Basic Information

Insect: Cinara cedri
Gene Symbol: -
Assembly: GCA_902439185.1
Location: CABPRJ010002452.1:43846-47009[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0095 0.74 10.5 4.1 1 23 74 96 74 96 0.98

2 17 9.1e-05 0.0071 16.9 2.7 2 23 103 124 102 124 0.98

3 17 2.1 1.6e+02 3.2 0.4 8 23 137 152 136 152 0.95

4 17 0.044 3.5 8.4 3.6 2 23 158 179 157 179 0.94

5 17 2.4e-05 0.0019 18.7 0.3 2 23 186 207 185 207 0.97

6 17 2.2e-06 0.00017 22.0 2.0 1 23 213 235 213 235 0.98

7 17 1.1e-06 8.6e-05 22.9 2.1 1 23 241 263 241 263 0.99

8 17 1.6e-06 0.00012 22.4 3.9 1 23 269 291 269 291 0.98

9 17 1e-06 8e-05 23.0 2.1 1 23 297 319 297 319 0.99

10 17 3.8e-06 0.0003 21.2 1.3 1 23 325 347 325 347 0.98

11 17 4.3e-07 3.4e-05 24.2 2.0 1 23 375 397 375 397 0.98

12 17 6.8e-06 0.00053 20.4 2.2 1 23 403 425 403 425 0.97

13 17 1.1e-06 8.8e-05 22.9 4.9 1 23 431 453 431 453 0.98

14 17 1.5e-06 0.00012 22.5 2.2 1 23 459 481 459 481 0.99

15 17 4.3e-07 3.4e-05 24.2 2.0 1 23 487 509 487 509 0.98

16 17 6.2e-05 0.0049 17.4 1.6 1 23 515 537 515 537 0.97

17 17 1.6e-06 0.00012 22.4 3.9 1 23 543 565 543 565 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0095	0.74	10.5	4.1	1	23	74	96	74	96	0.98
2	17	9.1e-05	0.0071	16.9	2.7	2	23	103	124	102	124	0.98
3	17	2.1	1.6e+02	3.2	0.4	8	23	137	152	136	152	0.95
4	17	0.044	3.5	8.4	3.6	2	23	158	179	157	179	0.94
5	17	2.4e-05	0.0019	18.7	0.3	2	23	186	207	185	207	0.97
6	17	2.2e-06	0.00017	22.0	2.0	1	23	213	235	213	235	0.98
7	17	1.1e-06	8.6e-05	22.9	2.1	1	23	241	263	241	263	0.99
8	17	1.6e-06	0.00012	22.4	3.9	1	23	269	291	269	291	0.98
9	17	1e-06	8e-05	23.0	2.1	1	23	297	319	297	319	0.99
10	17	3.8e-06	0.0003	21.2	1.3	1	23	325	347	325	347	0.98
11	17	4.3e-07	3.4e-05	24.2	2.0	1	23	375	397	375	397	0.98
12	17	6.8e-06	0.00053	20.4	2.2	1	23	403	425	403	425	0.97
13	17	1.1e-06	8.8e-05	22.9	4.9	1	23	431	453	431	453	0.98
14	17	1.5e-06	0.00012	22.5	2.2	1	23	459	481	459	481	0.99
15	17	4.3e-07	3.4e-05	24.2	2.0	1	23	487	509	487	509	0.98
16	17	6.2e-05	0.0049	17.4	1.6	1	23	515	537	515	537	0.97
17	17	1.6e-06	0.00012	22.4	3.9	1	23	543	565	543	565	0.98

Sequence Information

Coding Sequence: ATGGTTGAAGGCGCAACATCTTATAATCCTTGTTATGAAGATAAATCAAAGCAACTAGGATTTGTATATAACTCTAAACAGGTAGATGAAGAAATAAATATCCATGTTAAAAAAGAGGTAGACGTCATTGATGGTTTCGTTTATGAGAGTGAGATTGTTATTGAAACTGATCCAATAAAATCTTTTTTGAATCAAGAATTACAATTTGAAGAAAAATATTTTGAATGCTCTTACTGTAGTAACTTATTTTTTTCAAAATCGCATATAAAAAACCACTTGAAAGTTCATAGTGATGTAAGACTTCAGAAATGTAACATCTGTGAGAAGACATATTCTTTAAAACAAAATTTAGACAAACATAAGAAAACTCATTCGGGAGATAAACTTTATGAATCTAAAGAGCGCGAAAAGACATTTACTCAGTTATCCACTTCAAAGAACCATATAGAAACACATAAGGGAAAGCCCTGTAAATGTAGTATGTGTACAAAGACATTTTCTCTTAAAACCATTTTAAATGTCCATGAGACAACTCATACAGAGGAAAAGCTCTCTGTATGTGGCATATGTAAGAAGACATTTATCAATGAAACCACTTTAAAGGTCCATGAAAGAATTCATACAGGAGAAAAGCCTTATGAATGTAATTTTTGTAAGAAGTCATTTTCAAGAAAGGATCTTCTAAATATACATAATTTAACTCATAAAGAAAATAAATCTTATAAATGTGATATTTGTAAGAAAACATTTACTGTTAAAAACACTTTAAAGAACCATGAAAGAATTCATACAGGAGAAAAGCCGTATGAATGTAATTTTTGTAAGAAGTCATTTGCAAGAAAGGACCATTTAAATGTACATAAATTAACTCACTTGGAAGAAAAACCTTATAAATGTGATATTTGTAAGAAAACATTTACTGTTAAAAACACTTTAAAGAACCATGAAAGAGTTCATACAGGAGAAAAGCCGTATGAATGTAATTTTTGTAAGAAGTCATTTGCAAGAAAGGATCTTCTAAATATACATAATTTAACTCATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGAATTCATACAGGAGAAAAGCTTTATGAATGTAAATTGTGTAATAAGGCATTTACTCAGCGATCCTATTTAACATTACATTTAAAATCTCATTCGGAAGAGAAGCCTTTTAAATGTGACATTTGTAACAAAACTTTTGCTTTTAAAAAAACTTTAAAGGCCCATAAAACTATTCATACAGGAGAAAAGCCTTATGAATGTAACTTTTGTAAGAAATCATTTTCAAGAAAGGACCATTTAAATGTACATAAATTAACTCACTTGGAAGAAAAGCCTTATAAATGTGATATTTGTAAGAAAACATTTACTGTTAAAAACACTTTAAAGACACATGAAAGAATTCATACAGGAGAAAAGCTTTATGAATGTAAATTGTGTAATAAGGCATTTACTCAGCGATCCTATTTAACATTACATTTAAAATCTCATTTGGAAGAAAAGCCTTTTAAATGTGACATTTGTAAGAAAACTTTTGCTCTTAAACAAACTTTAAAGACTCATGAAACAATTCATACAGGAGAAAAGCCGTATGAATGTAATTTTTGTAAGAAGTCATTTGCAAGAAAGGACCATTTAAATGTACATAAATTAACTCATATTAAAAAAAAGCCTTTAGAAAATAATATGAGTCCATTAATATTTTCTTAG
Protein Sequence: MVEGATSYNPCYEDKSKQLGFVYNSKQVDEEINIHVKKEVDVIDGFVYESEIVIETDPIKSFLNQELQFEEKYFECSYCSNLFFSKSHIKNHLKVHSDVRLQKCNICEKTYSLKQNLDKHKKTHSGDKLYESKEREKTFTQLSTSKNHIETHKGKPCKCSMCTKTFSLKTILNVHETTHTEEKLSVCGICKKTFINETTLKVHERIHTGEKPYECNFCKKSFSRKDLLNIHNLTHKENKSYKCDICKKTFTVKNTLKNHERIHTGEKPYECNFCKKSFARKDHLNVHKLTHLEEKPYKCDICKKTFTVKNTLKNHERVHTGEKPYECNFCKKSFARKDLLNIHNLTHKXXXXXXXXXXXXXXXXXXRIHTGEKLYECKLCNKAFTQRSYLTLHLKSHSEEKPFKCDICNKTFAFKKTLKAHKTIHTGEKPYECNFCKKSFSRKDHLNVHKLTHLEEKPYKCDICKKTFTVKNTLKTHERIHTGEKLYECKLCNKAFTQRSYLTLHLKSHLEEKPFKCDICKKTFALKQTLKTHETIHTGEKPYECNFCKKSFARKDHLNVHKLTHIKKKPLENNMSPLIFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00340749;
90% Identity: iTF_00340749;
80% Identity: iTF_00340749;