Cced006059.1
Basic Information
- Insect
- Cinara cedri
- Gene Symbol
- -
- Assembly
- GCA_902439185.1
- Location
- CABPRJ010000964.1:549387-552437[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.17 1.1e+03 -0.1 0.0 23 44 104 125 102 133 0.81 2 8 0.012 76 3.7 0.1 21 44 130 153 123 157 0.88 3 8 3.8e-05 0.25 11.6 0.0 21 44 158 181 154 188 0.89 4 8 0.32 2.1e+03 -0.9 0.0 26 44 191 209 185 217 0.79 5 8 0.013 85 3.5 0.2 22 43 215 244 207 252 0.74 6 8 0.43 2.8e+03 -1.4 0.0 26 43 255 272 248 281 0.81 7 8 1.2e-05 0.081 13.2 0.0 22 43 307 328 296 338 0.88 8 8 0.1 6.7e+02 0.6 0.0 22 48 363 389 355 390 0.86
Sequence Information
- Coding Sequence
- ATGGCAAATACCCAAACAATTGTAGTAAAAAAAGAATTTGATGAAATCAATGATTGTGAATTTCATAGTATTATCACTATAGAAAATGATCCCATAGAATTAATTTTGTGTGAAAAACTAAAACTTAGAAAAAAGAAATACACATGTTACCATTGTAGTAACTCATTTTTTTCAAAATCAAAGTTAAAATACCATATGATAATACACACTGGAAGAAAAGTTGACAGTGAAAACTGCCCTCTACAATTATTTAGTAACTCTGAAGAAGAAATTAAAGAACATGGGCATGAGCTAATTTATATCGGAAAGAAACCTTTTAAATGTGATGTTTGTGAAATATTATTTACTCGATTGTCTAGTTTAAAGCGGCATAAGATAATTCACACTGGAGAAAAACCATTTAAATGTAATATTTGTCAAAAATCATATAGACTGAAATCAAATTTGGTGACACACACAAGGGTTCATACTGGTGAGAAACCATTTAAATGTGATGTTTGCAAAACATTATTTACTCAATCATTTAATTTAAATCGACACAAGTTGATTCATACAGGAGAAAAACTATTTAAATGTGATGTTTGCAAAACATTATTTACTCGATTGTCTAGTTTAAAGCGGCATAAGATAATTCACACTGGAGAAAAACCATTTAAATGTAATATTTGTCAAAAATCATATAGACTGAAATCNGAAGCATTGTTTACTCAATCATTTAATTTAAATCGACACAAGTTGGTTCATACAGGAGAAAAACTATTTAAATGTGATGTTTGCGAAACATTATTTACTCGATTGTCTAGTTTAAAGAGGCATAAGTTGATTCATACTAGAGAGAAATCATTTAAATGTGATGTTTGTCAAAAATCATATAGACTGAAATCAACTTTGATGTCACACACAAGGGTTCATACTGGTAAGAAACCATTTAAATGTGATGTTTGCGAAGCATTGTTTACTCAATCATTTAATTTAAAGCGACACAAGTTGGTTCATACAGGAGAAAAACTATTTAAATGTGATGTTTGTGAAAAATTATTTACTCGATTATCTGGTTTAAAGAGGCATAAGTTGATTCATACTAGAGAGAAATCATTTAAATGTGATGTTTGTGAAACATTATTTACTCAATTATCTAGTTTAAAGCAACACAAGTTTTTAATTCACGTGTGA
- Protein Sequence
- MANTQTIVVKKEFDEINDCEFHSIITIENDPIELILCEKLKLRKKKYTCYHCSNSFFSKSKLKYHMIIHTGRKVDSENCPLQLFSNSEEEIKEHGHELIYIGKKPFKCDVCEILFTRLSSLKRHKIIHTGEKPFKCNICQKSYRLKSNLVTHTRVHTGEKPFKCDVCKTLFTQSFNLNRHKLIHTGEKLFKCDVCKTLFTRLSSLKRHKIIHTGEKPFKCNICQKSYRLKSEALFTQSFNLNRHKLVHTGEKLFKCDVCETLFTRLSSLKRHKLIHTREKSFKCDVCQKSYRLKSTLMSHTRVHTGKKPFKCDVCEALFTQSFNLKRHKLVHTGEKLFKCDVCEKLFTRLSGLKRHKLIHTREKSFKCDVCETLFTQLSSLKQHKFLIHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00340783;
- 90% Identity
- iTF_00340783;
- 80% Identity
- iTF_00340783;