Cced019168.1
Basic Information
- Insect
- Cinara cedri
- Gene Symbol
- -
- Assembly
- GCA_902439185.1
- Location
- CABPRJ010001925.1:165923-170003[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.2e-16 1.8e-13 50.0 0.5 10 72 16 72 11 76 0.93 2 3 1.1e-15 8.8e-13 47.8 0.2 10 72 189 245 182 249 0.91 3 3 1.1e-06 0.00087 19.0 0.1 38 72 306 337 304 341 0.90
Sequence Information
- Coding Sequence
- ATGGATCCAAAGTCCAAAATGCCAATGGATCCAATTTTCAACAGGCCATTTGAATATGGTTGGAAAAGAGAGGTGGTATATAGGACCAATGGAAATGCAATTGATATATATTACCGTACACCAGATAAAAAGAAACTAAGATCGAAACCGGAAGTACGTGAATATTTAAAGCAAAGAACGCGATTGAAAATAGAGAATTTCACGTTTAAAAGAAAAGCCCTAGGTTTAGACAATTCCAAGGAAATATGCAGAAACGCTTATTCAACTGAAAGAGCTGAAAATAATCGTGGTGGAAACGAACCGGACAACACCACTCCACTATTTTCCCCTTTTCTTCTCAAAAGAGACTTCTCCTTTCATTTCGACGTTATTCTATCGCACTGGAAGTCGTCATCGGTTTACCGCCTGTCTTCATCAAGCGAAAATCTCGGGAGGTCGAACGATCGTTTTATATTTGAAGAACTAACCTTATCATCTACGCCTACGAATCACAGTGGTTTTGGCTCTAAAACAAGTTTAATGGATCCCAAGTCCAAAATGCCAATGGATCCAAAATTCGATAGGCCATTTGATTTTGGTTGGAAAAGAGAGGTGGTATATAGGACCAATGGAAATGCAATTGATATATACTACCGTACACCAGATAATAAGAAGCTACGATCGAAACCGGAAGTACGTGAATATTTAAAGCAAAGAACCCGATTGAAAATAGATAATTTCACGTTTACAAGAAAAGCCCTAGGTTTAGACAATTCCAAGGAAATATGCAGAAACGCTTATTCAACTGAAAGAGCTGAAAATAATCGCGGTGGAAACGGTATAAATAATGTAGAAAACCAAATTGTACAGTTAACTATTGAGGAGAAAAACTCAATAATGATCAATCCTGTTCTACGAGTACTGGCAAAACTGNCACCAGATAAAAAGAAACTAAGATCGAAACCGGAAGTACGTGAATATTTAAAGCAAAGAACGCGATTGAAAATAGAGAATTTCACGTTTAAAAGAAAAGCCCTAGGTTTAGACAATTCCAAGGAAATATGCAGAAACGCTTATTCAACTGAAAGAGCTGAAAATAATCGTGGTGGAAACGGTATAAATAATGAAAATTATTTTTAG
- Protein Sequence
- MDPKSKMPMDPIFNRPFEYGWKREVVYRTNGNAIDIYYRTPDKKKLRSKPEVREYLKQRTRLKIENFTFKRKALGLDNSKEICRNAYSTERAENNRGGNEPDNTTPLFSPFLLKRDFSFHFDVILSHWKSSSVYRLSSSSENLGRSNDRFIFEELTLSSTPTNHSGFGSKTSLMDPKSKMPMDPKFDRPFDFGWKREVVYRTNGNAIDIYYRTPDNKKLRSKPEVREYLKQRTRLKIDNFTFTRKALGLDNSKEICRNAYSTERAENNRGGNGINNVENQIVQLTIEEKNSIMINPVLRVLAKLXPDKKKLRSKPEVREYLKQRTRLKIENFTFKRKALGLDNSKEICRNAYSTERAENNRGGNGINNENYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -