Basic Information

Insect: Chymomyza caudatula
Gene Symbol: grau_1
Assembly: GCA_035041775.1
Location: JAWNKW010000034.1:476648-478476[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.8e-06 0.00014 22.2 0.1 2 23 294 316 293 316 0.95

2 8 9.3e-05 0.0072 16.8 1.1 2 23 323 344 322 344 0.93

3 8 0.039 3.1 8.5 0.8 1 23 352 377 352 377 0.89

4 8 0.0073 0.56 10.9 1.3 1 23 382 404 382 404 0.97

5 8 0.03 2.3 8.9 0.2 3 23 414 436 412 436 0.77

6 8 8.5e-05 0.0066 16.9 2.0 1 23 443 466 443 466 0.96

7 8 7e-06 0.00054 20.4 0.8 1 23 471 493 471 493 0.97

8 8 6.7e-05 0.0052 17.3 3.8 1 23 499 522 499 522 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.8e-06	0.00014	22.2	0.1	2	23	294	316	293	316	0.95
2	8	9.3e-05	0.0072	16.8	1.1	2	23	323	344	322	344	0.93
3	8	0.039	3.1	8.5	0.8	1	23	352	377	352	377	0.89
4	8	0.0073	0.56	10.9	1.3	1	23	382	404	382	404	0.97
5	8	0.03	2.3	8.9	0.2	3	23	414	436	412	436	0.77
6	8	8.5e-05	0.0066	16.9	2.0	1	23	443	466	443	466	0.96
7	8	7e-06	0.00054	20.4	0.8	1	23	471	493	471	493	0.97
8	8	6.7e-05	0.0052	17.3	3.8	1	23	499	522	499	522	0.98

Sequence Information

Coding Sequence: atggaTCTGCAGACTTGCCGTCTGTGCTTGCGAGGCTCCAAAACCTTTCGTTCCATATTCGATGATGCGGAAGACAAAATAAACGTTGCAGAAATTCTTCGCCAACACTTTTGGTTTGAGGTTTTGCCGGACGatgaaatttccaaaattgtatgcaatGTGTGTTGGTCTCAAGTATCCGAGTTCCACCAATTTTATGTGTCAATTCAAGAGGCGCAGGCATATTTAGCATCTTCGACTTCAAAATTTAAGCAGGAGCCCGATTTATTGGGCGCTACATCTTGGCCAGAAGAGGTAATGTTGCCTTCAGATGTGCTCTCATTGGataatacaaacacacaacaaaatattaatcCCTTGGATGAGCTTGAAGTGTCAGCACACATTAATGAGGAGGATACTGACAACAAAGCTGACATTAAACTGGAAAGGGATTCGCCAGAGCTGGATCATCATGCAGACTATTCAGATGACAGTGATAATGCAGATCTTATGGTTACGCGCAGTGGCAGAAAAAAACGCACACGCGAAACTCCGGTTGTAAAGCcaataaaaaggaaaaggctACCCAAAGGTGAAAAACCAgtgaaaatagcaaaaataaaagccaccACAAAAAAGAGTACAGAAAAGAAGATCAAGTTCTTGAAACAGAAATGGCCACCTTTTTGCAAAGAGGATGAAGAGCTCATTAAACGCTATATAGTTATGGGCTGCGAGCTATGTATATTCCTGGCAGACGATTTCAATGGGATTCGCGATCATTTTAAGGAAAAACACGAAGGTGAGCGTCCCTATATAAAATGCTGTGGACGCAAACTTAACAAACGCTGCTTAATAGTCGAACATGCAAGACGTCATGAAAATCCCGAATATATTAAATGTAAAGATTGTGGCAAGGTCTTTGCCAATTCTAGTGTTCTACGCGCACATTGGTTGGTGCAACACGTGCCTTTTCCCGAATGTGTATGTGATGTGTGTGGCAAACGTTTTGCACGCCGTAATTTGCTAGAAATGCACAAGGGCTCGCATGTGCCTGCCGAAGAACGTACATTTGTATGTCCAGAGTGTCCCAAACACAATGCATTCGCCACAGATTACAATttgcaaatgcatttacaaCAAGTGCACCGTAGGGCTGCACATGTGTGCCATGCTTGTGGCAAAGAAATCAAAGACAAGGCGGTCTTTGAGAAGCATGTACGCTTGCATTTTGAAGAAAGCGGTCCGCGCATCAAATGTCCACGACCCAATTGTGAGAGTTGGCTGAAAGACGAGGACAATCTAAAGCAACACATGAGGCGGCATAATGATGAAGGaaaattgttcatttgttCGGAATGtggcaaaagttgcaaaaactCACGGGCTCTTATTGGACACAAAAGATATTCCCATTCGAATACCACCTACACATGCGACCAATGCGGCAAGACCTTCAAAAAGGACATTAGTCTTAAGGAGCACATGGCCCAACATACTGGCGAGCCACTATACAAGTGTCCATTTTGTCCGCGCACCTTTAACTCCAATGCAAACATGCATtcgcataaaaagaaaatgcatcCCGTGGAATGGGATATATGGCGTAAAACAAAAACGGGCAGTTCCCAAAAAGTGTTGCCCAGTGCACAGGTGGCTCTAATGTTTAGGGATGATGCAGACAACACGTTAGCAAATGATTATACAGCTTAA
Protein Sequence: MDLQTCRLCLRGSKTFRSIFDDAEDKINVAEILRQHFWFEVLPDDEISKIVCNVCWSQVSEFHQFYVSIQEAQAYLASSTSKFKQEPDLLGATSWPEEVMLPSDVLSLDNTNTQQNINPLDELEVSAHINEEDTDNKADIKLERDSPELDHHADYSDDSDNADLMVTRSGRKKRTRETPVVKPIKRKRLPKGEKPVKIAKIKATTKKSTEKKIKFLKQKWPPFCKEDEELIKRYIVMGCELCIFLADDFNGIRDHFKEKHEGERPYIKCCGRKLNKRCLIVEHARRHENPEYIKCKDCGKVFANSSVLRAHWLVQHVPFPECVCDVCGKRFARRNLLEMHKGSHVPAEERTFVCPECPKHNAFATDYNLQMHLQQVHRRAAHVCHACGKEIKDKAVFEKHVRLHFEESGPRIKCPRPNCESWLKDEDNLKQHMRRHNDEGKLFICSECGKSCKNSRALIGHKRYSHSNTTYTCDQCGKTFKKDISLKEHMAQHTGEPLYKCPFCPRTFNSNANMHSHKKKMHPVEWDIWRKTKTGSSQKVLPSAQVALMFRDDADNTLANDYTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00336217; iTF_00339408; iTF_00337827; iTF_00338650;
90% Identity: iTF_00337827; iTF_00338650; iTF_00336217; iTF_00339408;
80% Identity: -