Basic Information

Insect: Cinara cedri
Gene Symbol: L
Assembly: GCA_902439185.1
Location: CABPRJ010000966.1:55835-61317[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.093 7.3 7.4 1.5 10 23 15 28 13 28 0.94

2 20 7.9e-06 0.00062 20.2 0.9 1 23 34 56 34 57 0.96

3 20 0.00012 0.0092 16.5 2.0 1 23 74 96 74 97 0.96

4 20 0.17 14 6.5 0.5 1 23 121 144 121 144 0.97

5 20 0.68 53 4.7 0.9 1 23 183 206 183 206 0.94

6 20 0.0025 0.19 12.3 3.0 2 23 376 397 375 397 0.94

7 20 7.3e-05 0.0057 17.2 2.2 1 23 405 428 405 428 0.96

8 20 0.00047 0.037 14.6 0.3 1 23 433 456 433 456 0.95

9 20 0.00079 0.062 13.9 0.8 2 23 506 527 505 527 0.96

10 20 0.073 5.7 7.7 3.6 1 23 531 553 531 554 0.96

11 20 1.3 1e+02 3.8 0.4 3 23 598 620 597 620 0.86

12 20 0.0011 0.083 13.5 4.6 2 23 634 655 633 655 0.96

13 20 0.0024 0.19 12.4 0.3 1 23 665 687 665 687 0.98

14 20 0.21 16 6.3 1.5 2 23 695 716 694 716 0.97

15 20 0.00024 0.019 15.5 0.8 2 23 790 812 790 812 0.94

16 20 1.1 87 4.0 1.1 1 23 816 838 816 838 0.96

17 20 0.063 4.9 7.9 0.1 2 23 850 871 849 871 0.95

18 20 0.0056 0.44 11.2 0.0 1 23 879 902 879 902 0.97

19 20 2.5 2e+02 2.9 0.2 1 23 909 933 909 933 0.93

20 20 1.5 1.1e+02 3.6 6.1 1 23 960 982 960 983 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.093	7.3	7.4	1.5	10	23	15	28	13	28	0.94
2	20	7.9e-06	0.00062	20.2	0.9	1	23	34	56	34	57	0.96
3	20	0.00012	0.0092	16.5	2.0	1	23	74	96	74	97	0.96
4	20	0.17	14	6.5	0.5	1	23	121	144	121	144	0.97
5	20	0.68	53	4.7	0.9	1	23	183	206	183	206	0.94
6	20	0.0025	0.19	12.3	3.0	2	23	376	397	375	397	0.94
7	20	7.3e-05	0.0057	17.2	2.2	1	23	405	428	405	428	0.96
8	20	0.00047	0.037	14.6	0.3	1	23	433	456	433	456	0.95
9	20	0.00079	0.062	13.9	0.8	2	23	506	527	505	527	0.96
10	20	0.073	5.7	7.7	3.6	1	23	531	553	531	554	0.96
11	20	1.3	1e+02	3.8	0.4	3	23	598	620	597	620	0.86
12	20	0.0011	0.083	13.5	4.6	2	23	634	655	633	655	0.96
13	20	0.0024	0.19	12.4	0.3	1	23	665	687	665	687	0.98
14	20	0.21	16	6.3	1.5	2	23	695	716	694	716	0.97
15	20	0.00024	0.019	15.5	0.8	2	23	790	812	790	812	0.94
16	20	1.1	87	4.0	1.1	1	23	816	838	816	838	0.96
17	20	0.063	4.9	7.9	0.1	2	23	850	871	849	871	0.95
18	20	0.0056	0.44	11.2	0.0	1	23	879	902	879	902	0.97
19	20	2.5	2e+02	2.9	0.2	1	23	909	933	909	933	0.93
20	20	1.5	1.1e+02	3.6	6.1	1	23	960	982	960	983	0.94

Sequence Information

Coding Sequence: ATGATTGATGATGATAATTTACGTTTTTTCGTTTGTTTTTTTTTCTCCGTCAGCGATCACTTAAAGATTCACATGAAAACGCACGACAATCAAAAACCTTTCCAGTGCACCGTGTGCAACAGAGGGTACAGCACCGCGGCCGCGCTCACGTCGCACATGCAAAACCACCACAAGCGGGCCGCGGAACGGGCCAACTCGCCGCAGATCACGGGCCCGTCCTACAAGTGTCTGCAGTGCACGCAGATATTCCGCAAGCCCGACGAGTTACAGAATCACACCGCGACGCACCATCTCGGAGAACAGCTGTCGTCGAATTCCCGAAGCTCAAAACGTTCGACACCGCCGAAAACGCCCAACCAATACATATGCATGTATTGCACCAAAGAAATGCCGAGCATGGACGCCCTGCAACAACACTTCCAGACCAAACACTCCGCCATCGTCAACGGCAAATCCCAAGAAGACGTCTTCTCGGCCATACCGTCGGCGGCGGCCGCGTTCCCGTGGCTGAACTTCGCCGATTCGCCGGCTCTGGCTTTGCCGCCCTACTCGTGTCGGCTGTGCATGAGCCAATTCCCGTCGGTCAGTTCTTTGCAAAAACACTTTACGACCGCCCACTATCTAAACTCCGTCCTCAACAACAACATTCAAAACACCAACAACAACAACAACAACAACGGGTGTAAAAACGTCGGCATGGTACCGCTGTTCAATTGGCCGACAATGACGAACGGATACCACAACAACAACAACAACAATCATCACCCGCCGCCAGCCGGTGTCAGCGCCGGTGCAAGTTTCTTGCCCGAGGAAACCGTCCAAACCGGTCCCACCGACTTGTCCGTCTCGTCGTCCAACAAACACAACGCCGGCGGCGGCGGCGGCGGTAAGCACAATCATTCGTCCTCGGGCAAGCACAAGTCGGCGGACGATCCGCGGAATCACGGGAGCAGCAAAAGGTCCCGTTCGTCGCACGGGAGCGAGTTGCTCGCCGCCCAACACGTGGTCGACCAGCGTCCCATAAAACAGGAACGCTGCGGGTATGACGGCGGCAAGCAACAGCCCCAGCAACCCTCGGTCAGGCCGACCGGGGTCGCGGGTCTCATGGGCAACAAGATCCAATTACCGTGTCCGCACTGTCATCTGACGTTCACGCACTTCGAAGACTACCAGCAACACGTCATCGGTCACTTCCTGATGGCCGCCGCCGAGTACTCGTGCCAAGAGTGTTCCACCTCGTTCAGCACGTCCGAGCACGTCCAAAAACACCTGATGGAAACTCACGCGCAAAACTTCTATCGATGCATGTTGTGCAAAGAAGTGTTCCCGACCAAAGCGGCCCTGAAGGTACACTTCAGCATGAACCACGGTAGCGAGAACCGGATGTTCCGATGCAACAACTGTACCGGGGGATCGAGACCTCTGTTTCACACGGAAATCGAATTTATCGACCATCTGAGAAACGCGCATTACTCCGCGAGATCTCCGCCACCGGTCCAAACGAGTCTTATGTTAAGATGTTTAGTATGCCACGCCACGTTCAACTCGCAATCTGATATGGAACAACATCTAGCTAGTCATTCCAAACAATTCCAATGCCAGTTTTGTTCGGAAGCATTCCATATTGAGTTCTTGTTGGACAGACACATACAAACGCATCACAGCTCTGCGATTTTAAGCCATCTTAACCGAAATCACAGGGAATCTCCAAATTCCATTTGCGCTTCGCCAACGTACATGTCCAGGTTGACCGATTCCGGCAAACACCCGACAGAAAACGGAATTAACGCGTGCGATATATGCGAAAAAAATGATTTTCGTAACGAACTAGATTTGATTACACACAAAAGAACGCAGCATCAGGTCAAACCCACGAATCTTTCAACAAAAGTGAGCTTGCACTGTGCGTATTGTAACGAAAATTGCAAATCGAGAACAGAACTGGAAAACCACATGAAAACCCATTCACAACACGGTTCGAATGTTGGAAAACACAAATGTAATATTTGCGATGAAATCTATCAGTCCGCTATTAGCTTGGCCGAACACAAACTCACTCACTGCAAGGTGGCGACAAGTACCGTGTGCAGTCACTGTAAAATGATTATCGACAACGAGGACCAATTCTATCAACATCTCCAAAAGCACTGCAACCCGGTCAATGTGAACGGCAGTCAAGTGACTTTTCCCACTTCGTGCATCATATGCAGACAAACGTTAGTCTCAGACATTGAGGTCAAAGTGCACGTGCACTATCACCTCTCACGGCTCAAAGAACCACCAGCCATGTGTAGCAATTGTAACAGGTACAAATCAAGTCCATCGTCTCCATGCACCGGTTGTAATCCTGTCAGAAATGCCACTGAAAGGTGTCCAGATTGTGGTATGACGTTCGAAACTTTCATTTCGCTACAGCACCATCTGACCAACGTCCACAGAAAACCTTTCCATTGTTTTAAATGCAAGATCGGATTTGAATTACAACAAGAAGCTACAATCCATCTCGGCACACACCTGGCCACATTAAATGGCTGCGTGGATGGTATTGAATGCGGCCTCTGCCCATGCGTGTTGCCCACAGCCAACAGTCTGCAGACACACTTGATCGAGCATACGTTTGCCGGCTGTAAGGCGTTCACATGCTACTTGTGCTCAGCGATATTTACAGCGCCAACAGGACTTCAGGCTCACATGAGCGTTGACCATTCCACAGAGACGCCACCGTATGACTGTCCTAGACCCAGCTGTCAGGCAAAGTTCTTTTTCACGGCCGAACTGGACCGCCATACACTCGAACATCAAGGACAAGACGTGCTCGCCAATATGAACTTTTACAAGTATCAAAACAAGCTGATGTCCATCTGCGATAAAATTCCATTCAAGTGTACAGAGTGCTACCAGAGTTTCTTGACGCAGACAGATTTACAGTGTCACATGTACGAGCACCACCATCAGATGCAGAGGGAATCATCGTCGGTGTCTGAGAACAAAGAAGGTGTGAAGCAAGAGGAGATAGTAGCCTGCATTGAACCAGTGAACGGTGATGTGGCAAAGGATAATGAGGTGGATGATGCAGGGGACTCTGAAAAACCGATCAAGGTGGAGAATCAGCACGAACAGGTGACCATCAAGACGGAAAAACATGAAAAAGAACACCATGACGACGACGATGACGAAGAGCTAATTGACGTGGGAGTTAACAATCGTATCGAAGTAAAATCGCGTGCGGAAAACGATGTAACTGCCACTCATTGA
Protein Sequence: MIDDDNLRFFVCFFFSVSDHLKIHMKTHDNQKPFQCTVCNRGYSTAAALTSHMQNHHKRAAERANSPQITGPSYKCLQCTQIFRKPDELQNHTATHHLGEQLSSNSRSSKRSTPPKTPNQYICMYCTKEMPSMDALQQHFQTKHSAIVNGKSQEDVFSAIPSAAAAFPWLNFADSPALALPPYSCRLCMSQFPSVSSLQKHFTTAHYLNSVLNNNIQNTNNNNNNNGCKNVGMVPLFNWPTMTNGYHNNNNNNHHPPPAGVSAGASFLPEETVQTGPTDLSVSSSNKHNAGGGGGGKHNHSSSGKHKSADDPRNHGSSKRSRSSHGSELLAAQHVVDQRPIKQERCGYDGGKQQPQQPSVRPTGVAGLMGNKIQLPCPHCHLTFTHFEDYQQHVIGHFLMAAAEYSCQECSTSFSTSEHVQKHLMETHAQNFYRCMLCKEVFPTKAALKVHFSMNHGSENRMFRCNNCTGGSRPLFHTEIEFIDHLRNAHYSARSPPPVQTSLMLRCLVCHATFNSQSDMEQHLASHSKQFQCQFCSEAFHIEFLLDRHIQTHHSSAILSHLNRNHRESPNSICASPTYMSRLTDSGKHPTENGINACDICEKNDFRNELDLITHKRTQHQVKPTNLSTKVSLHCAYCNENCKSRTELENHMKTHSQHGSNVGKHKCNICDEIYQSAISLAEHKLTHCKVATSTVCSHCKMIIDNEDQFYQHLQKHCNPVNVNGSQVTFPTSCIICRQTLVSDIEVKVHVHYHLSRLKEPPAMCSNCNRYKSSPSSPCTGCNPVRNATERCPDCGMTFETFISLQHHLTNVHRKPFHCFKCKIGFELQQEATIHLGTHLATLNGCVDGIECGLCPCVLPTANSLQTHLIEHTFAGCKAFTCYLCSAIFTAPTGLQAHMSVDHSTETPPYDCPRPSCQAKFFFTAELDRHTLEHQGQDVLANMNFYKYQNKLMSICDKIPFKCTECYQSFLTQTDLQCHMYEHHHQMQRESSSVSENKEGVKQEEIVACIEPVNGDVAKDNEVDDAGDSEKPIKVENQHEQVTIKTEKHEKEHHDDDDDEELIDVGVNNRIEVKSRAENDVTATH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01499826;
90% Identity: -
80% Identity: -