Ajug020623.1
Basic Information
- Insect
- Amorpha juglandis
- Gene Symbol
- -
- Assembly
- GCA_949126905.1
- Location
- OX421391.1:8491612-8495636[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0079 0.5 11.4 3.1 1 23 250 273 250 273 0.95 2 19 5e-05 0.0032 18.3 3.2 1 23 278 300 278 300 0.99 3 19 5.3 3.3e+02 2.5 0.6 2 23 304 325 304 325 0.91 4 19 0.062 3.9 8.5 0.3 1 23 330 353 330 353 0.93 5 19 0.011 0.71 10.9 1.2 3 23 415 436 413 436 0.96 6 19 4.6e-05 0.0029 18.4 1.4 1 23 442 465 442 465 0.94 7 19 0.12 7.7 7.6 0.2 3 22 470 489 469 489 0.92 8 19 1.7 1.1e+02 4.0 0.1 1 21 497 517 497 520 0.87 9 19 0.044 2.8 9.0 0.1 1 23 525 548 525 548 0.96 10 19 0.005 0.31 12.0 0.1 2 23 561 582 560 582 0.95 11 19 0.023 1.4 9.9 4.0 1 23 588 610 588 610 0.98 12 19 7.1 4.4e+02 2.1 0.2 2 9 615 622 614 628 0.86 13 19 6.9e-05 0.0044 17.8 1.1 1 23 645 667 645 667 0.97 14 19 0.0045 0.28 12.1 0.1 3 23 672 691 670 691 0.96 15 19 0.028 1.8 9.6 1.3 2 23 704 726 703 726 0.96 16 19 0.0072 0.45 11.5 3.9 1 23 732 754 732 754 0.97 17 19 0.00041 0.026 15.4 5.9 2 23 761 782 760 782 0.96 18 19 0.0014 0.086 13.7 1.4 1 23 788 811 788 811 0.96 19 19 8.6 5.4e+02 1.8 2.6 3 23 818 839 817 839 0.92
Sequence Information
- Coding Sequence
- aTGGTGGACAGATTAGAAATTCACGAACACCATGAGCCAATAAAGACCCCGTCTTCGTCAGAAACAGCTCAGCTGGAATGGTTGAAACAGAAGTTAAGGTGTCTATGGGAGTCAAAACCGTTTTGCGGAATGTGTTTGGATAACACGAGGAGTCTTAATTGCCTCAATACAGAATTTGTTATCGGCAGACAGAAAGATTCTCAGTCACTCTTAGATATTttgaattatgtatttaatgaaGATAttgaaaatataatgtcaagCACAAATCTGTGTGATAATTGTTCagaaaaaacaatacaatcatATTTATTCATACGGAATACAAAGTTATTATCGAAAATCATTAATAATTGTGTCACAGATATAAACTCCAAGGCAGTTGACGTAGGAGAACAAGTTTTAGAAGATTTTATGTATGACGCTAACGTCATGATTGTGTTAGAGAATGATGTGGAAATGTTTGACGAAATCGAAGATCTCACCGCAGTCACAGAAATAATACCGACAGATGAACCAATTATAACTAAAATTGACAATACTCATGAAAAACGTACGGAAGCACAAAAGAACAAAGACACTGAAGAATTAGTTACTACGAGAGTGATAGAGAGAAAGTCTGAAAATGCATTCCcttataaaatgataaaatctGAGGAAACCCCGAACATAACTTTGGAAAAAGGAAAGCTTGTTATAAAACCAATAAAAACCCTCAAGCCTCGTACGTTGCCCATATTCAACACCTATAAATGCAATCATTGTCCAGATATTTTCACCACATACAGATCTTTAAAGGAGCATGAAAAATTAAAGCATAAGATCCAAATTTTCAAATGTAGATTATGTGAAAAGTCATACAACACACAGCAATCTTTGAATAACCATTACAACACTCATTCAAAAGCCAGATGTAAGATTTGTCAAGTGTTACTGCGAGAAGAGGATCTGTTCTCGCATTTAAGACAATATCATACGAATATAGTGTATCCCTGCCAGTTCTGTGAGCTTGTATATTACACTCAAGAAGCTCTGGATACGCATTTCAAAGCAAGCCATTTAGTTAACAATACTATTGCAAAGTCACAATGTGTGATGTGTTTGAAAGAATTAAGTGAAGCTGAGTTAAAGAATCATAAATGCAAGTTTAGTTGTCCGGATTGCTTTGTAATGCCTTGCATACATTATAACTACTTAGTGTCGTACAGGCAGCAAATATTGAATCATTCGGCCAAAGTAAACTGCACGGATTGTGACTATGTCACTCACAGGAAGGAATATTTCATAACACATGTGAATAGAGAGCATTTGGATCACCATCCATTCACGTGTAACGACTGTGGAATgcagttttatacaaaaatgaGTTTGAAGAATCATATAGACCAATATCACATTGACAATATCTGTGAATACTGTGACACTGAGTTCAAGAAGCGCAATGTGCTTGTAGGACACAGAAAAACTTGTAAAACAGTTATAAGGGTGTACTCCTGCGATAAATGTGCAGCTTCGTTCGATGTTGAAGAGGATATTATCAAACATGAGTTCCTCAGGCACAGTGACGGTGGATTTGCTTGTAAACTATGCAATAGAAGGTTCCTGGAGGAGGTACAGCTTGAGGAACACCAAATCACAGCACATAGTCGTGTCCAGTGCAAGAAGAGgcgaaaaaatattgaatgtacTCTATGtgatattaaattcaataatgtCAAGGAATTAGAACAACATGAAGATATGCACGGACCGAATACAATATACCCTTGTAAGACATGTTTGAAGGAATTCCACAATCTTAAAAAGCTATACATTCATCAACAGAGGCACTATGATAGGATTCAATGCCCTGGATGTAAGAAAAGAGTAATAGTAAGTTTTTATGCACAACATGCGGTCCGTTGCGTTTACAATAGAGACGGCCTATTGAATCATATCTGTGAAGTCTGCGGCAAGGCTTTCCATTTAGAATCGTTACTGCGGGCGCACCAAAAGGTTCACTTAAAAGTTAATTGTTCAGAATGTGGCAAGACGGTTAAAGCGTCCAATTTGGACAGTCATCTACGTGGCCATAGCAATGCAAGAATTTCAAAGACCTTGCCCAAGATCAAGTGTAATTTATGCGGACATTTGGTGAGAAAGAAATGGGATCTGGACACTCACATGAACAGATATCATTTGAAAGTTAAACCATACGCGTGCCATATTTGTACGAAAAGATTTTGTGGAAAACTTAGGCTTACGGAACACTTGGCAACTCACACCTCGGACAATGAATGCTTCTGTACAACTTGTGGGAAGAAATTTGCCAACAAAGTATGTTTGAAAATGCATCTACGAATACACACTGGGGAATGTCCATACACGTGTGACGTCTGTGGTGAAAAATTTAGATCATCAAGTATAATGAAAACCCACAGACTCAAAAAGCATTTAGCGAAGACTGTGGCATGCCCTTCTTGTGATACTATGTTCCACTTAGTAAGAGAAATGAGgcatcacttcaaaaatgtccaTTGGAAGGATAAAGACAGACCGTTTAATTACAAAGAAGCTGTGTCTAAagaatattatcatttatttgaggATGGAAGACTGCCCAAGATCGATACGGAGACAGTATCTACCTAG
- Protein Sequence
- MVDRLEIHEHHEPIKTPSSSETAQLEWLKQKLRCLWESKPFCGMCLDNTRSLNCLNTEFVIGRQKDSQSLLDILNYVFNEDIENIMSSTNLCDNCSEKTIQSYLFIRNTKLLSKIINNCVTDINSKAVDVGEQVLEDFMYDANVMIVLENDVEMFDEIEDLTAVTEIIPTDEPIITKIDNTHEKRTEAQKNKDTEELVTTRVIERKSENAFPYKMIKSEETPNITLEKGKLVIKPIKTLKPRTLPIFNTYKCNHCPDIFTTYRSLKEHEKLKHKIQIFKCRLCEKSYNTQQSLNNHYNTHSKARCKICQVLLREEDLFSHLRQYHTNIVYPCQFCELVYYTQEALDTHFKASHLVNNTIAKSQCVMCLKELSEAELKNHKCKFSCPDCFVMPCIHYNYLVSYRQQILNHSAKVNCTDCDYVTHRKEYFITHVNREHLDHHPFTCNDCGMQFYTKMSLKNHIDQYHIDNICEYCDTEFKKRNVLVGHRKTCKTVIRVYSCDKCAASFDVEEDIIKHEFLRHSDGGFACKLCNRRFLEEVQLEEHQITAHSRVQCKKRRKNIECTLCDIKFNNVKELEQHEDMHGPNTIYPCKTCLKEFHNLKKLYIHQQRHYDRIQCPGCKKRVIVSFYAQHAVRCVYNRDGLLNHICEVCGKAFHLESLLRAHQKVHLKVNCSECGKTVKASNLDSHLRGHSNARISKTLPKIKCNLCGHLVRKKWDLDTHMNRYHLKVKPYACHICTKRFCGKLRLTEHLATHTSDNECFCTTCGKKFANKVCLKMHLRIHTGECPYTCDVCGEKFRSSSIMKTHRLKKHLAKTVACPSCDTMFHLVREMRHHFKNVHWKDKDRPFNYKEAVSKEYYHLFEDGRLPKIDTETVST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01010689; iTF_00341638; iTF_00858904;
- 90% Identity
- iTF_01010689;
- 80% Identity
- -