Basic Information

Insect: Chymomyza fuscimana
Gene Symbol: RREB1
Assembly: GCA_949987675.1
Location: OX465090.1:31243342-31249444[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.036 3.8 8.7 0.8 1 21 237 257 237 259 0.93

2 13 0.00034 0.035 15.1 0.2 1 23 269 291 269 291 0.98

3 13 2.4e-05 0.0024 18.7 7.5 1 23 297 319 297 319 0.98

4 13 3.3 3.4e+02 2.6 0.1 1 21 526 547 526 550 0.72

5 13 0.36 38 5.5 3.2 2 19 556 573 556 579 0.95

6 13 0.024 2.5 9.3 0.2 1 23 745 767 745 767 0.97

7 13 1.2e-05 0.0013 19.6 0.7 1 23 777 799 777 799 0.99

8 13 0.00083 0.087 13.9 2.0 1 23 805 828 805 828 0.97

9 13 0.003 0.31 12.1 2.0 1 23 1150 1173 1150 1173 0.95

10 13 8.7e-05 0.009 16.9 0.3 2 23 1572 1593 1571 1593 0.97

11 13 0.15 15 6.8 6.3 1 23 1599 1622 1599 1622 0.97

12 13 0.0085 0.88 10.7 0.5 3 23 1831 1851 1829 1851 0.96

13 13 0.0013 0.14 13.2 4.8 1 23 1857 1879 1857 1879 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.036	3.8	8.7	0.8	1	21	237	257	237	259	0.93
2	13	0.00034	0.035	15.1	0.2	1	23	269	291	269	291	0.98
3	13	2.4e-05	0.0024	18.7	7.5	1	23	297	319	297	319	0.98
4	13	3.3	3.4e+02	2.6	0.1	1	21	526	547	526	550	0.72
5	13	0.36	38	5.5	3.2	2	19	556	573	556	579	0.95
6	13	0.024	2.5	9.3	0.2	1	23	745	767	745	767	0.97
7	13	1.2e-05	0.0013	19.6	0.7	1	23	777	799	777	799	0.99
8	13	0.00083	0.087	13.9	2.0	1	23	805	828	805	828	0.97
9	13	0.003	0.31	12.1	2.0	1	23	1150	1173	1150	1173	0.95
10	13	8.7e-05	0.009	16.9	0.3	2	23	1572	1593	1571	1593	0.97
11	13	0.15	15	6.8	6.3	1	23	1599	1622	1599	1622	0.97
12	13	0.0085	0.88	10.7	0.5	3	23	1831	1851	1829	1851	0.96
13	13	0.0013	0.14	13.2	4.8	1	23	1857	1879	1857	1879	0.99

Sequence Information

Coding Sequence: ATGCTTgcaacacagcaacaacaaacccaaaagacaacgaaaaacaacgcAACAACAACCAGCAGCACACACAGTGATGAGGCTCAAATGGAGCGCCAGCGTCGCGAATCCACCACCTCAGAGTCCTCTCTGGAGCATCTGGATTTGGGTCGCACACCAAAGAAGCTAAACAGCGTCAATGGCGCACCACAGCCCACATCCACGCCACACACCAACGGCAACGATTTGAGTCAACAGGCGCGCAAGCGCAAGctgcgccaacaacaacagcagcagcaacagtccACAACAACAGTCTCCGATGAGGATGAGCCCGCCGCACACAGCGATGAGTCTGCGCAACGTCCAAGACATAAGCAGCGACGCAGCAGCGCTCGTGGCGCCACTGCCAGCATTGTGATGGACTACAGCAGCGCGGATGCCAATTCCTTGCGTAAAAAGTTTCGTCTCAATCGCAGCAGCGCCGCCGGCGACTTATTTGAGTCGGGCTTTGTGGATGCCAGCGCACACAGCGGCTATTTGCTAAATGCATCGGCTACCTGCTCCTCCTTGAACAGCGGCACACAGGCAGCCGTTTTGCCTTTGGCGGCAGCCAGTTCATCGCGCGGCAGCAGTCATAGTCATAGCAGCAGTGGCTCGGGCGCCTCCTCGCCGCATGGACTGTCCAGCGCGGAATCTGGCATTGGAGCCGGCGATGAGCATATGAAGTATTTGTGTCCCATCTGTGAAGTAGTCTCTGCCACACCGCATGAGTTCACCAATCATATACGCTGTCATAATTACGCCTCGGGTGATACCGAAAATTTCACATGCCGCATTTGCTCAAAGGTGCTCTCGTCTGCCTCTTCACTGGACAGACATGTCTTGGTGCATACCGGCGAGCGGCCATTTAACTGCAAGTACTGCCATCTGACCTTTACCACAAACGGAAATATGCATCGTCATATGCGCACTCATAAGCAGCATCAGCAGTCTGGAGGACAGCCAGCTGTTGGACACTCCACGCAGCAACAGCGACGTCACTCGCATGGCCCCAAAAATGGTGGCTCCACTGTGGATACAAATGCTGGAACGGCTGCACAGCAGCGTTTAAATGGCGTTGCCGGCATTGAGAGCTATGAAAGCGATGGCAGCTGCTCCACGGATGTGTCAAGTGCCAATAGTCAAAgatatagcaacaacaacaacagccataaagcgaacaacaacaatgtaaatagcaacaacaacaacaacaatagcgcAAGCAATTTAAAGCGTCAGCAGAGCATCGACGCAGCGTCGACAGTGCCCAAGCAGCGACGCGTGAAGACCACAATCAACAACAATATAATCGACGCTGACGAGGCAGACGAAGAAAGATTGGCCCAACAAACTCCAAGCCCGGCTGACAATCGCACAGCTGATGCGGACGAAGCTGAAGCTGTTGATGAGCCGGATGCGGACTTTGTTGTTTCCAGCAGCACACCACAAAGCTCACCCTTGCATGAGGCGATTACCAGCACACCCGATGTGGCGACTTTGCTGGCTGGTGCCAATGCCTCACCAGCTGCTTCGCCGGCACTAAGCATTGAGCATAGCTGTCCGGTGTGTGGTACCACAGCCTTTGATGGTCTTGCTGGCTTGTATGCACATTTGGATGAAGAACATGCGGATACACTAGCAAAATGCCGCGACTGTGATGTGGTCTATCGTACACATCGTCAGCTGCAGTTGCATCCTTGCACACAGCGACATGCGTCGGCGGAGTTGCCACCACTGCTAGGCGCCAGCTCATCGCCACTGCATCGGCATAATGCAGATAATCATGAGCATGATGAGGAGGATGATATCAATAGTGATGACGAGGATGAGACACAGCGTCGGCAAGCTGCAGCAGTTGATGAGGCACAACATCAGCGCGAAGATTTCTTTCGTCAGCTATATCTCAAGAACAAGGCTGCCagcgccgctgctgctgttgcggcTGCAGCCGCTGCCAATGGTCCATTGTCGCCCATTTACAATGCAGCTGGCAACGAAATCAAATGTGAGCCGGACAGCAAGGCGGATCTGGCTGATATACAATCGATTTTGAACATGACCAGCTCTTCATCCACATCCAATTTCTTGCGCAATTTCGAGCACAACGTCAATACGCCCTCAAGTCAATACAGTTTGGATGGCAAGGACGATGAGGAGGCACAGGATGCTTTTACCTCGGAGTTTCGCAAAATGAAGCTACGCGGTGAGTTTCCCTGCAAACTGTGCAGCTCTGTATTTCCCAATCTGCGCGCGCTAAAGGGCCATAATCGTGTGCATTTAAGCGCCGTTGGACCAGCTGGACCCTTTCGCTGCAACATGTGTCCCTATGCTGTTTGCGATAAGGCTGCGCTAGTGCGTCATATGCGCACACACAATGGCGATCGTCCTTATGAGTGTGCCGTCTGTAACTATGCCTTTACCACCAAAGCCAATTGTGAGCGCCACTTGCGTAATCGCCATGGCAAGACCACACGTGAGGAAGTCAAGCGTTCCATTGTCTATCATCCAGCAGAAGATGCCTCCTGTGACGAGAATAATGCCAGCAATTGCAAGTCTAGCTCACGCTTGCAGCAGCAGCTTTATGGCACGGATGCAGCTGATTTGGATTTGGCTGATCTAAGCTATCGCTCGAATACGCCCACCTTGTCCGAGCAGCGTGCCACGCCTGTTTCGCAGCTTAAGAACATGCTGCTGGCGGAGGCGCCACCACCAGCGTGCAGTAATCCAAAGCAGCCGCTAAAGATACAGGTTAAAAGCTTGGACCAGCTGGTGGACAaatcgcagcagcagcagcagcaacaaacagcTCAAACGGAATCCACGCCCAGCACAGCACCCATTGATCTAAGCATGGATGTGCTTGATCTTAGCAAGAAACCCAGCTTGACGCTACCAGCAGCCGCCGCTGAGATAGCTGCTGCCttggagcagcaacaacaacagcaacagcagcaacaacaactgctgctGGCCCAGCAGCAGCTCTTTGGCGGCACCGATCCGGCCACACAGTATATGCAGCAGCTACTGCGTAATCTGATATTCCCACAGCCCACACCTTTTCCCTACTTTGGCTTTATGCCGCCTACCGCCAATTCCAACAATCTGGCCGAGACTTTAATGTCGCGCATGTTTGGCGGCGCCGGCGCCTCGGCCAATGCAAATATGAATCTATCACCACAAGCTGCAGCACCCAGCAATGCCGAGAAAGTTGCCAGCGCAGCCATGTTGCCGCAAATAAGTCCACTTATGGCAGGCAACACTGACAAATCCAATGCGCCACTGCTGCCCGCACGTTTGCCGCATTCCAGCGCTGGACTTACGTCGAGCGTACCACTGCCTGGTGGACCCGTCAAAATGGTCATCAAAAATGGCGTGCTAATGCCCAAACAAAAACAGCGACGCTATCGCACGGAGCGACCCTTTGCCTGCGAACATTGCTCAGCCAGATTTACGCTACGCTCGAACATGGAGCGTCATGTGAAGCAGCAGCATCCACAGTTCTATGCACAGCGTCAGCGCAGCGGTCATCATGTCATGCGTGGACGTGGCGCAGCTGCAGCGGCGGCTGCCATGAATAGCATCAGTCATATGCAAGCCGCCGCCGCTGGTTACCCAGGAGCGGCACAGCAGCAAAATCAAGCGCATGCAGCTGGTGCAGGCACAGCGCCCATTTCGGAGCAGGTAAAATATGCCATATTGGCACAACAGCTAAAGGCACGCAAGGATACGGATTTGCTGCAACAGGCGCTGGCGCATGGTTCCAGCAGTGTGACAGCCAATCAGCTGCTGCACTTTGGCTATGGGCATATGAATGGACATGCACACGGTCATGGACATGCACAGCACGGTGAAGCACAACACAATGGCAATAATAATGGTCACAATATTAATGCCAGTGCAATGGATGATGATGAACCCAAGTTGGTTATTGATGAGGATGATCAGGAACAAGAGCACAATCTCGATGAAGAcatagatgatgatgatgaggaagATGAAGAAGACATgcatgacgatgatgatgaacaGGAGCTGCCTGATGAACAGCAGCAGTACgacgaagatgatgatgatgatgatgatgacgttgatgtTGCCAAAGCAGCCGTTGATGaggtaacaacaaaaactgcgGCAACACTGCCAAAACCCAACGAACAGCGGCCTCCACGCACGCCATCACCCGCAGCCAAGCCCggtgccgctgccgctgctgctgccaatgAGGCAGCTAAAAAAGTAGCCGAAACCATTTTGGAGCAGGCCATCAAAGCGGGCAAAACCGAGCCGCTGGCCAAGCCCACACAAACGCCAACAGGAGCCGCTGTAGCCGCAGCCGCAGCCACAGCCACACCCACAAACGCACACACCATGAAAACAATGATTGCTCAAGCCGAATCTGTGGCCAAATCGCTTAAGGAAGTGGCTAGCTCACCATTTAAAGACGAATCTCAGGATCTGGTGCCAGTGGCTAAGCTCGTTGATAATGCCACCAGCAATCAAGTATcctttaataattattttcgaCCCGGCGATGTGGCCAATCATATGGAACAAAGCGATGAGGAGGGTCTTGTAGCCTCCGGCAGCGCCAGCGAGAGCAACAACAGCGGCACAGAAGACGTGCCCAGCAGCAGCACGGAGCCCAAGAAAAAATCCGCCTATAGTCTGGCACCCAATCGCGTTTCCTGTCCCTACTGCCAGCGCATGTTTCCCTGGTCCAGCTCGCTGCGTCGCCACATATTGACGCACACTGGACAGAAGCCCTTTAAGTGCTCTCACTGCCCACTGCTGTTTACAACCAAAAGCAATTGCGATCGCCATTTGCTGCGCAAACATGGCAATGTGGAGTCTGCCATGTCCGTTTATGTGCCTACCGAAGATGTCAGTGAGCCCATACCAGTGCCCAAGTCTGTTGAAGAAatcgagcagcagcagcgtcaacGCGAAGATGAGGAACGCAGACGCAAGGCAGCGGAGCAGCATGCGGAGCACCAAGAACGTGAGCGTCGTGCGCAGCAGGAGGCACAACGTCAGCTGGAACGCGAACGTGAGCGTGAACAACAAAAAGAGCAGCAAGAGCACCTGTTAAAGCAGCTAGCTGCGGCAGCGCATCTTAATCAAATGAATgtggctgctgcagctgcagcggctGCAGCCGTTGCGTTCAATGCCGCTGAAGCTAATGCTACCAACAACTCGGATTTGCCCTATAAGTGTCATCTATGTGAGTGCTCGTTTGCGGAACGCTTGCTGTGCCTGGAGCATATTAAGCAACATCATGCGCAGGAGTTTACGCTGCTGCTGTCCAAGGGCGCCATTGAAACGGATGTGCTGGAGCCCACAGGCACAGCAGTGCTGAGCGCAGGcgttgatgatgacgatgatgctGGACAAACGTCTAGCTCTAATAATGCGCAACGTGGTGGCAAATATCCGGACTATAGCAATCGCAAGGTCATATGCGCCTTTTGTGTGCGTCGCTTTTGGTCCACCGAGGATTTGCGTCGTCATATGCGCACACATTCCGGCGAGCGTCCATTTCAGTGTGAGATTTGCTTGAGAAAGTTTACGCTAAAGCATAGCATGCTGCGCCATATGAAGAAGCACAGCGGCAGAGCCTATAATGGCATCAATGGCACAGGCTCCGAGCATGGTGGCTCCGATTGCTCCGATGATGAGCAGTCCACGACGCCACcacctgcagcagcagcagcagcagcattgacTGCAGCCAGCAACGCGCACAACAATGGTCAGAGCAACAATGCACGCCTGGGCTTAAGACTGCCCAAGCTGCATGAGCTGCTGGATAAGGCCAATGAATGGCGTAGCAGTGAGAcgccagcagcagctgctgcggcCGCCGTGGCTGGCGGAGATTTGATTGGCAATTTGCTGGGCATCAGCGATCAGGGCATATTGAACAAGCTGCTCTCGTCCGCGGATGAGGCGGCCAAGCTGCTGGGCGTGGAGAAGTAA
Protein Sequence: MLATQQQQTQKTTKNNATTTSSTHSDEAQMERQRRESTTSESSLEHLDLGRTPKKLNSVNGAPQPTSTPHTNGNDLSQQARKRKLRQQQQQQQQSTTTVSDEDEPAAHSDESAQRPRHKQRRSSARGATASIVMDYSSADANSLRKKFRLNRSSAAGDLFESGFVDASAHSGYLLNASATCSSLNSGTQAAVLPLAAASSSRGSSHSHSSSGSGASSPHGLSSAESGIGAGDEHMKYLCPICEVVSATPHEFTNHIRCHNYASGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQQSGGQPAVGHSTQQQRRHSHGPKNGGSTVDTNAGTAAQQRLNGVAGIESYESDGSCSTDVSSANSQRYSNNNNSHKANNNNVNSNNNNNNSASNLKRQQSIDAASTVPKQRRVKTTINNNIIDADEADEERLAQQTPSPADNRTADADEAEAVDEPDADFVVSSSTPQSSPLHEAITSTPDVATLLAGANASPAASPALSIEHSCPVCGTTAFDGLAGLYAHLDEEHADTLAKCRDCDVVYRTHRQLQLHPCTQRHASAELPPLLGASSSPLHRHNADNHEHDEEDDINSDDEDETQRRQAAAVDEAQHQREDFFRQLYLKNKAASAAAAVAAAAAANGPLSPIYNAAGNEIKCEPDSKADLADIQSILNMTSSSSTSNFLRNFEHNVNTPSSQYSLDGKDDEEAQDAFTSEFRKMKLRGEFPCKLCSSVFPNLRALKGHNRVHLSAVGPAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTTREEVKRSIVYHPAEDASCDENNASNCKSSSRLQQQLYGTDAADLDLADLSYRSNTPTLSEQRATPVSQLKNMLLAEAPPPACSNPKQPLKIQVKSLDQLVDKSQQQQQQQTAQTESTPSTAPIDLSMDVLDLSKKPSLTLPAAAAEIAAALEQQQQQQQQQQQLLLAQQQLFGGTDPATQYMQQLLRNLIFPQPTPFPYFGFMPPTANSNNLAETLMSRMFGGAGASANANMNLSPQAAAPSNAEKVASAAMLPQISPLMAGNTDKSNAPLLPARLPHSSAGLTSSVPLPGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGAAAAAAAMNSISHMQAAAAGYPGAAQQQNQAHAAGAGTAPISEQVKYAILAQQLKARKDTDLLQQALAHGSSSVTANQLLHFGYGHMNGHAHGHGHAQHGEAQHNGNNNGHNINASAMDDDEPKLVIDEDDQEQEHNLDEDIDDDDEEDEEDMHDDDDEQELPDEQQQYDEDDDDDDDDVDVAKAAVDEVTTKTAATLPKPNEQRPPRTPSPAAKPGAAAAAAANEAAKKVAETILEQAIKAGKTEPLAKPTQTPTGAAVAAAAATATPTNAHTMKTMIAQAESVAKSLKEVASSPFKDESQDLVPVAKLVDNATSNQVSFNNYFRPGDVANHMEQSDEEGLVASGSASESNNSGTEDVPSSSTEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIEQQQRQREDEERRRKAAEQHAEHQERERRAQQEAQRQLEREREREQQKEQQEHLLKQLAAAAHLNQMNVAAAAAAAAAVAFNAAEANATNNSDLPYKCHLCECSFAERLLCLEHIKQHHAQEFTLLLSKGAIETDVLEPTGTAVLSAGVDDDDDAGQTSSSNNAQRGGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGRAYNGINGTGSEHGGSDCSDDEQSTTPPPAAAAAAALTAASNAHNNGQSNNARLGLRLPKLHELLDKANEWRSSETPAAAAAAAVAGGDLIGNLLGISDQGILNKLLSSADEAAKLLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00336195;
90% Identity: iTF_00336195; iTF_00337797;
80% Identity: -