Cbil014417.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Clanis bilineata
Gene Symbol
-
Assembly
GCA_036417725.1
Location
CM071153.1:12146091-12171159[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 9.5e-05 0.0065 17.4 2.2 1 23 458 480 458 480 0.97
2 20 0.016 1.1 10.4 0.7 1 20 486 505 486 508 0.94
3 20 9.4e-05 0.0064 17.4 4.4 1 23 527 549 527 549 0.97
4 20 0.00012 0.0079 17.1 4.1 1 23 555 577 555 577 0.99
5 20 4.4e-05 0.003 18.5 5.3 1 23 583 605 583 605 0.97
6 20 1.3e-05 0.00092 20.1 7.3 1 23 611 633 611 633 0.97
7 20 8.5e-07 5.8e-05 23.9 2.9 1 23 639 661 639 661 0.97
8 20 0.00012 0.0082 17.1 6.7 1 23 667 689 667 689 0.97
9 20 0.00012 0.0081 17.1 6.5 1 23 695 717 695 717 0.97
10 20 5.8e-07 3.9e-05 24.4 1.9 1 23 723 745 723 745 0.98
11 20 5.9e-05 0.004 18.1 7.9 1 23 751 773 751 773 0.98
12 20 9.4e-06 0.00064 20.6 6.6 1 23 779 801 779 801 0.98
13 20 8.5e-06 0.00058 20.7 5.4 1 23 807 829 807 829 0.98
14 20 3.1e-05 0.0021 18.9 5.4 1 23 835 857 835 857 0.96
15 20 8.8e-06 0.0006 20.7 7.2 1 23 863 885 863 885 0.97
16 20 3.6e-06 0.00025 21.9 6.0 1 23 891 913 891 913 0.98
17 20 2e-05 0.0014 19.5 8.0 1 23 919 941 919 941 0.97
18 20 2.9e-06 0.0002 22.2 4.1 1 23 947 969 947 969 0.96
19 20 0.00064 0.044 14.8 0.3 1 23 976 998 976 998 0.96
20 20 0.3 20 6.4 5.6 1 23 1005 1027 1005 1027 0.99

Sequence Information

Coding Sequence
ATGAATCCGGAACACCATAATATAAATACGGGTGGTGGCCAGCCTCCTGGAAGCACAGAGACACAGAATCAGAGAGTGCAATCCGCACAGCAGCAGCAAAGTAATTTAACGCCCACCACGTCTGCTACTGACCTACGAGTGAACTCCGCTGCCGTCAACGTTGCTTTGTCTAGCGTTGCAAAATATTGGGTGTTTACGAATTTATTCCCCGGCCCGATACCACAAGTTTCGGTCTACGGACTACCCACAGGCACTAGAATTGAAAATGGAAAACCAGTCcaggACCTTGGACAAGCCCATGCGAGTATACTCAATGGTGATCCAAACATATTACTGGGACATCATGGAGCTCAGCCGCAGGTTACTGTTTCTGCATCGGGAGCTCAGCAGATACCTGTGTCGCAAATCATTGCCACACAGTCTGGACAAACACATGAAGCATTGGTGGGTCACAGCCACGGCCAGGCGCAGGAGGTCGTGGCGGGCGCGGGTGCCGGTGCGgggggagggggaggggggCCAGTCGGCGCGACGCACTCCTCGCACCACCAGGTACCCAATAACCGGGTCGAGTTTGTACAACACCATAACATTGATATGCAACACATGATGCAGCAACAACTAATGGCTACATCGCGACAGGATCATCCGAATCAAcaaATACAGTTAACGGTCAGTGAGGATGGCATAGTGACTGTGGTGGAGCCCGGCGGCGGCAAGATGGTGGATAAGGAAGAGTTACACGAAGCCATTAAGATACCTGACCATGCACTTACGGTGCATCAGCTGCAGCAGATAGTCGGCCAACAAGTGATAGACAGCGTGGTGCGCATCGAGCAGGCGACGGGCGAGCCCGCCAACATCCTCGTCACGCACAACGCCGACGGCACCACCTCCATCGAGGCGAGCGCCGCCGACCACTCCGCCGCGGCTCATCCCACGCACCAATCCCACCAGCCACACCAAACCCACCAGACGCACCAGTCCCATCAATCCCACCAGACGCACCAACCCCACCAGCCGCACCCGCCGCCGCTCGTCAAGGACGAGAATAAGCAGCCCAAGATCGACGCGCAGTTCGCCATACCCGCTGAGATCAAGGACATCAAGGGCATAGACTTGAAGACTGTAGGAGCAATGGGAATGGAAGGTGCAGTGGTGAAGATCTCTGCTGGAGCGTCAGAACATGACATGCATGCTATGTACAAAGTCAACGTAGAGGATCTATCACACCTGCTGGCTTACCATGAAGTGTTTGGAAAATTAAATTCAGAAGGACAACCACAACAGCAGGCCAAggtgATCAGCGAGGTTGAAGTAGAGGCGGGCACGAGCGCCACTATGTCGGAACTCGAATCATCCCCGGGACACCATTCGTGCGATATTTGCGGGAAAATATTCCAATTTCGATATCAACTGATCGTCCACAGACGGTATCATGGAGAGAGCAAGCCGTTCACGTGTCAAGTGTGCGGCTCTGCGTTTGGGAACCCCGTCGAGCTATCAAGACATGGGAAATGTCATCTTGCCGGAGACCCGTCTGAAAGGCACGCCAAGAGAGTGACACAAGACAAACCATACGCGTGCACGGCTTGCCACAAAACATTTTCAAGGAAAGAGCATCTCGACAATCATGTCAGGAGTCACACTGGGGAGACTCCATACAGATGTGAGTTCTGCGCGAAGACGTTCACGCGTAAGGAGCACATGGTCAACCACGTGCGGAAACACACCGGCGAGACGCCGCACCGCTGCGACATCTGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCATACAGGTGAAACGCCGCACCATTGTCAAATATGCGGAAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGATCACACACGAACGATACGCCGTTTCGTTGTGAACTCTGCGGCAAGTCGTTTACGCGGAAGGAACACTTCACCAATCACATACTGTGGCATACGGGCGAAACACCTCACCGTTGCGACTTCTGTTCGAAAACCTTCACGCGTAAAGAACATCTACTCAATCACGTGAGACAGCACACAGGCGAATCTCCCCATCGGTGTAACTTCTGTTCGAAGTCCTTCACGAGACGAGAACATCTCGTGAACCACGTGCGGCAACACACAGGAGAGACGCCCTTCCAGTGTGGATACTGCCCTAAAGCATTCACCAGAAAAGACCATCTCGTGAACCACGTCAGGCAACACACGGGCGAGTCTCCGCACAAGTGTTCGTTCTGCACGAAGTCGTTCACGCGCAAGGAGCACCTCACCAACCACGTGCGGCAACACACGGGCGAGTCGCCGCACCGCTGCACATACTGCGCCAAGTCCTTCACCAGGAAGGAACACCTCACCAACCATATCAGACAGCACACGGGCGAAACTCCACACAAGTGCACGTTCTGCCCGCGCGCGTTCTCGCGCAAGGAACATCTCAACAACCACATCCGACAGCACACCGGCGTCACGCCGCACGCCTGCACCTACTGCACCAAGACCTTCACGCGCAAGGAGCATCTCGTCAACCACGTCAGACAACACACGGGCGAGACTCCGTTCAAATGCACGTACTGCTCTAAATCATTCTCACGCAAAGAACACCTGACAAATCATATACACCTCCACACTGGAGAGACCCCACACAAATGTCCCTTCTGTACTAAGACATTCTCGAGAAAGGAGCATCTTACCAACCATGttagaATCCACACGGGTGAATCGCCGCATCGCTGCGAGTTTTGTCAGAAAACGTTCACTCGGAAGGAACACCTCACGAACCATATGAAACAGCACACGGGCGACACTGCGCATGCGTGCAAGATCTGCTCAAAGCCTTTCACCAGGAAAGAGCATCTAGTTACGCATATGAGATCGCATAGTTGTGGAGAAAGGCCGTACAGTTGCGGTGAATGCGGCAAGTCGTTCCCGTTGAAAGGAAACTTGTTGTTCCACGAACGGTCGCACAATAAAGGCGCTCGCCCGTATCGATGCGATATCTGTTCAAAGAACTTTTTATGTAAAGGTCATTTGGTGTCTCACCGTCGCACGCACGCGGAGGCGGGCGACAACCCGCCCGCCGGGGACGCGCCGCCCGACACCGAGGACTGCACCACCGACTGCAACAAGTGCGTCAAGATCGAAGTCGAACAGCCTGAGAGGAAGCACGACATCAGAGCTGCAGTTGAAAACCGTCCAGCTGAGAACAGTGTTCCTCAACCGGCACAAAACAACACAGCTGTTATGCAAATTAATAACCAAGTTAATCAGCAGCAGGTGCGGCCAGTAACTGCGACCAGTGCTCAAGGCGTGACGACGGGCACGTTCACTCACACGGCCAGCGCGCAGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence
MNPEHHNINTGGGQPPGSTETQNQRVQSAQQQQSNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDLGQAHASILNGDPNILLGHHGAQPQVTVSASGAQQIPVSQIIATQSGQTHEALVGHSHGQAQEVVAGAGAGAGGGGGGPVGATHSSHHQVPNNRVEFVQHHNIDMQHMMQQQLMATSRQDHPNQQIQLTVSEDGIVTVVEPGGGKMVDKEELHEAIKIPDHALTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNADGTTSIEASAADHSAAAHPTHQSHQPHQTHQTHQSHQSHQTHQPHQPHPPPLVKDENKQPKIDAQFAIPAEIKDIKGIDLKTVGAMGMEGAVVKISAGASEHDMHAMYKVNVEDLSHLLAYHEVFGKLNSEGQPQQQAKVISEVEVEAGTSATMSELESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFGNPVELSRHGKCHLAGDPSERHAKRVTQDKPYACTACHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPHKCTFCPRAFSRKEHLNNHIRQHTGVTPHACTYCTKTFTRKEHLVNHVRQHTGETPFKCTYCSKSFSRKEHLTNHIHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHMKQHTGDTAHACKICSKPFTRKEHLVTHMRSHSCGERPYSCGECGKSFPLKGNLLFHERSHNKGARPYRCDICSKNFLCKGHLVSHRRTHAEAGDNPPAGDAPPDTEDCTTDCNKCVKIEVEQPERKHDIRAAVENRPAENSVPQPAQNNTAVMQINNQVNQQQVRPVTATSAQGVTTGTFTHTASAQHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01030446;
90% Identity
iTF_00429225;
80% Identity
-