Cpro009319.1
Basic Information
- Insect
- Chymomyza procnemis
- Gene Symbol
- fru
- Assembly
- GCA_035046065.1
- Location
- JAWNOJ010000023.1:12098417-12100731[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-10 5.7e-07 29.2 0.0 1 44 402 445 402 446 0.91 2 2 0.17 2.5e+02 1.5 0.0 29 42 578 591 573 594 0.88
Sequence Information
- Coding Sequence
- ATGGGTGGTCCAGCaccgccagcagcagcagccagtgCACCGGCCACAGAGGGTCAAACATATTGTCTGCGCTGGAACAATCATCAGACGAATCTGGTGCAGATTTTGCATGCACTGCATGAGGTGGGCAGCTATGTGGACTGCACCATAGTGGTGGACGATGAGCAATTTAAGGCGCATCGTGTGGTGCTGGCCGCCAATTCACCGTATTTTCAAGCCATACTGCAGGATGTGCAGCAGGATCAGTGCAGCATTATACTGCCAGGTGTCAAGGGTTTTGAGattgctgcgctgctgcagtATATGTACACGGGTGAGACAACGGTGACAAAGAGTCAGGAGCCGGAAATACTGCGCACTGCCAAGGAGCTGCAGGTGAAGGGTCTCTACGATAATCTTATGAAATTCAATCACAAGTCCAATAGCGATGAGCGCGCAGAGCACGTCTTGTCGCAGCCGCTGCATCAGTTCCATGCAGGTGCAACGGCACATGTGGCCACCTCTAGCTCAGCCACCGGCTGCAAGCCCATTGGCATGCCCACACACAATGGCGGTGATGCCTACGGACAACACAATTCCTCCTCAGTGATCTCAACCTCGACAAACATATCACCCAGTGCAGCCATTTCCAGTAGCTCATCACCGCCACCGCCTTTTGGCGCCTATCAGCCACCCTATACGAATATGTATCGCAAATCGCCAGGTCCCATTAATCCACATGCAGCACCCGTCGATGCACCACTTACGCCCACACATGCTGCGGCACATACAGCTGGCGCTGAGCCTACGCAATGGCCTTTGTCACCCTCGGCCACAGCTGCCATGTTGAATTCCGTCTATGAGTCTGCAGCTGATATGAATCCGCTCAAGCGCAAGAAGCTCTCAGCCATTTCCAGCATGTTCATGAATCGCGATACGCCTATTTTGCGTAATGTGCTGGCACAGGCTAACTCTGCCGATTCCTCACAACCAAGTCCTCTACTGCTACCGGGTGTGTTCAAGGGTGAGAAGCCTGCTGCTGAGAAGACACCAACGCATCAGCATAGCAGCAGTGGCGGAGGCGGCGGTGGCAGTCATAGCTTTAATGGTTCCGACTATGGCGGAGATAAGGAACCCCTGTCACCGCACACGGATCGCTCCTTTGACGACGAAACTGGCAATCAGTCTGGCAAGAAACCCGAATGGAAACGCTATAAGCAGTATACACGCGCGGACATGATGTGCGCCATACAGTGCGTGCGTGAAGGCATGAGCGCGCTACAGGCTAGTCGCAAATTCGGACTACCCTCGCGCACGCTGTACGACAAGGTGCGCAAGCTGAACATTACCACGGGTCGTGGCACACATCGTGCGCCCAAGCGTAGTCCGCCCAGCGGCGTCGAGTCATCAGCCGCCTTTCCCTATGCAGCCGCTGCCTATGGTCAGTCAGAGCAGCTGCTCTCAGCCATGCAGGAACGTGAGGAGCGTGAGCAGGCCAAGGAAGCGCTAGCCGCTGGTCATGCGCATCGCAGCGACGCAGTGCCGCCGCATCATAATATGCCACCAACCATACCACATTCGGCGGCTGCGCTGCTAGATCATGCTTTTCTACAGCAGGCGCTGGAGAATCGTGGCGGTGATATAGCCGGACGTGAGGCTTTGCATGCCATGGcgctggcagcagcagcgcatgCTGCAGCCAATCGCATGTCCAGCAGTCCGCAGGATTCGAATGGTCATGCGGCACGCTCGCCTAGTCCAACACTGCAGCGACACTATGCCGAGCATGAGGCACGCGAGCTGGCCAAACATGAGCAGCGTTTGATTAAACGCGAGGCCTTGGAGCAGGATGAGCGTGATGCCGACGATGAGGATGATCATGTAGAAGACTTATCGCTGGCACGCAAGCAGCGTGCTATGACACCCACACCACTGCTGCTGGCACATAAACGTGCAGAGTCACCATATTCACCGCCAGCAGCGCATCCGCCACGTACTAGCTCGCCCCTGGAGACAGCTAGTGTCATAATGCCACCGCTGAGCAGTGGCAAGCACTCGACCAATGGCAACGAGCGGCATGAGCCGGACTATGCTAACGAGAGCGCAGCTAGTCCGCGGCACGCGGAGACTGCGCTTAAGCGTGAGCTGCTTAGCGAAGAAGCACGCAATGACTGA
- Protein Sequence
- MGGPAPPAAAASAPATEGQTYCLRWNNHQTNLVQILHALHEVGSYVDCTIVVDDEQFKAHRVVLAANSPYFQAILQDVQQDQCSIILPGVKGFEIAALLQYMYTGETTVTKSQEPEILRTAKELQVKGLYDNLMKFNHKSNSDERAEHVLSQPLHQFHAGATAHVATSSSATGCKPIGMPTHNGGDAYGQHNSSSVISTSTNISPSAAISSSSSPPPPFGAYQPPYTNMYRKSPGPINPHAAPVDAPLTPTHAAAHTAGAEPTQWPLSPSATAAMLNSVYESAADMNPLKRKKLSAISSMFMNRDTPILRNVLAQANSADSSQPSPLLLPGVFKGEKPAAEKTPTHQHSSSGGGGGGSHSFNGSDYGGDKEPLSPHTDRSFDDETGNQSGKKPEWKRYKQYTRADMMCAIQCVREGMSALQASRKFGLPSRTLYDKVRKLNITTGRGTHRAPKRSPPSGVESSAAFPYAAAAYGQSEQLLSAMQEREEREQAKEALAAGHAHRSDAVPPHHNMPPTIPHSAAALLDHAFLQQALENRGGDIAGREALHAMALAAAAHAAANRMSSSPQDSNGHAARSPSPTLQRHYAEHEARELAKHEQRLIKREALEQDERDADDEDDHVEDLSLARKQRAMTPTPLLLAHKRAESPYSPPAAHPPRTSSPLETASVIMPPLSSGKHSTNGNERHEPDYANESAASPRHAETALKRELLSEEARND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336655;
- 90% Identity
- iTF_00336655;
- 80% Identity
- iTF_00339247;