Basic Information

Insect: Chymomyza amoena
Gene Symbol: ush
Assembly: GCA_037043745.1
Location: JBAMAX010002590.1:69584-76824[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0075 0.7 10.9 0.0 1 20 228 247 228 249 0.89

2 9 0.0003 0.028 15.3 0.8 1 23 299 321 299 321 0.98

3 9 0.051 4.8 8.3 1.0 2 21 358 377 358 378 0.92

4 9 0.053 4.9 8.2 2.9 2 21 776 795 775 796 0.93

5 9 0.0098 0.91 10.6 0.0 3 21 837 855 835 856 0.91

6 9 0.007 0.65 11.0 0.0 2 23 948 969 947 969 0.98

7 9 0.0038 0.35 11.9 1.5 1 23 975 997 975 997 0.99

8 9 0.002 0.18 12.7 0.8 1 23 1059 1082 1059 1082 0.96

9 9 0.35 32 5.7 0.6 2 20 1192 1210 1191 1212 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0075	0.7	10.9	0.0	1	20	228	247	228	249	0.89
2	9	0.0003	0.028	15.3	0.8	1	23	299	321	299	321	0.98
3	9	0.051	4.8	8.3	1.0	2	21	358	377	358	378	0.92
4	9	0.053	4.9	8.2	2.9	2	21	776	795	775	796	0.93
5	9	0.0098	0.91	10.6	0.0	3	21	837	855	835	856	0.91
6	9	0.007	0.65	11.0	0.0	2	23	948	969	947	969	0.98
7	9	0.0038	0.35	11.9	1.5	1	23	975	997	975	997	0.99
8	9	0.002	0.18	12.7	0.8	1	23	1059	1082	1059	1082	0.96
9	9	0.35	32	5.7	0.6	2	20	1192	1210	1191	1212	0.91

Sequence Information

Coding Sequence: ATGCCCGCACATGCCCAATCTGGTCGGAGTAGCCAACCAACCACAAAGTGCATGAAGCTGGCCAAGATGCTGCAGACatATTCCAAAGATTTGGGCTCACATGAGCTAAGCGGGGAGGACAAACAACTCGAGCCGCACGATGAGCACAGCCAGACGCCCACAAGCCTAAACCAAAACCCAGATTCCAACAATTCCAATGCCGAGCAGGCGCATGAGACTGAAAGTGATGTGGAAATGGCCGAACCGCCGCTGGACACTGATAAACCCCAGCAGAAGCTACCTAGCACGCCACCTACACGTCCTAGCAGCAGCGAGGCGCCTAGTCCTGTTTCAACGCGCAACTGTGCTGATTTAATACCCAAACTGGAGCTTGAGCAGGCGCCTTCGCCGTCGTCCCCTGGCGCACGCCCGGACACTACATCGCCTAGCCTTTCGCCACAGACTGAGTCGCATTCGGCCAGCGCTGCCTCCTCGCCAGCGCCCATGCTGCCCAAACTGCGTTTAAATGCCTTGCTGGCCTCGGATCCTGCGCTAAAACCCAATGCTAAAGAGCTGAATCTGCATCATGATGAGCCACCGATGAAGCATCGTGCAATAGGGCCACCGCCGCCCTTAAATAAAACCGAACAGCTGCCAGAGAGTCTAAGCACTAGCTTAGAGCCGCTGCTGAAACCAGCACGCTTTATGTGCATGCCCTGCGGCATAGCCTTTAGCTCGCCGTCGACACTAGAAGCGCATCAGGCTTATTACTGTTCACATCGCAACAAGGAGCCGGAGGATGAGAACAGCGATAAGAACAGCACAAGTTCAAGTGCAGCTggagctgcagctgctgcggcTGGCGGCACGGCTAGCAGCGAGCCAGCTGCCAAGTCCTTGCGCACGGGCAAGCAATATGCCTGTACGCAATGTTCCTATAGCGCGGATAAAAAGGTCTCACTGAATCGTCATATGCGCATGCACCAGACCTCACCGGCTTCCAACACGCCAAACGGAGGCGCTACAGTGATTACTGCAGCGGCAACTGCTGCCGTCGGCTACGAGGAGAGCTCTAGTCAACAAATCGATCGTTACTGCAGTGATTGTGATATACGCTTCAACAATGTGAAGACCTACCGCGCCCATAAGCAACACTATTGCAGCTCCCGACGCTCCGATGGACAGATGACGCCCAAGCTGGAAAGTGTGGCCAGTGCCAGCAGCAGCGTTAATTCGACCAACAAAGCAGCGTTGGTCAGTGGCGCTCACAGTCCACAGACACGCAATAAGACACCAACGCCGGCCATAGTGGCTGCGGCcgcggcagcagcggcagccgcagcagcatcTTTGCAGGCACCCCCGCAGCCTTTTCTAGCATTGCCCACTAATCCTATCATAATAGTGCCCTGTTCGCTTATACGCGCCGCCAGCCTCATTCCAGGACCACTCACCACCTCCACCTCGGGCATTATTAATCCGGAATCCACATGCTTTACGCTAGACAATGGTGCACTCAAACCCTTGGCCACGGCTCTAAACATCAATGCGTTATCAAGTAATGCGGCAACTGTGCTGCCTAACAGCAATACAGCTGCCATACCGGCTGCAATGGAGCAGGAACGCCAGGCAAGCAACGTGTCGGACAATGAAAAGTCTAACAGCTTGCAGCAGGAGCCTAAAGCTATAAAACGCAAAGAAGGCGGTGCTATCCGCGAATCGGCTCCGCTGGATCTCTCACTGCGTCGCTCGCCCATTTCGGCTTTGCTACAGCGTCAGCATTTTGTGCGCTCTGCTCACGCATTGATGGACAGCGagagtcaacaacaacaacgtgaaAATCTGGAAGCCTTGGCATTGTTAGAAGCTGGCAAGGAAAATCTTGCACTGGATCAGAGCGGCAGTGTTACGCCTGAGCAAATTGTATGCGCACCCTCATTGCCTAGCAGTCCCTCCATGAGTCCCTCGCCCAAACGGCGTGCCATAAGTCCGCGTAGCTCTGGCGCAGGCAGCGCCTCCTCCATGTCGCCACCAACCAGTGTGGGCATGCCACATTTTACATCAAGTTTGCTGGACAATTTGCCGCTGCGCTCCATGTTGCCGGCTGATTTTGCGCTAAGCCTTTCGAATTCCGAGTCGCTGCTGGCCAAAACAAATCCAGAGCTGGCTTTGAAActagcagcagctgctgctgccgctgtggCAGGTTCCAGCTCCGCTGAGCTGGCTGCTGCAGCTAGTAAACTGGGCTTTACGGTGCCAGCCAATGCGTCAGCAGCTCCAAGCTCAGCTGTTACTGCGCCGTCTACAAGCCAACCGCAGATTTATGTCAAACAAGGTGTTTCCAAGTGCAAGGAGTGCAATattgttttttgcaaatatgaaAACTATCTGGCGCATAAGCAGCATTACTGCTCGGCGCGGAATCATGAAGCTAGCGAGGGAGATGCTAAGTTATCTAACACGCCGCCCAACACAGGGCCCGTATCCACTGCAGAAACAACGCCTGTGGCGTATCAGCAGCTAATTTGTGCAGCCTGTGGCATTAAATACACATCGCTGGACAATCTCAGAGCGCATCAGAACTACTATTGTCCCAAAGGCGGCGgcgcagctgctgcagctgcaaatGCTAACGCCGCAGGAGCAGCCAGCGCGGCGGCTGTTGCAGCAGCGGATGCAAACACTCTAACGCTGCCTAAGGAAAAGTGCGGCAAGTGCAAGACGTTACACGAGCATGGTTTGCCCTGTCCACCGCCTGCTGCTTTACCGCAGCCACAAGTCTCACCGTTAGTAATCAGCTCGGTGACCAGCGCCACGGAACGTATCGTCACCACTCCAAATACTTCAAATAATGTCAATAAATGTCCCGTCTGTGGTGTAGTCAGTCCCACAGCCGCCTTGGCTCGCAAGCATATGGAAATGCATGGTACTGTCAAAGCTTTTCGTTGCACCATTTGCCAGTACAAGGGCAACACGCTGCGTGGCATgcgcacacacatacgcacacacttTGACAAGAAGACCAATGATATCAACGAGGAGCACTACATGACGTGCATTTTTGAGGAGGATGGCTTAGAGGTGCCTACGGCAGCCACActgcagcaggagcagcagctggAGCAACAATTGcaggctgctgctgccgccgccgccgctgctgctgctgcagctgaaCAAGTGCCACAGATTTTCAACTGCGACTATTGCAGCTATGCATCGACCTATAAAGGCAATGTGctgCGCCACATGAAACTGCTGCATCCGCATGTAGCCATCAATTCGCCGTCTATATCACCCGAGTCTAGGGAGCATGAAACTAACGTAGCAGTTGGCGATATTGCAGCTGTCAATGGAGAGGCACATTTCCACATAAAACAAGAGCCGCTGGATCATACAGCTGTCACCATTCCAAATCTAAATCTTGTGCATGAGAATAACAACTCGCCCATTGCCACGGCCAACACACAATTGCCGCACATTAAAGCCGAACCTATGGACATTCCCATTGAGGTGCTTCCAGCAGCAGCACTGCAACCACCGCCCGTAGCATCGCCACTTGGACCCAGCGCAGCTGAGGCCATGAAGAAATACTGCTCCACCTGCGATATATCATTTAATTATATCAAGACTTTTTTGGCACATAAACAATTCTATTGTAAATCAAAGCTGCAAAGACCGGAGGCCAATGACAGTCCCAGTCCAAATCATTTGACTGCTGCCACTGTGGGCATGCCCATACAATCACCAAATGAATTGATAATGCTGCAAAAGAACAAGGAGAATCTGCAGGAGGCGGCCATTTGA
Protein Sequence: MPAHAQSGRSSQPTTKCMKLAKMLQTYSKDLGSHELSGEDKQLEPHDEHSQTPTSLNQNPDSNNSNAEQAHETESDVEMAEPPLDTDKPQQKLPSTPPTRPSSSEAPSPVSTRNCADLIPKLELEQAPSPSSPGARPDTTSPSLSPQTESHSASAASSPAPMLPKLRLNALLASDPALKPNAKELNLHHDEPPMKHRAIGPPPPLNKTEQLPESLSTSLEPLLKPARFMCMPCGIAFSSPSTLEAHQAYYCSHRNKEPEDENSDKNSTSSSAAGAAAAAAGGTASSEPAAKSLRTGKQYACTQCSYSADKKVSLNRHMRMHQTSPASNTPNGGATVITAAATAAVGYEESSSQQIDRYCSDCDIRFNNVKTYRAHKQHYCSSRRSDGQMTPKLESVASASSSVNSTNKAALVSGAHSPQTRNKTPTPAIVAAAAAAAAAAAASLQAPPQPFLALPTNPIIIVPCSLIRAASLIPGPLTTSTSGIINPESTCFTLDNGALKPLATALNINALSSNAATVLPNSNTAAIPAAMEQERQASNVSDNEKSNSLQQEPKAIKRKEGGAIRESAPLDLSLRRSPISALLQRQHFVRSAHALMDSESQQQQRENLEALALLEAGKENLALDQSGSVTPEQIVCAPSLPSSPSMSPSPKRRAISPRSSGAGSASSMSPPTSVGMPHFTSSLLDNLPLRSMLPADFALSLSNSESLLAKTNPELALKLAAAAAAAVAGSSSAELAAAASKLGFTVPANASAAPSSAVTAPSTSQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNHEASEGDAKLSNTPPNTGPVSTAETTPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGGAAAAAANANAAGAASAAAVAAADANTLTLPKEKCGKCKTLHEHGLPCPPPAALPQPQVSPLVISSVTSATERIVTTPNTSNNVNKCPVCGVVSPTAALARKHMEMHGTVKAFRCTICQYKGNTLRGMRTHIRTHFDKKTNDINEEHYMTCIFEEDGLEVPTAATLQQEQQLEQQLQAAAAAAAAAAAAAEQVPQIFNCDYCSYASTYKGNVLRHMKLLHPHVAINSPSISPESREHETNVAVGDIAAVNGEAHFHIKQEPLDHTAVTIPNLNLVHENNNSPIATANTQLPHIKAEPMDIPIEVLPAAALQPPPVASPLGPSAAEAMKKYCSTCDISFNYIKTFLAHKQFYCKSKLQRPEANDSPSPNHLTAATVGMPIQSPNELIMLQKNKENLQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00339453; iTF_00337068; iTF_00338709;
90% Identity: iTF_00338709;
80% Identity: -