Cpro014379.1
Basic Information
- Insect
- Chymomyza procnemis
- Gene Symbol
- -
- Assembly
- GCA_035046065.1
- Location
- JAWNOJ010000026.1:35587893-35592325[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0017 0.12 12.9 0.9 1 23 230 252 230 252 0.96 2 23 0.0064 0.46 11.1 1.1 1 23 258 280 258 280 0.97 3 23 0.0061 0.44 11.1 0.5 2 20 312 330 311 333 0.92 4 23 0.28 20 5.9 1.1 1 23 406 429 406 429 0.89 5 23 1.5 1.1e+02 3.6 2.9 3 23 440 460 438 460 0.95 6 23 1.1 80 4.0 1.3 2 23 469 490 468 490 0.95 7 23 0.001 0.073 13.6 0.3 2 23 513 534 512 534 0.97 8 23 2.2e-06 0.00016 21.9 2.6 1 23 541 563 541 563 0.99 9 23 2.8 2e+02 2.7 2.1 3 23 604 624 602 624 0.79 10 23 0.0089 0.63 10.6 0.3 1 23 714 737 714 737 0.94 11 23 0.085 6 7.5 1.6 3 22 746 765 745 765 0.91 12 23 0.088 6.3 7.5 0.4 1 23 774 797 774 797 0.91 13 23 8.4e-05 0.006 17.0 2.2 1 23 836 858 836 858 0.96 14 23 0.00068 0.048 14.1 1.3 1 23 865 887 865 887 0.98 15 23 0.016 1.2 9.8 0.1 2 22 914 934 913 934 0.94 16 23 0.012 0.85 10.2 2.6 1 23 979 1002 979 1002 0.95 17 23 0.0026 0.19 12.3 0.7 1 23 1039 1062 1039 1062 0.95 18 23 0.0002 0.014 15.8 2.5 1 23 1096 1119 1096 1119 0.98 19 23 1.7e-05 0.0012 19.2 0.2 2 23 1143 1164 1142 1164 0.95 20 23 0.00029 0.021 15.3 3.1 1 23 1170 1192 1170 1192 0.99 21 23 1.1e-05 0.00076 19.8 2.0 1 23 1198 1220 1198 1220 0.97 22 23 1.7e-07 1.2e-05 25.5 2.4 1 23 1226 1248 1226 1248 0.99 23 23 0.00054 0.038 14.4 0.1 1 23 1254 1276 1254 1276 0.97
Sequence Information
- Coding Sequence
- atggCGCCTGAAAAATGTCGCACGTGCGCCACGCTCAACCACAATTTAGTACCACTTACAACACGTGTACAAAAACatggaaataaaagtttatacgATATTTATCGAGAGCTCACGCAAATTGATCCTCTCTTCGAGCATGCAAATGATATGccacaaaatatatgcaacaaatGTTGTGAACTTTTGAATAGTGCCTATGATTTTGTACTAATGGCTCAACAGGCACACAAACAGATGTTAGTGCAATGCCTACATGAGACACCCATAGACATTCCACAACAGGTACAAATCAAGACAGAAGTTGATGTGGACGACGAGCGTTTATTGGGTAGTCTGAACTGCGCGTTTTTGGATGTTGCAGAAGCCTTTTATACTGAAGAGAACTTAGCTGGCTGCAgcagccaaacaaacaaattatcgGACAATAGCAATGGAGAGCAAACTGTGCCAGCTGATGGTGATACTGAAGAGGAGTTTAACAGTGATTTGGAAAGCAAACCCATTAAAATACGTCGCAGTCAgcgcaaaatcaaaaagaaagaattgGATCAGTCAACAGATAGCGACGATGAAGTCGTAAGCGCAAGCAGTAATCCCATGTCTGTTAGACGTCGCCGCGGTCGTCCCTCACGTGCAGACGATAAACACAAAATGGACAAATCTGCGGTAAAACAAGAGGAACGACATGCCTGTGAGGTTTgtggaaaaacattttcctgGTTCCGAGATATGCAGCGCCATGCGCGTATACACTTTGAGGAGCCAACATTTGTTTGCGATATCTGTGGCAAGGGTTTTCTACGCAAGGATAAATACCAGTTCCACTTACGCTCGCACAAAAAACGTGATGCCAAATTGCAGGCCTTGCAGTTAAGTAACAAATGGCGCTATGCCGAACGTTTGTATAGTTCCGGCCGGCTTAAACGCATTGAGTGCAAACTTTGCGGCATGCGTTTCCAGCACTTAACAGAGCTGCGTCAGCATTTGCCAATCCATGCCAATGCCAAGACACTTGAAAGTctaaatttcgaaaatgatGTGATCAAAGTGCATTATGCTGGTGATAAGCAGTTGGATTTGTTGGAAATCGTACAACAGGTGTGCACTGATATAACCGAACAACGTCTAAGCAAATATTACTCTGTAGTTAATGCCCATGGATATGAGTTGTGCCTTAGTGACTCGGACGAAGAGTTAGCTGGTATTTGTAGTTACAACTGTGTGCCCTGCAACTTGCCATATACTCGCAAGCATAGATTAATGCGGCACACTTTGGAAGAGCATACCCAAGCTGAAACAGAACCACAGCAATGTTGCGATGTTTGTGAGATTGGTTTTGTTTGTCCCAAACTGTTTGAGCAACATAAGCGCACACactgtctaaatcagttgagACAGTTAAGTTGCGATAAGTGTCCGGGTAAATTTATGTGGCAGCAGAATCTGCAGCAGCATGCGTGTTCTCATGCCGATCCTAGCACGGAAAGTGTACCAATCGTGCCTAGAAAAAGACGCAAGGTTGAGGTCAAACTGCAGTGTGAAGAGTGTGAAAAGGTTTTTCTTTGGCAAAAGGATTTGACGCGTCATATGCGTATACATATGCCCAATATGGAGCAATATGAGTGTGCCTACTGTGATCGAAAATTCCATCGCAAAGATGGTTTAAAATCACACATGCGTGTACATAGTGAGGAGCTAAGCATGAAAATAGATGCCGCATTGCCAAAACGTGAAGCCGCCATCCTGGAACGCATGCCCGTTGTGTTAACTCAATTGTGCCGACCACATGGttgcaaacaaattcaatGTATGATCTGCCTATCCAGGCATTCAAAGATTAGCGATTTGCGCACACACTTGCGCACGCATATGAAGTGTGTTAACTTTGCCGATGAACGCAGCACGCCTGCAGCAATTGCCGCAATATCATCTTTACTGTATCCCGAACTGGAGCTACCACTAAGCAAGCAACAGTTAATCAAGCGCATTATGCAAGATGTTTCCAAAGGCGACGCTGAACTTGAGCGTTTCTATTCTATAACAAACGAAGCTGGCTGTGAGCTTGATTTGGACAGCAGCGAAACCGATACGGATTCAGATGCAGAAAATGGTGACATGTCGGCACCCGCGCGTTTTTATGCATGTGAAGTCTGTAGCCTGGTATTGCCTCGTAAGCATCAGCTTTATGCGCATCAATTGGAGCAGCATGACTGGCAGGCAGCTAGTAATGTCTGCTCGTGTTGCAACGCTAGATTTGTGAATCAAGAGCTGCTGGAACATCATCAACGCAGCTTGTGCCAAAATACAGGCAAACGTTTTCTTTGCCGAAAGTGTCCTTTGCGTTTTCGCTGGAAGGAGAATCTTAAGCTGCACGCCAGTGTAGCGCATCAAGAGTGCAAGGAGGAAGCAAGCACTGCCAAACAGGCAAGTTTCTTACGTCGCAAAATCAGCtcaaaatggcaaatttttCTAGAAGAAAACGCTAGCAAATCCCCACCCAGCTTTAATTGTGACGAGTGCAAACGcagctttaaaatgcaaaaagatcTAACACGTCATAATCTTATGCATGCCAAGGAATCGGGAATTTATAGGTGTCGTTGGTGTGCGCGCCGTTTTTATCGTCTCAACAATTTGCTGCAACATATTGAAAGGCACGGAGTGAGTGCAGCACAATTACCCTATGCCGAAGCTCTTATCAATGCCAATCGTTATCTACATGGTAGCAAGATTATTATGTGCAAAGTGTGCGAACTGCCATTCGATACAATTCACGCTTTGCGCCAGCATTTAAAAACCGCACCGGCTGGCTCGCATCATGACTATAGttctatgcaaaattattcCATTACCAATCAGCTGGGCTATGAGTTGCATATTGATGACTCGGAAACCGATGCTGAGCAGGATACAAGCGACACCAACAAATACTATACATGCGGTATGTGTTCCTTACGTTGTAAACGCAAATATGAGTTATACATGCATCAACTGGCCATGCACAGGCTGGAACGCATTAATGATGGCTGTGAGCATTGCATATTTAAGTGCGTTAGCCAGGCGCTTATTGAGCACCATAAGCGTGTGCAGTGTGGCAATACAGAGAAGCAgtttaaatgtacaaaatgtggttataaatttatgtggGAGTCGAATCTGCTGCTGCATATGGAGCTGCAGCACGATGGTAATGGAGAGTCAAACATTTTGTCGCTGGACGAATTGGATGTAATGGAGAAAAAGCCTACGCAGTTCTGCTTAAATAATGAGCAGTCGCAGATCTTTCAGTGCAATCAATGTACGCGTAAATATAATCGTAAAGATCGACTTGCTGcacacattaaaaaattccatacAGCAGATGCTAGTAATGTCAGTGTAGTTAAGAAAGAACAAACCAAACAACCAGCGGAAAAACGTTTCCTTTGCGCATTCTGTGGCAAGGCGGCAAGCTCCTCGTCCAATCTTATCATACACATGCGACGTCATACAGGTGAGAAGCCTTTTAAATGCGACTACTGTGATATGGCCTTTCCGCGCTCCTCGGATATGCAATGCCATCGTCGCACGCATACGGGTGAAAAACCACATATTTGTACAGTGTGCCAAAAGGGATTTGGACGTTCCTACAAGTTGCAGCAGCATATGCGCATACACAACGGCGAAAGACCATACAAATGTACCTATTGTGAGAAAAGCTTTACGCAATCCAATGATTTGACGCTGCATATACGTCGGCATACCGGCGAACGGCCGTATCAATGCGGCATCTGTGGTGTACGCTTTATACAGGGCACAGCATTAAAGAATCATCGCATACAGCATGGACATTTCGAGGCAAATGCTGAACCAGCGCGTCGCACCTTACTGGAACAATTTGCGGTGGAATGA
- Protein Sequence
- MAPEKCRTCATLNHNLVPLTTRVQKHGNKSLYDIYRELTQIDPLFEHANDMPQNICNKCCELLNSAYDFVLMAQQAHKQMLVQCLHETPIDIPQQVQIKTEVDVDDERLLGSLNCAFLDVAEAFYTEENLAGCSSQTNKLSDNSNGEQTVPADGDTEEEFNSDLESKPIKIRRSQRKIKKKELDQSTDSDDEVVSASSNPMSVRRRRGRPSRADDKHKMDKSAVKQEERHACEVCGKTFSWFRDMQRHARIHFEEPTFVCDICGKGFLRKDKYQFHLRSHKKRDAKLQALQLSNKWRYAERLYSSGRLKRIECKLCGMRFQHLTELRQHLPIHANAKTLESLNFENDVIKVHYAGDKQLDLLEIVQQVCTDITEQRLSKYYSVVNAHGYELCLSDSDEELAGICSYNCVPCNLPYTRKHRLMRHTLEEHTQAETEPQQCCDVCEIGFVCPKLFEQHKRTHCLNQLRQLSCDKCPGKFMWQQNLQQHACSHADPSTESVPIVPRKRRKVEVKLQCEECEKVFLWQKDLTRHMRIHMPNMEQYECAYCDRKFHRKDGLKSHMRVHSEELSMKIDAALPKREAAILERMPVVLTQLCRPHGCKQIQCMICLSRHSKISDLRTHLRTHMKCVNFADERSTPAAIAAISSLLYPELELPLSKQQLIKRIMQDVSKGDAELERFYSITNEAGCELDLDSSETDTDSDAENGDMSAPARFYACEVCSLVLPRKHQLYAHQLEQHDWQAASNVCSCCNARFVNQELLEHHQRSLCQNTGKRFLCRKCPLRFRWKENLKLHASVAHQECKEEASTAKQASFLRRKISSKWQIFLEENASKSPPSFNCDECKRSFKMQKDLTRHNLMHAKESGIYRCRWCARRFYRLNNLLQHIERHGVSAAQLPYAEALINANRYLHGSKIIMCKVCELPFDTIHALRQHLKTAPAGSHHDYSSMQNYSITNQLGYELHIDDSETDAEQDTSDTNKYYTCGMCSLRCKRKYELYMHQLAMHRLERINDGCEHCIFKCVSQALIEHHKRVQCGNTEKQFKCTKCGYKFMWESNLLLHMELQHDGNGESNILSLDELDVMEKKPTQFCLNNEQSQIFQCNQCTRKYNRKDRLAAHIKKFHTADASNVSVVKKEQTKQPAEKRFLCAFCGKAASSSSNLIIHMRRHTGEKPFKCDYCDMAFPRSSDMQCHRRTHTGEKPHICTVCQKGFGRSYKLQQHMRIHNGERPYKCTYCEKSFTQSNDLTLHIRRHTGERPYQCGICGVRFIQGTALKNHRIQHGHFEANAEPARRTLLEQFAVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336938;
- 90% Identity
- -
- 80% Identity
- -