Ccau000686.1
Basic Information
- Insect
- Chymomyza caudatula
- Gene Symbol
- fru
- Assembly
- GCA_035041775.1
- Location
- JAWNKW010000011.1:2228006-2230527[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.5e-10 6e-07 29.2 0.0 1 44 402 445 402 446 0.91
Sequence Information
- Coding Sequence
- ATGGGTGGGCCCGTaccgccagcagcagcagctagtGCTCCGGCCACAGAGGGTCAAACATATTGTCTGCGTTGGAACAATCATCAGACGAATCTGGTGCAGATATTGCATGGATTGCATGAGGTGGGAAAGTATGTGGACTGCACCATTGTGGTGGATGATGAGGAGTTCAAAGCGCATCGTGTGGTGCTGGCAGCCAATTCGCCGTATTTTCAAGCTATACTGCAGGATGTGCAGCAGGATCAGTGCAGTATTATACTGCCGGGTGTCAAGGGCTTTGAGATTGCAGCGTTGCTGCAGTATATGTATACGGGCGAGACCACGGTCACCAAAAGTCAGGAGCCGGAAATTCTGCGTACTGCCAAGGAACTGCAAGTCAAGGGTCTGTACGACAATCTCATGAAGTTCAATCACAAGGCCACCACCGACGAGCGCGCGGACCATGTGCTACATGTGCCAACGCATCATCAGTTCCATGCCAGTGCAACGGCCCATGTGGCCACTTCTAGTTCAGGCACGGCCGCCAAGTCAGTCGGCATGCCCACACACAACGGCGGAGATGCCTATGAGCAGCACAATTCCTCCTCAGTGATCTCAACCTCGACAAACATATCACCCAGTGCAGCCATTTCCAGCAGTTCCTCACCGCCACCGCCTTTTGGTGCCTACCAGCCTCCCTATACGAACATGTATCGCAAGTCCCCGGGTCCCATTAATCCACATGCAGCGTCCGTAGAGACACCACTAACGCCCACCCATGCCACACCCCATGCAGCTGGCGGAGACCCTACCCAATGGCCACTTTCGCCTTCAGCCACTGCTGCCATGTTGAATTCCGTCTATGAGTCTGCGGCTGACATGAATCCGCTAAAACGCAAGAAGCTCTCGGCCATTTCCAGCATGTTCATGAATCGTGACACGCCCATTTTGCGCAATGTGCTAGCCCAGGCTAATTCTGCGGATTCCTCACAGACAAATCCCTTGCTGCTGCCGGGTGTATTCAAGGGTGACAAGCCTGCGGCAGAGAAGACACCAACGCATCAGCACAGCGGAAGTGGTGGAGGTGGAGGAAGTCACAGCTTTAATGGTTCCGATTATGGCGGCGATAAGgAACCGCTGTCCCCGAATACGGATCGTTCCTTTGACGACGAAACCGGAAATCAGTCTGGCAAGAAACCCGAATGGAAACGCTATAAGCAATACACGCGCGCGGACATGATGTGCGCCATTCAATGCGTACGTGAAGGCATGAGCGCGCTCCAGGCAAGTCGTAAGTTTGGCCTGCCCTCACGCACGCTGTACGACAAGGTGCGTAAGCTAAATATAACCACAGGCAGAGGCACACACCGTGCGCCCAAGCGTAGTCCACCCAGCGTTGAGTCATCTGCTGCCTTTCCCTATGCGGCCGCCGCCTATGGTCAGTCGGAGCAGCTGCTCTCAGCCATGCAGGAGCGTGAGGAACGCGAGCAAGCTAAGGAGGCGCTGGGCGGTCATGCGCACCGCAGCGACGCGGGTCCACCACATCACAACATGCCGCCCACCATACCACACTCGGCGGCGGCGCTGCTGGATCACGCATTTCTACAGCAGGCCCTGGAAAATCGTGGCGGTGATATAGCGGGACGTGAGGCTCTGCATGCCATGGCCTTGGCCGCAGCGGCGCATGCAGCTGCCAATCGCATGTCCAGCAGCCCGCCTGGATCTAACGGTCATGCGGCACGTTCGCCCAGTCCGGGGCTGCAACGTCACTATGCTGAGCATGAGGCACGCGAACTGGCCAAGCACGAGCAGCGTTTGATCAAGCGCGAGGCGCTGGAACAGGATGAGCGTGATGCCGATGACGAAGATGATCATGTGGAAGACTTGTCGCTGGCACGCAAACAACGTACTGTCACACCCACGCCACTGATGCTCGCGCACAAGCGCGCAGAGTCACCCTACTCACCGCCAGCGCCACCACCACGCGCATCCTCGCCCATGGAAACCACCAGTGTTATCATGCCCCCGCTGAGCAGTGGCAAGCACTCCACAAATGGCAATGAGCGGCATGAGCAGGAGTATGGCACGGAGGGTAGAACTAGTCCTGTTGGCGAGGAGGCTGGACTAAAGCGCGAGCTGCTAAGCGAGGAAGCACGCAATGACTGA
- Protein Sequence
- MGGPVPPAAAASAPATEGQTYCLRWNNHQTNLVQILHGLHEVGKYVDCTIVVDDEEFKAHRVVLAANSPYFQAILQDVQQDQCSIILPGVKGFEIAALLQYMYTGETTVTKSQEPEILRTAKELQVKGLYDNLMKFNHKATTDERADHVLHVPTHHQFHASATAHVATSSSGTAAKSVGMPTHNGGDAYEQHNSSSVISTSTNISPSAAISSSSSPPPPFGAYQPPYTNMYRKSPGPINPHAASVETPLTPTHATPHAAGGDPTQWPLSPSATAAMLNSVYESAADMNPLKRKKLSAISSMFMNRDTPILRNVLAQANSADSSQTNPLLLPGVFKGDKPAAEKTPTHQHSGSGGGGGSHSFNGSDYGGDKEPLSPNTDRSFDDETGNQSGKKPEWKRYKQYTRADMMCAIQCVREGMSALQASRKFGLPSRTLYDKVRKLNITTGRGTHRAPKRSPPSVESSAAFPYAAAAYGQSEQLLSAMQEREEREQAKEALGGHAHRSDAGPPHHNMPPTIPHSAAALLDHAFLQQALENRGGDIAGREALHAMALAAAAHAAANRMSSSPPGSNGHAARSPSPGLQRHYAEHEARELAKHEQRLIKREALEQDERDADDEDDHVEDLSLARKQRTVTPTPLMLAHKRAESPYSPPAPPPRASSPMETTSVIMPPLSSGKHSTNGNERHEQEYGTEGRTSPVGEEAGLKRELLSEEARND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336843; iTF_00336034; iTF_00337443; iTF_00338257; iTF_00338482; iTF_00335804; iTF_00337660; iTF_00339071; iTF_00339247;
- 90% Identity
- iTF_00336843; iTF_00336034; iTF_00337443; iTF_00338257; iTF_00338482; iTF_00335804; iTF_00337660; iTF_00339071; iTF_00339247;
- 80% Identity
- iTF_00336843;