Basic Information

Insect: Chymomyza fuscimana
Gene Symbol: grau
Assembly: GCA_949987675.1
Location: OX465089.1:71889059-71890890[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.9e-06 0.0002 22.2 0.1 2 23 296 318 295 318 0.95

2 8 9.6e-05 0.01 16.8 1.1 2 23 325 346 324 346 0.93

3 8 0.041 4.2 8.5 0.8 1 23 354 379 354 379 0.89

4 8 0.0075 0.78 10.9 1.3 1 23 384 406 384 406 0.97

5 8 0.031 3.2 8.9 0.2 3 23 416 438 414 438 0.77

6 8 8.8e-05 0.0091 16.9 2.0 1 23 445 468 445 468 0.96

7 8 7.2e-06 0.00075 20.3 0.8 1 23 473 495 473 495 0.97

8 8 6.9e-05 0.0072 17.3 3.8 1 23 501 524 501 524 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.9e-06	0.0002	22.2	0.1	2	23	296	318	295	318	0.95
2	8	9.6e-05	0.01	16.8	1.1	2	23	325	346	324	346	0.93
3	8	0.041	4.2	8.5	0.8	1	23	354	379	354	379	0.89
4	8	0.0075	0.78	10.9	1.3	1	23	384	406	384	406	0.97
5	8	0.031	3.2	8.9	0.2	3	23	416	438	414	438	0.77
6	8	8.8e-05	0.0091	16.9	2.0	1	23	445	468	445	468	0.96
7	8	7.2e-06	0.00075	20.3	0.8	1	23	473	495	473	495	0.97
8	8	6.9e-05	0.0072	17.3	3.8	1	23	501	524	501	524	0.98

Sequence Information

Coding Sequence: ATGGATCTGCAGACCTGTCGTCTGTGTCTGCGTGGCTCCAAAAGCTTTCGTTCCATATTTGAGGAAGCAGAGGACAGATTAAACGTTGCTGAAATTCTGCGCCAACATTTTTGGTTTGAGGTTTTGCCAGACGATgaagtttcaaaaattgtatgcaatGTGTGCTGGTCTCAAGTATCAGAGTTTCATCAATTTTATGTGTCAATTCAGGAGGCGCAGTCATATTTATCATCTTCCGCATCAAAATTTAAGCAAGAGCCCGACATATTGGCCACTGCATCATGGCCAGAAGAGGTGATGTTGCCTTCAGATGTGCTCTCATTGGATAAtacaacaacacaacaaaatattaatccCTTGGATGAGCTCGAAGTGTCTGCACCTCTTCTTGAGGAGGAGGATGTCGACAACAAAGCTGACATTAAACTGGAAAGACACTCACCAGAGCTGGATCATCATGCTGACTATTCAGATGACAGCGATACTGAAGACGACCTTATGGTTACGCGCAGTGGAAGAAAAAAACGTTCACGCGAAACGTCGGTTGTAAAGCCagtaaaaaagaaaaggctACCAAAAGGCGAAAAGCCAGTGAAACTAGCAAAAATTAAAGCCCCCACAAAAAAGAGTACAGAAAAAAAGATAAAGTTCTTAAAGCAAAAGTGGCCACCGTTTTGCAAAGAGGATGAGGAGCTCATTAAACGGTATATAGTTATGGGCTGCGAACTATGCATATTCTTAGCAGACGATTTTAATGGAATTCGAGATCATTTTAAGGAAAAACATGATGGCGAACGTCCCTATATAAAATGCTGTGGGCGCAAACTTAACAAACGTTGCCTAATAGTAGAACATGCTAGACGCCATGAAAATCCCGAATACATTAAATGCAAGGATTGCGGCAAGGTCTTTGCTAATTCTAGTGTTTTACGCGCTCATTGGTTAGTCCAACACGTGCCTTTTCCTGAATGCGTATGTGATGTGTGTGGCAAACGTTTTGCACGCCGCAATCTGCTGGAAATGCACAAAGGCTCACATGTGCCAGCCGAAGAACGCACATTTGTGTGTCCAGAGTGTCCCAAACACAATGCATTTGCCACAGATTACAATTTACAAATGCATTTACAGCAGGTGCATCGAAGAGCTGCACATGTTTGCCATGCTTGTGGCAAAGAAATTAAAGACAAGGCTGTCTTTGAGAAGCATGTGCGCTTGCATTTCGAAGAAAGCGGCCCGCGTATTAAATGTCCGCGACCCAACTGTGAGAGTTGGCTTAAAGACGAGGATAACCTTAAGCAACACATGAGGCGGCATAATGATGAAGGAAAATTGTTCATATGTTCGGAATGCGGCAAAAGTTGCAAGAACTCACGTGCTCTTATTGGGCACAAACGATATTCTCACTCGAATACCACCTATACATGCGACCAATGcgggaaaacttttaaaaaggaCATTAGTCTTAAGGAGCACATGGCCCAACACACTGGCGAGCCACTGTACAAGTGCCCATTTTGTCCGCGCACCTTTAACTCGAATGCGAACATGCATtcgcataaaaagaaaatgcatcCCGTGGAATGGGATATATGGCGAAAAACGAAAACGGGCAGTTCTCAAAAAGTGTTACCGAGTGCACAGGTGGCTCTGATGTTTAGAGATGATACAGACAACACTATAGCGAATGATTATACAAATTaa
Protein Sequence: MDLQTCRLCLRGSKSFRSIFEEAEDRLNVAEILRQHFWFEVLPDDEVSKIVCNVCWSQVSEFHQFYVSIQEAQSYLSSSASKFKQEPDILATASWPEEVMLPSDVLSLDNTTTQQNINPLDELEVSAPLLEEEDVDNKADIKLERHSPELDHHADYSDDSDTEDDLMVTRSGRKKRSRETSVVKPVKKKRLPKGEKPVKLAKIKAPTKKSTEKKIKFLKQKWPPFCKEDEELIKRYIVMGCELCIFLADDFNGIRDHFKEKHDGERPYIKCCGRKLNKRCLIVEHARRHENPEYIKCKDCGKVFANSSVLRAHWLVQHVPFPECVCDVCGKRFARRNLLEMHKGSHVPAEERTFVCPECPKHNAFATDYNLQMHLQQVHRRAAHVCHACGKEIKDKAVFEKHVRLHFEESGPRIKCPRPNCESWLKDEDNLKQHMRRHNDEGKLFICSECGKSCKNSRALIGHKRYSHSNTTYTCDQCGKTFKKDISLKEHMAQHTGEPLYKCPFCPRTFNSNANMHSHKKKMHPVEWDIWRKTKTGSSQKVLPSAQVALMFRDDTDNTIANDYTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00337031;
90% Identity: iTF_00337031;
80% Identity: -