Ccau008308.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chymomyza caudatula
Gene Symbol
-
Assembly
GCA_035041775.1
Location
JAWNKW010000141.1:2139745-2144980[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.0017 0.13 12.9 0.9 1 23 236 258 236 258 0.96
2 21 0.0064 0.5 11.0 1.1 1 23 264 286 264 286 0.97
3 21 0.021 1.6 9.4 0.3 2 20 318 336 317 339 0.92
4 21 0.016 1.3 9.8 1.0 1 23 412 435 412 435 0.94
5 21 0.41 32 5.3 1.7 1 23 474 496 474 496 0.97
6 21 0.00084 0.065 13.8 1.5 2 23 519 540 518 540 0.97
7 21 7.7e-06 0.0006 20.2 2.6 1 23 547 569 547 569 0.99
8 21 2.8 2.2e+02 2.7 2.1 3 23 610 630 608 630 0.79
9 21 0.012 0.93 10.2 0.3 1 23 720 743 720 743 0.94
10 21 0.025 1.9 9.2 0.7 1 23 780 803 780 803 0.94
11 21 8e-05 0.0062 17.0 2.2 1 23 865 887 865 887 0.96
12 21 0.00068 0.053 14.1 1.3 1 23 894 916 894 916 0.98
13 21 0.046 3.6 8.3 0.0 3 22 944 963 943 963 0.96
14 21 0.024 1.9 9.2 4.2 1 23 1008 1031 1008 1031 0.95
15 21 0.25 19 6.0 0.5 1 23 1068 1091 1068 1091 0.93
16 21 0.00039 0.03 14.9 3.4 1 23 1125 1148 1125 1148 0.98
17 21 4.8e-06 0.00037 20.9 0.2 2 23 1170 1191 1169 1191 0.95
18 21 0.00029 0.023 15.2 3.1 1 23 1197 1219 1197 1219 0.99
19 21 6.3e-06 0.00049 20.5 2.0 1 23 1225 1247 1225 1247 0.98
20 21 1.8e-07 1.4e-05 25.4 2.3 1 23 1253 1275 1253 1275 0.99
21 21 0.00054 0.042 14.4 0.1 1 23 1281 1303 1281 1303 0.97

Sequence Information

Coding Sequence
atGGCGCCTGATGAAAAATGCCGCACGTGTGCTTTGCACAGTGTCAATTTAGTGGCTCTTTCAACACGTGTtcaaaaacatgcaaataaaagtttatatgaTATTTACCGAGAGCTCACACAACTTGATCCTTGTTTGGAGCATGCAAATgatatgccacaaaaaatttgcaacaaatgcTGTGAACTTTTAAAGAGTGCTTATGATTTTGTATTGATGGCTCAACAGTCGCACAAACAGCTGCTGGTTCAGTGCTTACATGAAACACCTATAGACATTCCAGAGCAGCTGCAAATCAAAACTGAAGTTGATTTAGACGATGAGCATTTGTTAGGCAGCTTTAATGACTGCACGTACTTGGATATAATAGAAGAGGCCTTTTATAATGAACAGAAACTTGCAACAAGCAGCGGCCCTACGAACAAATTGTCCGATGATAGCCATGGTGAGCAAACTGTGCCAGCTGATGACGATACAGAGGATGAGTATAACAGTGAGTTGGATAGCAAGCCCTTGGGACTACGCCGCACTCTGCGAAAAGTCacaaagaaagaagaaatggATCAACTAGCAACAGACACTGACGATGAAGTagcGATCGCAAACAGTGGCTCTTCACCAGCAAAACGTCGACGCGGCCGACCGGCACGCACAGACAAAAAACAGAAAGCAGATAAGACCTCTTCTGTCAAGGAAGAAGAACGGCATGCCTGCGAGGTTTGTGGGAAAACCTTTTCCTGGTTTCGGGATATGCAACGTCACGCGCGCATTCATTTTGAGGAGGCCTCTTTTGTGTGCGATATATGTGGCAAAGGATTTCTGCGCAAGGATAAATACCAATTCCACTTGCGCTCTCACAAAAAGCGTGACGCCAAGATGCAGGCGCTGCAGCTTAGCAATAAATGGCGTTATGCTGAACGTTTGTACAGTTCTGGTCGGCTCAAACGCATTGAATGCAAACTATGCGGTTTGCGCTTTCAGCATTTAATAGAACTGCGTCAACATTTGCCAATCCATGCAAACATTAAAACACTGGATGAGTTAAACACAGAAAATGATGTGATTAAAGTGCATTATGCTAGTGATAAGCCCTCGGAGCTGTCGGAAATTAAGCAACAGGTGTGCACCGACATATCCGAAAACCGTCTGAGCAAATATTATGCTATCGTCAATGCTCATGGCTATGAGCTGTGCCTTAGCGATTCAGATGAAGAGGTACCTGGTACTTACAAATATAAATGCGAGCCTTGCGATTTGCCCTATACGCGCAAGCACAGACTAATTCGACACACTTTGGAAGAGCACAGCCAAGCCGAGTCAGAGCCATCTCAACGCTGTGATGTGTGCGATATAGGTTTTCTGTGTCCTAAGCTATACGAACAGCACAAGCAAACGCACTGCCTCAATGAGTTGAGACGTTTTAGCTGCGACAAGTGTCCTGGAAAATTCATGTGGCAGCAGAATCTGCAACAGCACGCTTGCTCTCATGGCGATCCTAGCACGGAAAGCACTCCAATTACTCCCAGAAAAAAACGCAAGGTAGCCGTCAAGCTGCAATGCGATGAATGCCACAAAGTTTTCCTATGGCAAAAAGATTTAACGCGTCACATGCGCATACACATGCCCAATATGGAGCAATATGAGTGCGCCTATTGTGAACGAAAATTCCATCGCAAGGATGGTCTTAAATCACACATGCGTGTTCATGGCGAAGAGTTAAGCATGAAATCGGATGCTGCCTTGCCCAAACGCGAAGCGTCTATACTGGAACGCATGCCCGTTGTGCTGACGCAACTATGTCGGCCCCATGGTTGCAAACAAATACAGTGTATGATCTGTCTATCACGCCATTCTAAAATTAGTGACTTGCGGACACATTTACGCACTCATCAGcatgttgtaaattttgccgaCGAGCGCAGTACGCCTGCTGCTATTGCCGGAATATCATCATTACTCTACCCCGAATTGGAACTGCCGTTAACCAAACAGCAGCTAATCAAGCGAATTATGCAGGATGTAGAAAAGGACGATGCTGAACTTGAGCGATTCTACTCCATAACTAATGAAGCTGGCTGTGAGCTTAGCTTGGACAGTAGCGAAACCGATACGGATTCCGATTCAGAGCTTGGCAATATGTCGGCGCCTTCGCGGCTTTATGCCTGTGATGTCTGTCGTTTGGTCTTGCCGCGTAAGCATCAGCTTTATGCGCATCAATTGGAGCTGCATGAATGGCAGGAAGCGAATAATGTATGCTCTTGCTGCAACGCAAGATTTGTGAATCAAGATATATTGGAACATCATCATCGTAGTCTTTGCCAAAATACAAGAAAACGTTTTCTTTGCCGGAAGTGTCCTTTGCGCTTTCGCTGGAAGGAGAATCTCAAGCTGCACACAAATGTAGCGCATCAGGAGTTCAAGGAGGAAGCAACCAATGCCAACCAGGCAAGTTTTTCACGTCgcaaaaacaaGCGAGACTATGAGTCTTACCAGTTTCTCCGGGAGAAATTTCGTAGCTACGTCTTCAAATATGTTTTCCCCAAGTACCAAATTTCTGCGCATGAGGAAACCGCTAAAAAATCACCGGCCAGCTTTAATTGTGAGGAGTGTAAGCGCagctttaaaatgcaaaaagatcTCACTCGGCACAATCTAATGCATGCCAAGGAATCGGGAATTTATCGTTGTCGCTGGTGTGCGCGTCGTTTCTATCGTCTTAACAATCTTCTACAGCACATTGAACGGCACGGCGTCAGTGCAACACAATTGCCCTATGCCGAGGCCCTAATCAACGCCAATCGTCATCTACACGGTAACAAGATAATTCTATGCAAGGTTTGTGAAATACCCTTTGATACAATTGCCGCATTGCGCCAGCATTTGAAAACAGCTCCGGCTGGGACACATCATGACTATAGCTCCATGCAAAACTATTCCATTACCAATCAGCTAGGCTATGAGCTGCACATTGATGACTCGGAAACGGATGAGGAGCAAAAGACAACGGATACGGCCAAGCAGTACACTTGCGGAATGTGTTCCCTGCGCTGTAAGCGCAAATATGAGCTACATATGCATCAGCTGGCAATGCACAGGCTGGAGCGCATAAGTGATGGCTGTGAGCATTGCATATTTAAGTGCGTTTCTCAGACGCTCATCGAGCATCATAAGATTGTGCAATGTGGTAATACGGAGAAACAGTTTAAGTGCATCAAATGTGGCTATAAATTTATGTGGGAGTCGAATCTATTGCTCCACATGGAACTTCAGCACGATAGCAAAGGAGAGTCTAGCATTCTGTCGCTGGAGGAATTGGATTTAATCGAAAAAACGCCCAGTCAGCGTTGCTCAAGTAACGAGCAGTCGCAGATCTTTCAATGTAACCAATGCACACGTAAATATAATCGGAAAGATCGCCTGTCTGCGCACATCAAGAAGTTTCACTCAGCATCGCCTAATGTTGTGGTCAAAAAAGAGGAGTCAAAGCAGCCGGCTGAGAAACGTTTCTTATGTGCCTTCTGTGGCAAGGCCGTGAGCTCCTCGTCAAATCTTATCATACACATGCGACGCCATACTGGCGAGAAGCCCTTTAAATGCGATTATTGCGACATGGCATTTCCGCGTTCGTCCGATATGCAATGTCATCGCCGCACACATACAGGTGAAAAACCGCATGTCTGCACGGTGTGCCAAAAGGGATTTGGACGTTCCTacaagctgcagcagcatATGCGTATACACAATGGTGAAAGACCCTACAAATGTAGCTACTGCGAGAAGAGTTTTACGCAGTCAAACGATCTGACCTTGCATATACGTCGTCATACTGGCGAAAGACCCTATCAATGCGGAATCTGTGGCGTACGCTTTATTCAGGGCACGGCCTTGAAGAACCATCGCATACAGCATGGACATTACGAGCCAAATGCAGAGCCAACGCGTCGATCATTGCTGGAAGAATTTGTAGTTGAATGA
Protein Sequence
MAPDEKCRTCALHSVNLVALSTRVQKHANKSLYDIYRELTQLDPCLEHANDMPQKICNKCCELLKSAYDFVLMAQQSHKQLLVQCLHETPIDIPEQLQIKTEVDLDDEHLLGSFNDCTYLDIIEEAFYNEQKLATSSGPTNKLSDDSHGEQTVPADDDTEDEYNSELDSKPLGLRRTLRKVTKKEEMDQLATDTDDEVAIANSGSSPAKRRRGRPARTDKKQKADKTSSVKEEERHACEVCGKTFSWFRDMQRHARIHFEEASFVCDICGKGFLRKDKYQFHLRSHKKRDAKMQALQLSNKWRYAERLYSSGRLKRIECKLCGLRFQHLIELRQHLPIHANIKTLDELNTENDVIKVHYASDKPSELSEIKQQVCTDISENRLSKYYAIVNAHGYELCLSDSDEEVPGTYKYKCEPCDLPYTRKHRLIRHTLEEHSQAESEPSQRCDVCDIGFLCPKLYEQHKQTHCLNELRRFSCDKCPGKFMWQQNLQQHACSHGDPSTESTPITPRKKRKVAVKLQCDECHKVFLWQKDLTRHMRIHMPNMEQYECAYCERKFHRKDGLKSHMRVHGEELSMKSDAALPKREASILERMPVVLTQLCRPHGCKQIQCMICLSRHSKISDLRTHLRTHQHVVNFADERSTPAAIAGISSLLYPELELPLTKQQLIKRIMQDVEKDDAELERFYSITNEAGCELSLDSSETDTDSDSELGNMSAPSRLYACDVCRLVLPRKHQLYAHQLELHEWQEANNVCSCCNARFVNQDILEHHHRSLCQNTRKRFLCRKCPLRFRWKENLKLHTNVAHQEFKEEATNANQASFSRRKNKRDYESYQFLREKFRSYVFKYVFPKYQISAHEETAKKSPASFNCEECKRSFKMQKDLTRHNLMHAKESGIYRCRWCARRFYRLNNLLQHIERHGVSATQLPYAEALINANRHLHGNKIILCKVCEIPFDTIAALRQHLKTAPAGTHHDYSSMQNYSITNQLGYELHIDDSETDEEQKTTDTAKQYTCGMCSLRCKRKYELHMHQLAMHRLERISDGCEHCIFKCVSQTLIEHHKIVQCGNTEKQFKCIKCGYKFMWESNLLLHMELQHDSKGESSILSLEELDLIEKTPSQRCSSNEQSQIFQCNQCTRKYNRKDRLSAHIKKFHSASPNVVVKKEESKQPAEKRFLCAFCGKAVSSSSNLIIHMRRHTGEKPFKCDYCDMAFPRSSDMQCHRRTHTGEKPHVCTVCQKGFGRSYKLQQHMRIHNGERPYKCSYCEKSFTQSNDLTLHIRRHTGERPYQCGICGVRFIQGTALKNHRIQHGHYEPNAEPTRRSLLEEFVVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00339319;
90% Identity
-
80% Identity
-