Cced000494.1
Basic Information
- Insect
- Cinara cedri
- Gene Symbol
- -
- Assembly
- GCA_902439185.1
- Location
- CABPRJ010000962.1:780158-786099[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.54 3.6e+03 -1.7 0.1 24 45 97 118 88 121 0.75 2 7 0.037 2.4e+02 2.1 0.0 26 46 206 225 196 231 0.81 3 7 0.0071 47 4.4 0.1 21 43 257 279 251 284 0.87 4 7 0.0023 15 5.9 0.0 21 44 285 308 282 317 0.85 5 7 0.0036 23 5.3 0.0 21 43 341 363 334 369 0.90 6 7 0.0029 19 5.6 0.0 21 44 369 392 367 402 0.85 7 7 0.0002 1.3 9.3 0.1 21 46 425 450 417 457 0.84
Sequence Information
- Coding Sequence
- ATGATAATCGACTGTTTGCTACTACGCTACTGCGCGGTTGAACTCTATGGCCGCAAAGAAATTTATGATATGTTACGGGGCACGAAACCTAATCGAAAATTCCGATTTCGATACCAACATCGATACATACACAACTCTGAAGTAGAAAAAGAACAATCAAATAGCCCAACAATTGAAATAAAAAAAGAATTTGATTTAATAAATGGTTGTACATTTGAAAGTATAATAACTATTGAAAATGTTCCTATGAAATTAATTTCACATGAAAAATCGAAAATTAGAAAAAAGAGTTATACGTGCAAATACTGTCATAACACATTTAATTCTAAATCAAGTTTGACATGCCACATGGAAACGCACACTGGAAGAAAAGTTGATAGTGACAACCAACATCTACAATTTACAATTAACTCTGGAGAAGAAATTCAACAACCAAGTACACGAGCAATTGAAATAAACAAAAATATTTATTTATTAAATGATTGTAAGTTTGAGAATGTATTAACTGACAATGAAAACCAACCACCACAATACATATACAACTCTAAAGAAGAAATAAAACAATCAAATCAGGCAAACGCTTTAAAAAATTATACAAAAACTCACAATGAAAAAAAATGCCAAGTTTGTGAGAAATCATTTTCTCAATTGTCCAATTTAAATCGTCATAAGTTAATTCACACAGCAGAAAAGCTCTACGAATGTAATGAGTGTGAAAAATCATTTAACCGTAAGGCTCATTTGATGATTCACACGAGGAAACATACTGGTGAGAAACCTTTTAAATGCAATATTTGCAAAGTATCATATTCTCAATTGTCTACTTTAAATCGGCATAAGTTAATTCATACCGGTGAGAAACCTTTCAAATGTAATATTTGCAAAGTATTATTTTCTCAATGGTCCACTTTAAATCGGCATAACTTAATTCATACAGGAGAAAAACCCTACAAATGTAACGAGTGTAAAAAATCATTTAGGCATAAGTTTCAATTGATTACTCACATAAGGATTCATACTGGTGAGAAACCTTTTAAATGCAATATTTGCAAAGTATCATTTTCTCAAATGACCACTTTAAATCGGCATAAGTTAATTCATACCGGTGAAAAACCTTTCGAATGTAATATTTGCAAAGTATTATTTTCTCAATTGTCGACTTTAAATCGGCATAACTTAATTCATACAGGAGAAAAACCCTACAAATGTAATGAGTGTAAAAAATCATTTAGGTATAAGTTTCAATTGACTAATCACATAAGGGTTCATACTGGTGAGAAACCTTTTAAATGCAATATTTGCGAAAAATCATTTTCTCAATTGTCCAATTTAAAAAGGCATAAGTTAATTCATTGTGACACTAAGCCTTACAAATCTGAACCAGAATAA
- Protein Sequence
- MIIDCLLLRYCAVELYGRKEIYDMLRGTKPNRKFRFRYQHRYIHNSEVEKEQSNSPTIEIKKEFDLINGCTFESIITIENVPMKLISHEKSKIRKKSYTCKYCHNTFNSKSSLTCHMETHTGRKVDSDNQHLQFTINSGEEIQQPSTRAIEINKNIYLLNDCKFENVLTDNENQPPQYIYNSKEEIKQSNQANALKNYTKTHNEKKCQVCEKSFSQLSNLNRHKLIHTAEKLYECNECEKSFNRKAHLMIHTRKHTGEKPFKCNICKVSYSQLSTLNRHKLIHTGEKPFKCNICKVLFSQWSTLNRHNLIHTGEKPYKCNECKKSFRHKFQLITHIRIHTGEKPFKCNICKVSFSQMTTLNRHKLIHTGEKPFECNICKVLFSQLSTLNRHNLIHTGEKPYKCNECKKSFRYKFQLTNHIRVHTGEKPFKCNICEKSFSQLSNLKRHKLIHCDTKPYKSEPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00340774;
- 90% Identity
- iTF_00340774;
- 80% Identity
- iTF_00340774;