Cpro016130.1
Basic Information
- Insect
- Chymomyza procnemis
- Gene Symbol
- ken1
- Assembly
- GCA_035046065.1
- Location
- JAWNOJ010000036.1:1545472-1547682[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.01 0.72 10.4 3.8 2 23 221 242 220 242 0.96 2 12 0.0019 0.14 12.7 0.2 1 23 248 273 248 273 0.92 3 12 0.0046 0.33 11.5 0.1 3 23 282 305 280 305 0.93 4 12 0.0012 0.087 13.3 1.7 2 23 318 339 317 339 0.97 5 12 1e-05 0.00072 19.9 0.6 1 23 346 368 346 368 0.98 6 12 0.006 0.43 11.1 0.1 1 23 374 396 374 396 0.98 7 12 0.036 2.6 8.7 2.5 1 23 402 425 402 425 0.97 8 12 0.011 0.78 10.3 4.0 1 23 431 453 431 453 0.96 9 12 0.00064 0.046 14.2 2.8 2 23 460 481 459 481 0.96 10 12 1.4e-05 0.00099 19.4 1.1 1 23 578 601 578 601 0.96 11 12 0.0032 0.23 12.0 1.1 1 19 607 625 607 629 0.95 12 12 1.6e-05 0.0012 19.2 0.3 1 23 635 657 635 657 0.98
Sequence Information
- Coding Sequence
- ATGGCTACGAGCATTAACTGCTCCATAAATTCCATGTGTCGAACATGTTTGGCTTATTTAACGAAAGGCGACACATATGATCTGTTTTCGGTGCCCAATCTTGCCAAGAAATTTACGGTTTGCACATCATTATCAGTTGAGCCGCTGGACGGCTTTCCGAGGAACATTTGTGCTGCTTGTTTTGCCAAGTTAAATGACTTGTACGATTTTCAGCGGCTTTGCGTAGATGCAGTTCAACAATTTCGGAAAATGCTAACCGATAATAGACACACATGCGAAGTTAGTGTAATAGATGTACCTGAGCCGCCCCAGATTGATATGTATTTGCAAGACAAGTCTGATTTGCCAAACTACGATCCTCTAATAAATCACAAGATGGAACTTATAGAAAACGAAGAAGATGTGTTCAAAATGCTTGAAACTGTTGATAAAGAAGCTAAAGAAGTCGAAAAAGCGGTGCAACTTGTTAAGCATAAACTAATATTTGGCGAAGAATCAAAAGGTAATTGCAGCGACAGTGACGATATTAATGAGGACGATATGCCTTTAGCCCACCGTTCTTGGGATAAAAATACAGAGAACGTATCGGAAATACCTGTTTTGCAAGAACAAGTCCCAAAACCCACATCATCTTCAGAACCCCTTCTACGGCGTattattgtttgtaaaatttgcaaacaaaagtttaaaaagcaaattaaatttgatgaGCATATGAAACATCACAACGACTTGCTGCCTTTTCAATGCAAAGTGGAGTCCTGTAAAAAGGGATTTACCACGGCAGGTGCCTTACGTCTTCACGTCGACTATGCACATAATCAAAATGCAGAAGCAATTGCTTGCACCGTTGAGGGCTGTAAACTGGTGTTTCCACGTCTACGGCTTTTGACCATTCACCTGAAAAAGGTGCACAATTTGCAAAAGAGTACAACGCCCCGTGTTGAACAAAAATGTAGTGAATGCGGCATGATATTTCGATGCCCCGTAGCCTTAAAAAAGCACATGTACAAGCATACTGGCCAAGAACTTCCTTATCCTTGTAACATTTGTGGCAAGGGTTTCCACATAAACAGTGCACTAAAGAATCATCTTTTACGTCACGCTGGCATTAAGAACTATGTCTGTCCCTATTGTGGTGTGGGTAAAACAACGCGCCAAGAATGGAGTAAACACATTTTGACACATACACAGGAGAAAATGTTCAAGTGCCAGCTTTGCGAGCATGCAACTCATACGAAACGAGCGCTGGACAATCATATAAAGATAGTTCATGAGAAAATAAGAAACTTTGCATGCCAATATTGTGGAAAAACCTTTGGAAAGTCCCACGCCTGCAAGATTCACGAGATGACACATACAGGTGAAAAGCGTTGTGAGTGCAAAGTATGCGGGAAAAAGTTCCTTTACACAGAAAGCTTGACaaggcatttaaaaattcatggAAGAAGTGTTGAACGAGCTATAGAAACTTACAGGCAACGACAAGAAGAGCTTTGTGCAGAAAAACCAGCCAATGTTCAAAATACTTGTAGCGCCCAGTCGACTCCTACAGATCAGCTAATGAAAGTTTGTGCCGAGTCTGTGGCCACTATACCAAGAGACCCTAGACGTGTTGAGCGCGTTGATATAGCCCAATTAGCTGGCACTGTTGTCAACCCAATATCTTTAGTTTCGTTGCCAACTACTGTATCCGCACCCGATGTGAAGTTTGTACAAAGAGAAGGCATGCATGTTTGTCCCGATTGTAATCAAGGTTTTAACAACCTTGGCAATATGAAGCGCCATTACAAAAGCGTACATGAGAAAGTCAAAGATTTTGAGTGTCGCTTTTGTTCTAGAAGATTTGCAAATTCTCAATCGTTAAAGCAACATGAATGGATACACACGGGTGAGAAGCCCTACGCGTGCAAAACTTGCGGTAGCAAGTTTAGGCAAGAAGCAGCTCTTATTCGACACCAGAAGGTTCATACAGAAAAGCCACCAAAACCCCCGAAGCGTCCAAAACTTTTAACTGAAAAAGATAGAGAGAAGCAACTTCACAAATCGGATCAACGACGAAAGGTTGAAGCCAGGCGTAAGGAAATAGCAAAGGCCGCTCAAGAGCAGTTATTGGACTTGGCAAAACAAAGGGAACTCGAGAAGAATCAAAATACTTATGAACAGTATCAAACGGCtgcagctgaaaaaaaaacagttgctTGTGAATAG
- Protein Sequence
- MATSINCSINSMCRTCLAYLTKGDTYDLFSVPNLAKKFTVCTSLSVEPLDGFPRNICAACFAKLNDLYDFQRLCVDAVQQFRKMLTDNRHTCEVSVIDVPEPPQIDMYLQDKSDLPNYDPLINHKMELIENEEDVFKMLETVDKEAKEVEKAVQLVKHKLIFGEESKGNCSDSDDINEDDMPLAHRSWDKNTENVSEIPVLQEQVPKPTSSSEPLLRRIIVCKICKQKFKKQIKFDEHMKHHNDLLPFQCKVESCKKGFTTAGALRLHVDYAHNQNAEAIACTVEGCKLVFPRLRLLTIHLKKVHNLQKSTTPRVEQKCSECGMIFRCPVALKKHMYKHTGQELPYPCNICGKGFHINSALKNHLLRHAGIKNYVCPYCGVGKTTRQEWSKHILTHTQEKMFKCQLCEHATHTKRALDNHIKIVHEKIRNFACQYCGKTFGKSHACKIHEMTHTGEKRCECKVCGKKFLYTESLTRHLKIHGRSVERAIETYRQRQEELCAEKPANVQNTCSAQSTPTDQLMKVCAESVATIPRDPRRVERVDIAQLAGTVVNPISLVSLPTTVSAPDVKFVQREGMHVCPDCNQGFNNLGNMKRHYKSVHEKVKDFECRFCSRRFANSQSLKQHEWIHTGEKPYACKTCGSKFRQEAALIRHQKVHTEKPPKPPKRPKLLTEKDREKQLHKSDQRRKVEARRKEIAKAAQEQLLDLAKQRELEKNQNTYEQYQTAAAEKKTVACE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336154; iTF_00336954; iTF_00338587; iTF_00337762;
- 90% Identity
- -
- 80% Identity
- -