGAATACTGTGATACTGAATTCAAGAAGCGGAGTGTTCTTGCAGGGCATAGGAAAATTTGCAAAACAGTTATACGGGCATTTTCATGTGAAAAATGTGCAGCTTCATTTGATTTAGAAGAGGATCTTATTAAACATGAGTTCTTACGGCACAGTGACGGTGGATTCGCTTGTAAATCTTGCAACAGAAGATTCCTCGAAGAAGTACAGTTAGAAGAACATCAAGTGACAGCACACAGCCGTGTCCAATGCAAGAAGAGGCGAAAAAATATAGAGTGTACTCTATGTGAAGTGAAATTCAGTAACATTAAAGAATTACAACAACATGAAGATATGCATGGACCAAACACAATATACCCTTGTAAGACGTGTATGAAACAGTTCCATAGTCTTAAAAAGCTTTATATCCACCAACAGAGGCACTATGAAAGGATACAATGCCCAGGGTGTAAAAAGAGGGTGATAGTAAGTTTTTTCCCTCAACACTCAGTCCGCTGCGTTTACAATAGAGATGGTCCACTGAATCACATCTGTGAGGTCTGCGGTAAGGCTTTCCACTTAGAATCGTTACTGATTTTGCACCAAAAGGCTCATGAAAAGGTTCAGTGCACAAGATGCGACAAGTCTGTCAAAGCTTCAAACCTGGAGAATCATATGAAAGGCCATGACAAAACTTCAAAATCCTTAGCCAAGTTGAGATGTGGTTTATGCGGACACTTGGTGAGAAAGAAGTGCGATTTGGACACACATATGAACAGATATCATTTGAAAGTTAAGCCATATGCATGCACCATTTGCACCAAAAGTTTCTGTGGGAAAGTTAGGCTGACGGAGCATTTGGCAACGCACACCACAGACAACGAATGCTTCTGTACGATATGTGGTAAGAAGTTTGCTAACCGAGTGTGTTTGAAAATGCACCTACGTATCCACACTGGGGAATGTCCGTACACATGTGACCTTTGCGGAGAGAAATTCAGGTCTTCGAGTATTATGAAAACGCACAGACTAAAAAAGCATTTAGAAAAGACTATTGCTTGTCCGTCTTGTGACAGCATGTTTCATATTGTTAGTGAGATGCGACATCACTACAAAAATGTACATTGGAAGGATAAAGACAGGCCATTTAATTACAAAGAAACGGTGCCTAGGGAGTATCATCATTTGTTTGAGGATGGCAGGCTGCCCAAGATAAGTGATGATGCTTTAGGGTCCTAG
- Protein Sequence
- MEPLEMHEIHEPTKSLSSERAQVEWLKQKLSCLLDAAPFCGMCLDNTKSLNFIDKEFIIGRQKDSLSLLDILNYVFNEDIENIMLSTHLCDNCSEKTIQSYLFIRNTKLLSKIINNCVSDIHSKAIDIGEQVLADFLYDANVMIVLENDIEMFDEIDDLTAVTEIMPTDGPIITKVVSEQKINEEENKKKESEVLVTTRVMETKTEELSPKVIKSETTPNITLEKGKLVIKPIKTSRPHTMPIFNTYKCNNCPDIFTTYRSLKEHEKLKHNYQVFKCRLCEKTYNTQQSLNNHYKTHSKARCKVCQMLLKDDDLFSHLRQYHTNVVFPCQFCELVYYTQEALDTHFKASHLVNDTFVKSQCAMCLKEISKDELKAHKCKFSCPDCSVMPCIHYNYLVSYRQQVLNHSPKINCPDCDYVTHRKEYFVTHVNREHLDHHPFTCNHCEMQFYTKMSLKTHIDQYHVDNICEYCDTEFKKRSVLAGHRKICKTVIRAFSCEKCAASFDLEEDLIKHEFLRHSDGGFACKSCNRRFLEEVQLEEHQVTAHSRVQCKKRRKNIECTLCEVKFSNIKELQQHEDMHGPNTIYPCKTCMKQFHSLKKLYIHQQRHYERIQCPGCKKRVIVSFFPQHSVRCVYNRDGPLNHICEVCGKAFHLESLLILHQKAHEKVQCTRCDKSVKASNLENHMKGHDKTSKSLAKLRCGLCGHLVRKKCDLDTHMNRYHLKVKPYACTICTKSFCGKVRLTEHLATHTTDNECFCTICGKKFANRVCLKMHLRIHTGECPYTCDLCGEKFRSSSIMKTHRLKKHLEKTIACPSCDSMFHIVSEMRHHYKNVHWKDKDRPFNYKETVPREYHHLFEDGRLPKISDDALGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00063878;
- 90% Identity
- -
- 80% Identity
- -