Basic Information

Insect: Chymomyza fuscimana
Gene Symbol: ush
Assembly: GCA_949987675.1
Location: OX465088.1:20141918-20146579[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0071 0.74 10.9 0.0 1 20 222 241 222 243 0.89

2 9 0.00029 0.03 15.3 0.8 1 23 293 315 293 315 0.98

3 9 0.049 5.1 8.3 1.0 2 21 352 371 352 372 0.92

4 9 0.05 5.2 8.3 2.9 2 21 769 788 768 789 0.93

5 9 0.0093 0.97 10.6 0.0 3 21 830 848 828 849 0.91

6 9 0.061 6.3 8.0 0.0 2 23 941 962 940 962 0.97

7 9 0.0036 0.37 11.9 1.5 1 23 968 990 968 990 0.99

8 9 0.0019 0.2 12.7 0.8 1 23 1052 1075 1052 1075 0.96

9 9 0.33 35 5.7 0.6 2 20 1186 1204 1185 1206 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0071	0.74	10.9	0.0	1	20	222	241	222	243	0.89
2	9	0.00029	0.03	15.3	0.8	1	23	293	315	293	315	0.98
3	9	0.049	5.1	8.3	1.0	2	21	352	371	352	372	0.92
4	9	0.05	5.2	8.3	2.9	2	21	769	788	768	789	0.93
5	9	0.0093	0.97	10.6	0.0	3	21	830	848	828	849	0.91
6	9	0.061	6.3	8.0	0.0	2	23	941	962	940	962	0.97
7	9	0.0036	0.37	11.9	1.5	1	23	968	990	968	990	0.99
8	9	0.0019	0.2	12.7	0.8	1	23	1052	1075	1052	1075	0.96
9	9	0.33	35	5.7	0.6	2	20	1186	1204	1185	1206	0.91

Sequence Information

Coding Sequence: ATGCTGGCCACCATCACAACGACTAGCAGTGACCACCATGAGCTTTTCCGGCTTGGGAATGATTCCAAAGATTTGGGCTCACATGAGCTAAGCGGGGAGGACAAACAACTCGAGCCGCACGATGAGCACAGCCAGACGCCCACAAGCCTAAACCAAAACCCAGATTCCAACAATTCCAATGCCGAGCAGGCGCATGAGACTGAAAGTGATGTGGAAATGGCCGAACCGCCGCTGGACACTGATAAATCCCAGGAGAAGCTACCTAGCACGCCACCTACACGTCCTAGCAGCAGCGAGGCACCTAGTCCTGCTTCGACGCGCAACTGTGCTGATTTAATACCCAAACTGGAGCTTGAGCAGGCGCCTACGCCGCCATCACCTTGCGCACGCCCGGACACTACATCGCCTAGCCTTTCGCCACAGACTGAGTCGCATCCGGCCAGCGCTGCCTCCTCGCCAGCGCCCATGCTGCCCAAACTGCGTTTAAATGCCTTGTTGGCTTCGGATCCTGCACTAAAACCCAATGCAAAAGAGCTGAATCTGCACCATGATGAGCCACAGATGAAGCATCGTGCGATAGGGCCGCCGCCGCCCTTAAATAAAACCGAGCAGCTGCCGGAGAGTTTGACCACTGGTTTAGAGCCACTACTGAAACCTGCACGCTTTATGTGCATGCCATGCGGCATAGCGTTTAGCTCGCCGTCGACACTAGAGGCGCATCAGGCTTATTACTGTTCACATCGCATCAAGGAGCCGGAAGATGAGGCGAGCGATAAAAACAGCACAGGCTCAAGTGCAGCTGGAGCCGCAGCTGCTGCGGCTGGCGGCACAGCTAGCACCGAGCCAGCTGCCAAGTCCTTGCGCACGGGCAAGCAATATGCCTGCACGCAATGTTCCTATAGCGCAGATAAGAAGGTCTCCCTGAATCGTCATATGCGCATGCACCAGACCTCACCGGCTTCCAGCACGCCAAACGGAGGCGCTACAGTGATTACTGCAGCGGCAACTGCTGCCGTCGGCTACGAGGAGAGCTCTAGTCAACAAATCGATCGTTACTGCAGTGATTGTGATATACGCTTCAACAATGTGAAGACCTACCGCGCCCATAAGCAACACTATTGCAGTTCCCGACGCTCCGATGGACAGATGACGCCCAAACTGGAAAGTGTAGCCAGTGCCAGCAGCAGTGTTAATtctagcaacaaagtagctttGGTCAGTGGCGCACACAGTCCTCAGACGCGCAATAAGACACCAACACCGGCAATAGTGGCTGCGGCtgcggcagcagctgcagccgcagcagcatcTTTGCAGGCACCACCGCAACCTTTTCTGGCATTGCCCACTAATCCTATCATAATTGTGCCCTGTTCGCTTATACGCGCTGCCAGCCTCATTCCAGGACCACTCACCACCTCCACCTCGGGCATTATTAATCCAGAGTCCACTTGCTTCACGCTGGACAATGGTGCACTCAAACCATTGGCCACCGCTCTAAACATCAATGCGTTATCGAGTAATGCGGCACCTGTGCTGCCTAACAGCAATACAACTGCCATACCGGCTGCAATGGAGCAGGAACGGCAGGCAAGCAACGTGCCGGACAATGAAAAGTCTAACAGCTTGCAGCAGGAGCCTAAAGCTATAAAACGCAAAGAAAGCGGTGCTGTCCGCGAATCGGCTCCGCTGGATCTCTCACTGCGTCGCTCGCCCATTTCGGCACTGCTGCAGCGTCAGCATTTTGTGCGCTCTGCACACGCATTGATGGGCAGCGAGACTCAACAACAACGTGAAAACCTGGAAGCCTTGGCATTGCTAGAAGCTGGCAAGGAGAATCTTGCACTGGATCAGAGCGGCAGTGTTACGCCTGAGCAAATTGTATGCGCGCCATCATTGCCTAGCAGTCCCTCCATGAGTCCCTCGCCCAAACGGCGTGCCATAAGCCCGCGTAGCTCTGGCGCAGGCAGCGCCTCCTCTATGTCGCCACCTACCAGTGTAGGAATGCCACATTTTACATCAAGTTTGCTGGACAATTTGCCACTGCGCTCCATGTTGCCAGCTGATTTTGCGTTAAGCCTTTCGAATTCCGAGTCGCTGCTGGCCAAAACAAACCCGGAGTTGGCTTTAAAActagcagcagctgctgcagccgctGTGGCTGGTTCAAGCTCAGCTGAGCTGGCTGCTGCAGCTAGTAAACTGGGCTTTACGGTGCCAGCCAATGCGTCAGCAGCTCCAAGCTCAGCTGTTACTGCGCCGTCTACAAATCAACCGCAGATTTATGTCAAACAGGGTGTTTCCAAGTGCAAGGAGTgtaatattgttttttgcaaatatgaaAACTATCTGGCCCATAAGCAGCATTACTGCTCGGCGCGGAATCAGGAAACTAGCGAGGGAGATGCCAAGTTATCTAACACGCCACCCAATACAGGGCCCGTATCCACTGCAGAAACAACGCCGGTGGCGTATCAGCAGCTAATTTGTGCAGCCTGTGGCATTAAATACACATCGCTGGACAATCTCAGAGCTCATCAGAACTACTATTGCCCCAAAGGTGGCGgcgcagctgctgcagctgctaaTGCAAGTGCCGCAGGAGCAGCCAGCGCGGCGGCTGTTGCAGCAGCGGATGCAAACACTCTAACGCTGCCTAAGGAAAAGTGTAGCAAGTGCAAAACGTTACACGAGCATGGTTTGCCCTGCCCACCGCCTGCTGCTTTACCGCAGCCACAAGTCTCTCCGCTAATTATCAGCTCGGTGACCAGCGCTACGGAACGTATTGTTACCACTTCAAACACTTCGAATAATGTCAATAAATGTCCGGTCTGTGGTGTGGTTAGTCCCACGGCCGCCTTGTCTCGCAAACATATGGAAATGCATGGTACTGTCAAAGCTTTTCGTTGCACCATTTGCCAGTACAAGGGCAACACTCTACGTGGCATGCGCACGCACATACGTACACACTTTGACAAAAAGACCAATGATATCAACGAGGAGCACTACATGACATGCATTTTTGAGGAGGATGGTTTAGAGGTGCCTACTGCAGCCACACTGCAACAGGAACAGCAGCTGGAACAACAGTTGCAGGCTGCagctgccgccgccgctgctgctgcggttACGTCTGAGCAAGTGCCACAGATTTTCAACTGCGACTATTGCAGCTATGCATCTACCTATAAAGGCAATGTGCTGCGCCACATGAAACTGCTGCATCCTCATGTAGCAATCAATTCGCCGTCTATATCACCTGACTCCAGGGAGCATGAAGCTAATGTAGCTGTTGGCGATATTGCAGCTGTCAATGGAGAGGCACATTTCCACATAAAAACAGAGCCGTTGGATCATACAGCTGTCGCCATTCCAAATCTAAATCTTGTGCATGAGAATAACAACTCACCCATTGCCACGGCCAACACACAATTGCCACACATTAAAGCCGAACCTATGGACATTCCCATTGATGTGCTTCCAGCAGCAGCTGCACTGCAACCACCACCTGTAGCATCGCCACTTGGACCCAGCGCAGCTGAGGCCATGAAGAAATACTGCTCCACCTGCGATATatcatttaattatataaagaCTTTTTTGGCACACAAACAATTCTATTGTAAATCAAAGCTGCAAAGACCGGAGGCCAATGACAGTCCCAGTCCAAATCATGTGGCTGCTGCCACTGTGGGCATGCCCATACAATCACCAAACGAATTGATAATGCTGCAAAAGAACAAGGAGAATCTGCAGGAGGCGGCCATTTGA
Protein Sequence: MLATITTTSSDHHELFRLGNDSKDLGSHELSGEDKQLEPHDEHSQTPTSLNQNPDSNNSNAEQAHETESDVEMAEPPLDTDKSQEKLPSTPPTRPSSSEAPSPASTRNCADLIPKLELEQAPTPPSPCARPDTTSPSLSPQTESHPASAASSPAPMLPKLRLNALLASDPALKPNAKELNLHHDEPQMKHRAIGPPPPLNKTEQLPESLTTGLEPLLKPARFMCMPCGIAFSSPSTLEAHQAYYCSHRIKEPEDEASDKNSTGSSAAGAAAAAAGGTASTEPAAKSLRTGKQYACTQCSYSADKKVSLNRHMRMHQTSPASSTPNGGATVITAAATAAVGYEESSSQQIDRYCSDCDIRFNNVKTYRAHKQHYCSSRRSDGQMTPKLESVASASSSVNSSNKVALVSGAHSPQTRNKTPTPAIVAAAAAAAAAAAASLQAPPQPFLALPTNPIIIVPCSLIRAASLIPGPLTTSTSGIINPESTCFTLDNGALKPLATALNINALSSNAAPVLPNSNTTAIPAAMEQERQASNVPDNEKSNSLQQEPKAIKRKESGAVRESAPLDLSLRRSPISALLQRQHFVRSAHALMGSETQQQRENLEALALLEAGKENLALDQSGSVTPEQIVCAPSLPSSPSMSPSPKRRAISPRSSGAGSASSMSPPTSVGMPHFTSSLLDNLPLRSMLPADFALSLSNSESLLAKTNPELALKLAAAAAAAVAGSSSAELAAAASKLGFTVPANASAAPSSAVTAPSTNQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQETSEGDAKLSNTPPNTGPVSTAETTPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGGAAAAAANASAAGAASAAAVAAADANTLTLPKEKCSKCKTLHEHGLPCPPPAALPQPQVSPLIISSVTSATERIVTTSNTSNNVNKCPVCGVVSPTAALSRKHMEMHGTVKAFRCTICQYKGNTLRGMRTHIRTHFDKKTNDINEEHYMTCIFEEDGLEVPTAATLQQEQQLEQQLQAAAAAAAAAAVTSEQVPQIFNCDYCSYASTYKGNVLRHMKLLHPHVAINSPSISPDSREHEANVAVGDIAAVNGEAHFHIKTEPLDHTAVAIPNLNLVHENNNSPIATANTQLPHIKAEPMDIPIDVLPAAAALQPPPVASPLGPSAAEAMKKYCSTCDISFNYIKTFLAHKQFYCKSKLQRPEANDSPSPNHVAAATVGMPIQSPNELIMLQKNKENLQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00336267;
90% Identity: iTF_00336267; iTF_00339453;
80% Identity: -