Clec005238.1
Basic Information
- Insect
- Cimex lectularius
- Gene Symbol
- ZNF341
- Assembly
- GCA_000648675.3
- Location
- NW:118362-124624[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0046 53 3.4 0.0 26 44 223 241 214 245 0.88 2 4 0.0045 52 3.5 0.0 21 44 246 269 241 274 0.86 3 4 2.7e-05 0.3 10.6 0.5 26 50 429 452 417 455 0.87 4 4 0.0002 2.3 7.8 0.1 19 43 478 502 462 509 0.83
Sequence Information
- Coding Sequence
- atggCTCAAATTTTTTACACAGCTCTTCctgTTGTAGGAGGTGATCAGCAGCAGGCAGAATTAGATTTTCATAACCTGTTTCAGCCGATGATTTCTCTTAATTCCGATGTTCAAGACAATAGCATTATACTCGATGAAGGTGATGTATTTCAATGTGGAAAGTGTCgaaataagttttctttttctgattttgttcTTCACAAAAAAAGCAACTGTCAAGGTAATCTCGTCCTAACAAATTCAGAAGAGTATAACATTGATGAAGTGAGAGAATTAAACGAAGAAATAGAGTCTCCGATAATTCTTGATGGAAGCAATTTAATCACACTTATGCAGGACAATGAAAATGATTCAGCAAATTTGTGTCAAaactatCTGgatattcaaaatgaaattaatgaaacatCAATCAATTTGGAATGCAAATCTTACCGCATTGTGAACGATATACCAAACATCgaagtgaataattttttacaggACAGTTACAGTTTAAGGGACGATAAAGTCAATCAATGTATATTACAGGATAATGGTGAGATAGATTATTTCAGTGGTTCATTCACAAGAAAAGATAAGTGTGATGTAAATGATACGAAAGTATTTGAGACTTTAGTCAAACAAAAAGGGAACAGAAATGTAGAGAATAAAACAGACAACGTGTTGAAGTGCTCATTTTGTGATAAAGTATTTCGTAAGAATTTCAATCTGCAACAACACATCAGAAGTCATACTGGAGAACGTCCATTTTTATGCGTAATTTGCGGAAAAGCATTTACACAGAAGTCTAATGTTATCAAACACATGGGTACGCACAAAGTCTGGCCAAAAAAGATTTGCAATTTGCCTAAATTTCACGTTCATGTCAATTCAACGGAAACGTCAGTTACTGCGTATCAGGTTGCAGGTGATAAGACTTTTATTGCATTTGATAAGACGTTCTTTTGTCAGTATTGCCCTAGTGCCTTTAGCAATTATAGCGACTGGAGGCTTCATATGAAATCACATGTCAATGTCAAAgtgtataaatgtattcagAATGCCTGTGATTCAACATTTTCTGATTTGGACCAATTTCTTGAACATACTCAAACACATTGGGGAATGGCTCAGTATACATGTCATATTTGCCAATTGGAATTTCATTCTCTTGACGAGCTCGGCCTCCATCAAACTTCTCACACACTAGAAACAAAAAAGGCTGCcaagagtttttcATGCCGAAAATGTGGatctaaatttacaaaagaatccACCTTTAGTGAACATAAATGTAATGTCTATTCGTGCCCATTGTGCAACCGCACATTCCACTCCGTACGGTTTTTGAGAAGACACTTAGCTCTGCATAGTGCAACACCCTCGTATCCATGTCCTGATTGTGATAAAGCTTTTAAAACGCCTAAATATCTATCAGCTCATCGTCTCATACACTCGTCTGAAAAACCGTATAACTGCCAGatttgttCGGCTGCTTTTAATCGTAGGGACAAATTAGTCAGGCACAGCTTGACACACACAAATGAAAAGCAGTTTAAATGTCCTTTCTTTAATAAAGGATGCACAAAAGAATATAATAGAAaggacAAACTTAAACAACACATAACTCATACTCATAATTCTAATAAGCCAGTCTTCCAACAATCAGCAGAGCACCCAAAAATCTGA
- Protein Sequence
- MAQIFYTALPVVGGDQQQAELDFHNLFQPMISLNSDVQDNSIILDEGDVFQCGKCRNKFSFSDFVLHKKSNCQGNLVLTNSEEYNIDEVRELNEEIESPIILDGSNLITLMQDNENDSANLCQNYLDIQNEINETSINLECKSYRIVNDIPNIEVNNFLQDSYSLRDDKVNQCILQDNGEIDYFSGSFTRKDKCDVNDTKVFETLVKQKGNRNVENKTDNVLKCSFCDKVFRKNFNLQQHIRSHTGERPFLCVICGKAFTQKSNVIKHMGTHKVWPKKICNLPKFHVHVNSTETSVTAYQVAGDKTFIAFDKTFFCQYCPSAFSNYSDWRLHMKSHVNVKVYKCIQNACDSTFSDLDQFLEHTQTHWGMAQYTCHICQLEFHSLDELGLHQTSHTLETKKAAKSFSCRKCGSKFTKESTFSEHKCNVYSCPLCNRTFHSVRFLRRHLALHSATPSYPCPDCDKAFKTPKYLSAHRLIHSSEKPYNCQICSAAFNRRDKLVRHSLTHTNEKQFKCPFFNKGCTKEYNRKDKLKQHITHTHNSNKPVFQQSAEHPKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00340099;
- 90% Identity
- iTF_00340099;
- 80% Identity
- iTF_00340099;