Basic Information

Insect: Chymomyza amoena
Gene Symbol: ken1
Assembly: GCA_037043745.1
Location: JBAMAX010002407.1:124537-126756[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.015 1.4 10.0 3.4 2 23 223 244 222 244 0.96

2 12 0.00064 0.06 14.3 0.2 1 23 250 275 250 275 0.93

3 12 0.0077 0.71 10.9 0.1 2 23 283 307 282 307 0.94

4 12 0.0011 0.1 13.5 1.4 2 23 320 341 319 341 0.97

5 12 1.1e-05 0.001 19.9 0.6 1 23 348 370 348 370 0.98

6 12 0.0064 0.59 11.1 0.1 1 23 376 398 376 398 0.98

7 12 0.064 5.9 8.0 4.2 1 23 404 427 404 427 0.97

8 12 0.011 1.1 10.3 4.0 1 23 433 455 433 455 0.96

9 12 0.00097 0.09 13.7 2.9 2 23 462 483 461 483 0.96

10 12 2.5e-05 0.0023 18.7 0.9 1 23 581 604 581 604 0.96

11 12 0.0034 0.32 12.0 1.1 1 19 610 628 610 632 0.95

12 12 2.2e-06 0.00021 22.0 0.4 1 23 638 660 638 660 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.015	1.4	10.0	3.4	2	23	223	244	222	244	0.96
2	12	0.00064	0.06	14.3	0.2	1	23	250	275	250	275	0.93
3	12	0.0077	0.71	10.9	0.1	2	23	283	307	282	307	0.94
4	12	0.0011	0.1	13.5	1.4	2	23	320	341	319	341	0.97
5	12	1.1e-05	0.001	19.9	0.6	1	23	348	370	348	370	0.98
6	12	0.0064	0.59	11.1	0.1	1	23	376	398	376	398	0.98
7	12	0.064	5.9	8.0	4.2	1	23	404	427	404	427	0.97
8	12	0.011	1.1	10.3	4.0	1	23	433	455	433	455	0.96
9	12	0.00097	0.09	13.7	2.9	2	23	462	483	461	483	0.96
10	12	2.5e-05	0.0023	18.7	0.9	1	23	581	604	581	604	0.96
11	12	0.0034	0.32	12.0	1.1	1	19	610	628	610	632	0.95
12	12	2.2e-06	0.00021	22.0	0.4	1	23	638	660	638	660	0.98

Sequence Information

Coding Sequence: ATGGCTACGAGCATTACTTGCTCAGTAGACTCAATGTGTCGGACATGTTTGGCTTATTTGACAAAAGGCAACACATATAACTTGTTTTTGGTGCCTAATCTTGCCAAGAAATTTACGGTTTGCACATCCTTATCTGTTGAGCCGCAGGACGGCTTTCCGAGAAACATTTGTGCTGGTTGTTACACGAAATTAAATGATTTGTATGATTTTCAGCGGCTTTGTGTGGAGGCAGTTCAACAATTTCGGAAAATGCTAACCGATAAGATGCTCATATGCGCAGTAAATGCTGTGGATGTAGTTGAGCCATCCCACAATGAATCGTATTTGCAGGACAAATCGGATATAACAAACTATGATCCTTTATTAAATCACAAGATGGAACTTATTGAAAACGAGGAGGATGTGTTCAAAATGCTTGAAACTGTTGATAAAGAAGCTAAGGAGGTGGAAAAGGAAGAGGAATTTGTAAAGCATAAGCTAGTCTTTAGCGAAGAATCCGCAGGAAATAGCAGCAGTGATGATTATGACGATGACGATATGCCTTTAGCCCAACGTCTATGTAATAGAAGTACAGACAAAGAATCGGAACTAACAGTTCAAACCCCAAAGCCAAACGCTCAACCACACGCCATATCTTCCACAAAACGCCGCCTGCGACGTATTATAGTTTGTCAAATTTGCAAACAGAagttcaaaaaacaaattaaatttgacgAGCATATGAAACATCACAACGACCTGCTCCCATTTCAATGCAAAGTGGAAACTTGTAAAAAGGGATTCACCACTGCAGGTGCCTTACGCCTTCACGTAGACTACGCGCATTCCCAAAATGCAGAAGAAATTACCTGCACGGTTGAGGGCTGTAAACTAGTATTTCCACGTGTGCGTCTTTtgactatacacttaaaaaaggTGCACAATCTGCAAAGAAGTATAACGCCCCGTGTTGAACAACAATGTAGCGAATGCGGCATGATATTTCGCTGCCCTGTGGCCTTGAAAAAACACATGTACAAGCATACTGGCCAGGAGCTTCCTTATCCTTGCAACATTTGCGGCAAGGGTTTTCACATTAACAGCGCACTAAAGAATCATCTTTTACGTCACGCTGGCATTAAGAACTATGTCTGCCCCTATTGTGGTGTGGGTAAAACAACGCGCCAAGAATGGAGTAAACATATTTTGACACATACAcaagaaaaaatgttcaaatgcCATCTTTGCGAGCATGCAACTCATTCGAAGCGAGCGCTGGACAATCATATAAAGATAGTTCATGAGAAAGTTAGAAACTTTGCCTGCCAATATTGtggaaaaacttttggaaaGTCTCACGCCTGCAAAATACACGAGATGACACATACAGGAGAAAAGCGCTGCGAGTGCAAGGTGTGCGGCAAGAAGTTCCTATACACAGAAAGCTTGACCAAGCATCTTAAGATTCACGAAAAAAGTGTAGATCGTGCCATAGAGACGTACAGACAACGTCAAGTGGAGCTTTGTGCAGAAAAACCAGCCAATATTCCAAATAGCAATAATAACACCGAGTCCAATCCTACAGATCAACTATTGAAAGTGTGTGCAGAGTCGGTCGCCACTATACCACGAGACCCCAGACGTGTTGAGCTTGTTGACATAGCCCAATTAGCTGGCACTGTTGTTAATCCAATATCTTTGGTATCATTACCAACTACAGTAGCCTCAGAagatataaagtttgtgcaaaaagAAGGCATGCATGTTTGTCCCGGATGTAATCAGGGCTTTAACAATCTGGGTAATATGAAGCGTCATTACAAAAGCGTGCATGAGAAAGTCAAAGATTTTGAGTGTCGTTTTTGTTCCAGAAGATTTGCAAATTCCCAATCGCTAAAGCAACACGAATGGATACACACAGGTGAGAAGCCCTATGCGTGCAAGACGTGCGGCACTAAATTTAGACAAGAAGCAGCGCTTATACGCCACCAGAAGGTCCATACGGAAAAGCCACCAAAGCCTCCAAAACCGCCAAAACTTTTAACTGAGAAAGATAGAGAAAAACAACTGCAGAAATCTGACCAACGACAAAAGGTTGAAGCCCGGCGAAAGGAAATAGCAAAAGCGGCTCAAAAACAGTTGGGGGATCTGGCAAAACAAAGGGAACTCgagaaaaatcaaaatacttaTGAACAGTATCAAGCGGCTGCGGATGAAAAACGCGCAGCTACTTGTGAATAG
Protein Sequence: MATSITCSVDSMCRTCLAYLTKGNTYNLFLVPNLAKKFTVCTSLSVEPQDGFPRNICAGCYTKLNDLYDFQRLCVEAVQQFRKMLTDKMLICAVNAVDVVEPSHNESYLQDKSDITNYDPLLNHKMELIENEEDVFKMLETVDKEAKEVEKEEEFVKHKLVFSEESAGNSSSDDYDDDDMPLAQRLCNRSTDKESELTVQTPKPNAQPHAISSTKRRLRRIIVCQICKQKFKKQIKFDEHMKHHNDLLPFQCKVETCKKGFTTAGALRLHVDYAHSQNAEEITCTVEGCKLVFPRVRLLTIHLKKVHNLQRSITPRVEQQCSECGMIFRCPVALKKHMYKHTGQELPYPCNICGKGFHINSALKNHLLRHAGIKNYVCPYCGVGKTTRQEWSKHILTHTQEKMFKCHLCEHATHSKRALDNHIKIVHEKVRNFACQYCGKTFGKSHACKIHEMTHTGEKRCECKVCGKKFLYTESLTKHLKIHEKSVDRAIETYRQRQVELCAEKPANIPNSNNNTESNPTDQLLKVCAESVATIPRDPRRVELVDIAQLAGTVVNPISLVSLPTTVASEDIKFVQKEGMHVCPGCNQGFNNLGNMKRHYKSVHEKVKDFECRFCSRRFANSQSLKQHEWIHTGEKPYACKTCGTKFRQEAALIRHQKVHTEKPPKPPKPPKLLTEKDREKQLQKSDQRQKVEARRKEIAKAAQKQLGDLAKQRELEKNQNTYEQYQAAADEKRAATCE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00339336;
90% Identity: iTF_00338587; iTF_00337762;
80% Identity: -