Cbil022413.1
Basic Information
- Insect
- Clanis bilineata
- Gene Symbol
- Zfa
- Assembly
- GCA_036417725.1
- Location
- CM071163.1:10435901-10448734[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0013 0.088 13.8 1.2 1 23 212 234 212 234 0.99 2 11 0.59 40 5.5 2.5 1 23 241 263 241 263 0.97 3 11 1.1 73 4.6 0.4 1 20 267 286 267 290 0.73 4 11 1.2e-05 0.00081 20.2 5.5 1 23 297 320 297 320 0.96 5 11 4.7e-05 0.0032 18.4 0.2 3 23 328 349 326 349 0.96 6 11 0.00032 0.022 15.7 2.6 2 23 363 384 359 384 0.93 7 11 7.5e-06 0.00051 20.9 0.7 1 22 390 411 390 415 0.94 8 11 0.00047 0.032 15.2 1.5 2 23 424 446 423 446 0.95 9 11 5.5e-05 0.0038 18.1 2.6 1 23 452 475 452 475 0.98 10 11 1.9e-05 0.0013 19.6 1.1 1 23 484 506 484 506 0.97 11 11 0.003 0.2 12.7 0.1 1 23 512 535 512 535 0.96
Sequence Information
- Coding Sequence
- ATGGTGGTCTGGGTGAACATCCTTAACTTATGTTATCTGTGCAGAAGACTGGCTCAAAGAGCAGATTCCTTTGTGCAGAATGTACAGAGCAATCAAATATTATTAGAGAATTTTCACagtaTGATGGATGAGACACTGCAAGCAGTGAGAAGTCAAATTCATCCCTTAATAAATTTGTCTCCAGTGTCCCTCTGTGCCATAGAGTTTGTGCACAATGGTGAGGATGTAAAATTAAAGAGGGAAGGCAATGAGCTTGTTGGAGAGTTCATACAGAGAGATGATGATTCTATGGATATGCCAGAGGTTACAGTCGTCAATCAAAATACGGTAAAGGTCGAAATGAAAGAAGAAGGTGATGTTGATGACTTAATTGGTGATGAtgaTTATGAAGATTATTTTAAGGAAGATACATTCCCATTGAAGGAGTTACTCAAAGAAGAAGTTGAGGGCGAGGAGATAGATCTAATAAGTCTCAAGAACTCTTTAAAAAAGGCCAAAAATAAGAAAAGTACAAGTAAAGTGAAACTGAAAGGCAGAGAAACACCGCTAATACAAAAAGTGTATCTAACGAAGAAGCAATGTCTGGAAGAGCGAGAGAGAATGGCACAAGACTCGAAGTACATTAACTCTGAATACAAGTGCGTGGATTGTCTCAAAGGCTTCAACTTCAAGCCGAGTTATGACAGACACATGGAAAAACACAGTGAGAGCATGGGCCCGCATCGATGCGATGTTTGCAAACAACGAATGGATACTGAAGAGAAACTGGCCAATCATAAGAAATATCACTCAGTTCGGTACAAATGTTCGGAATGTGGATTGATGCGAAGCGGTCGTCTCACGATTCGGGATCATTACACAGCGTTCCACTGCCACGGATACTATCAGTACAACTGTCCGCACTGTCCCAAATCGTTTAAACGTCAAGTATCTATGAGAAAGCATATATGTTACTCCCATAAAAACAAGGAGAGAGTGATTTGTGCGTATTGCAATAAAAGCTATGCCAGCAAAGAAGTACTCAAAGCGCATATGATGAGGAGACACCCAAAGAAAGTGTCAGCGGGCGAGAAATGCAAGCGATGTGTATGCCAGGAATGTGGCATGGCGTTCGTGTCCCCCTCACAACTCAGGAGCCATAGTGTCAAGCACACTATGAACAGGAACTACTACTGCGTCGAGTGTGATAAGAGTTTCAAATCGGATTCgactttaaaacaacatttgAAAACCGCTTCGCCTCACGTCAATTACATTGATTTACCATTGCCGTGTCTACATTGTAACAAGAGGTTTGCTATAAGAAGGGACCTAGAGAGGCACACGAACCGGGTCCAtctgaacctgagaccttacaAATGTGATCGATGTGATAAATCGTACGTGACGTCATGGTGCCTCACGGAACACAAGCGGATGATCCACGAGGGTTACAAGAGACCCATGAAGTTCGCGTGCCCCATGTGCGATAAAGTTTTTGACCGTAACCACATACTGAAGAGTCACGTTCGAACCCACACTGGCGAGAGACCGTACCAGTGCACCAAGTGTCCAGCACAGTTCACCCAGCCGGGGATCCTCAACACCCACGTGAAGCTCATACACCTGAAGCTCACCAGGGACGGCAGGCCCAAGACCAGCACCAAGAAATGA
- Protein Sequence
- MVVWVNILNLCYLCRRLAQRADSFVQNVQSNQILLENFHSMMDETLQAVRSQIHPLINLSPVSLCAIEFVHNGEDVKLKREGNELVGEFIQRDDDSMDMPEVTVVNQNTVKVEMKEEGDVDDLIGDDDYEDYFKEDTFPLKELLKEEVEGEEIDLISLKNSLKKAKNKKSTSKVKLKGRETPLIQKVYLTKKQCLEERERMAQDSKYINSEYKCVDCLKGFNFKPSYDRHMEKHSESMGPHRCDVCKQRMDTEEKLANHKKYHSVRYKCSECGLMRSGRLTIRDHYTAFHCHGYYQYNCPHCPKSFKRQVSMRKHICYSHKNKERVICAYCNKSYASKEVLKAHMMRRHPKKVSAGEKCKRCVCQECGMAFVSPSQLRSHSVKHTMNRNYYCVECDKSFKSDSTLKQHLKTASPHVNYIDLPLPCLHCNKRFAIRRDLERHTNRVHLNLRPYKCDRCDKSYVTSWCLTEHKRMIHEGYKRPMKFACPMCDKVFDRNHILKSHVRTHTGERPYQCTKCPAQFTQPGILNTHVKLIHLKLTRDGRPKTSTKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01359100;
- 90% Identity
- -
- 80% Identity
- -