Cced012224.1
Basic Information
- Insect
- Cinara cedri
- Gene Symbol
- bab2
- Assembly
- GCA_902439185.1
- Location
- CABPRJ010000483.1:907476-918439[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.1e-12 1.4e-08 34.4 0.0 2 38 423 460 422 465 0.89 2 4 3.4e-12 9.4e-09 35.0 0.1 2 39 477 514 476 517 0.94 3 4 5.3e-17 1.5e-13 50.4 0.0 3 45 533 576 531 576 0.97 4 4 2.2e-17 6.1e-14 51.6 0.1 1 43 583 626 583 628 0.96
Sequence Information
- Coding Sequence
- ATGACAGTTAACGGCCAGCATTACTGTCTGCGTTGGAACAATTACCAATCGAACATGACCTCTGTATTTCATCAACTTCTCCGGAATGAGTCTTTTGTTGATGTCACACTTGCTTGTAATGAGAGCACACTTAAAGCACATAAAGTAGTCTTATCGGCTTGTTCCTCATACTTCCAAAAACTATTAATGGATAATCCATGTAAACATCCGACCATTATACTACCATATGATGTTTGTTTCAATGATCTCAAGTTTATTATTGAATTTGTATACAGGGGTGAAATTGATGTGTCTCAAGCTGAATTACAATCTCTTCTAAAAACAGCAGACCAATTAAAGATAAAAGGATTATGTGAAGTGCCCGAAGACGAGCGTGATACGTCTATTGTTGCTGAAGTAACTCCTCTGGGGCCGTTAAAAAGTGGAGGACGGGTGTTTACCAAATTACAACGTAGAACTTCACCGTATTCAAAAAAATTAAGTCCCAATCACATTCAACAAGATCAGTTTAATCGTAATTATTATCGTATTGAACAATCGGGTTTTGCGCCTATCAATGTTGATCAAGAAAATAAATCTATGAATTCGATTCATTGCATGACTGTAGCTACATCAACTGAAGACGATGAGAAAGATATGAAATCAACCCTGACAGATTTACCAGTTGTTATATTGGAACCTCATCCTACCATAAGTTTACATACTCAACAGCAGCCTCAGATAGTTCATATACCAATACCCCAACAACAACAATTAAACCATGTTACTCAACATACAAACCAACCGCAGCTGCAACGAGCTGCAGTTCAAACTCATTCACAGATGATAATTACAACAGGTCCAGTTATGACAGTTAATGAAGCAGATATTACCCCTGATTTACAGCCTGTCGGTCCTAGGGCAACACCAGTACCAGTAAAAAATAACCCTAGCCCTTCATCAACACCTACACATAGAGATATAGCTGTTGGTACATCATGTTCAAATGATGTGATGAGAAGTGATGGAAGTGAAGTGAAGTTTGAAAGTTCAAAATTTGAAACACTCCGAACCATTGATCAATCATCAGATGCAATTAGAATAGAAAGGCAGCATTCAAAGGATCGTAATATCAATGATGAAGATAGCTCAATGCACACAATGATGATAACGCCAGAACTGTTAGGATTATTACCAAATTCTTCTAATACAGGAGATACCAGTGAAGATGGTTCTAGTAACAATATAAACAAACAATATGGTGTGAATGGCAGTAAAGGATGGACGGCTGATGACATGGAGAACGCCTTAGAAGCATTACGTTCGCATAATATGTCTTTGACTAAAGCATCCATCACATTTGGAATTCCTTCTACAACATTATGGCAACGTGCTCATAGAGCTGGAATAGATACTCCTAAAAAAGATGGACCTGCTAAATCTTGGAATGATGAAGCATTAAATGTTGCATTGGATGCTTTGCGTACTGGTACTATTTCAGCAAATAAAGCCAGTAAGGCTTATGGCATTCCCAGTAGTACTCTGTATAAGATTGCGCGCCGGGAAGGTATTCGATTAGCTGCTCCCTTTAATGCAGCACCTACATCTTGGGGTCAGGAACAATTGGACCAAGCATTACACGCTATACGGACCGGGCAAACAACTGTGCAACGAGCTGCTTCTGACTTTGGCATACCTTCTGGTACACTCTATGGCCGGTGTAAACGTGAAAAAATTGAATTGTCCCGTAGTAATCCCACACCATGGTCTGAAGATGCTATGATGGAAGCTCTTGAATCTGTACGTTTAGGTCACATGAGCATTAATCAGGCTGCAATACATTACAATTTACCATATTCTTCATTATATGGTCGTTTTAAGAGGGTTAAATATGGAGCTGGACATCCAGATGATGATTGTGATGACATGATCGATTCAGACACACAAGGTGAACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTATGCTAGTTCAGTATCCTGCGCCACAAATTCAAATGTATCAACATCATCCAACTCATTCAACTAGTTGA
- Protein Sequence
- MTVNGQHYCLRWNNYQSNMTSVFHQLLRNESFVDVTLACNESTLKAHKVVLSACSSYFQKLLMDNPCKHPTIILPYDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPEDERDTSIVAEVTPLGPLKSGGRVFTKLQRRTSPYSKKLSPNHIQQDQFNRNYYRIEQSGFAPINVDQENKSMNSIHCMTVATSTEDDEKDMKSTLTDLPVVILEPHPTISLHTQQQPQIVHIPIPQQQQLNHVTQHTNQPQLQRAAVQTHSQMIITTGPVMTVNEADITPDLQPVGPRATPVPVKNNPSPSSTPTHRDIAVGTSCSNDVMRSDGSEVKFESSKFETLRTIDQSSDAIRIERQHSKDRNINDEDSSMHTMMITPELLGLLPNSSNTGDTSEDGSSNNINKQYGVNGSKGWTADDMENALEALRSHNMSLTKASITFGIPSTTLWQRAHRAGIDTPKKDGPAKSWNDEALNVALDALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWGQEQLDQALHAIRTGQTTVQRAASDFGIPSGTLYGRCKREKIELSRSNPTPWSEDAMMEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRVKYGAGHPDDDCDDMIDSDTQGEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIMLVQYPAPQIQMYQHHPTHSTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00184731;
- 90% Identity
- iTF_01330472;
- 80% Identity
- iTF_00340713;