Basic Information

Insect: Chymomyza costata
Gene Symbol: RREB1
Assembly: GCA_018150985.1
Location: JAECWU010000127.1:13149001-13164068[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0054 0.43 11.2 0.6 1 21 236 256 236 258 0.96

2 13 0.00031 0.025 15.1 0.2 1 23 268 290 268 290 0.98

3 13 2.2e-05 0.0017 18.7 7.5 1 23 296 318 296 318 0.98

4 13 1.3 1e+02 3.7 0.0 1 23 527 551 527 551 0.82

5 13 0.33 27 5.6 3.2 2 19 557 574 557 580 0.95

6 13 0.022 1.7 9.3 0.2 1 23 748 770 748 770 0.97

7 13 1.1e-05 0.00091 19.6 0.7 1 23 780 802 780 802 0.99

8 13 0.00077 0.061 13.9 2.0 1 23 808 831 808 831 0.97

9 13 0.0027 0.22 12.1 2.0 1 23 1155 1178 1155 1178 0.95

10 13 8e-05 0.0064 17.0 0.3 2 23 1568 1589 1567 1589 0.97

11 13 0.13 11 6.8 6.3 1 23 1595 1618 1595 1618 0.97

12 13 0.0078 0.62 10.7 0.5 3 23 1828 1848 1826 1848 0.96

13 13 0.0012 0.099 13.2 4.8 1 23 1854 1876 1854 1876 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0054	0.43	11.2	0.6	1	21	236	256	236	258	0.96
2	13	0.00031	0.025	15.1	0.2	1	23	268	290	268	290	0.98
3	13	2.2e-05	0.0017	18.7	7.5	1	23	296	318	296	318	0.98
4	13	1.3	1e+02	3.7	0.0	1	23	527	551	527	551	0.82
5	13	0.33	27	5.6	3.2	2	19	557	574	557	580	0.95
6	13	0.022	1.7	9.3	0.2	1	23	748	770	748	770	0.97
7	13	1.1e-05	0.00091	19.6	0.7	1	23	780	802	780	802	0.99
8	13	0.00077	0.061	13.9	2.0	1	23	808	831	808	831	0.97
9	13	0.0027	0.22	12.1	2.0	1	23	1155	1178	1155	1178	0.95
10	13	8e-05	0.0064	17.0	0.3	2	23	1568	1589	1567	1589	0.97
11	13	0.13	11	6.8	6.3	1	23	1595	1618	1595	1618	0.97
12	13	0.0078	0.62	10.7	0.5	3	23	1828	1848	1826	1848	0.96
13	13	0.0012	0.099	13.2	4.8	1	23	1854	1876	1854	1876	0.99

Sequence Information

Coding Sequence: ATGCTTGCAACACAGCAACAACAAACGCAAAAGACAACGAAAAACAACGCAACAACAACCAGCAGTACACACAGTGATGAGGCTCAAATGGAGCGCCAGCGTCGCGAATCCACCACCTCAGAGTCCTCGCTGGAGCATCTGGATCTGGGTCGCACACCAAAGAAGCTAAATAGCGTCAATGGCGCACCACAGCCCACATCCACGCCACACACCAACGGCAACGAGCTGAGTCAACAGGCGCGCAAGCGCAAGCTGCGCCAACAACAACAGCAGCAGCAGTCCACAACAGCAGTCTCCGATGAGGATGAGCCCGCCGCGCACAGCGATGAGTCTGCACAACGTCCAAGACATAAGCAGCGACGCAGCAGCGCTCGTGGCGCCACTGCCAGCATTGTAATGGACTACAGCAGCGCGGATGCCAATTCCTTGCGTAAAAAGTTTCGTCTCAATCGCAGCAGCGCCGGCGGCGAACTATGCGAGTCGGGCTTTGTGGATGCCAGCGCAAACAGCGGCTATTTGCTAAATGCATCGGCTACCTGCTCCTCCTTGAACAGCGGCACACAGGCAGCCGTTTTGCCTTTGGCGGCAGCCAGTTCATCGCGCGGCAGCAGTCATAGTCATAGCAGCAGTGGCTCGGGCGCCTCCTCGCCGCATGGACTGTCCAGCGCGGAATCTGGCATTGGCGCTGGCGATGAGCATATGAAGTATGTGTGTCCCATCTGTGAAGTAGTCTCTGCCACACCGCATGAGTTTACCAATCATATACGCTGTCATAACTACGCCTCGGGTGATACCGAAAATTTCACATGCCGCATTTGCTCAAAGGTGCTCTCGTCTGCATCTTCACTGGACCGACATGTCTTGGTGCATACCGGCGAGCGGCCATTTAACTGCAAGTACTGCCACCTGACCTTTACCACAAATGGAAATATGCATCGTCATATGCGCACTCATAAGCAGCATCAGCAGTCGGGAGGACAGCCAGCTGGTGGACACTCCACACAGCAGCAGCGACGTCACTCGTATGGCCCCAAAAATGGTGGCTCCACTGTGGATACAAATGCTGGAACGGCTGCGCAGCAGCGTTTAAATGGCATTGCCGGCATTGAGAGCTATGAAAGCGATGGCAGCTGCTCCACGGATATGTCAAGTGCCAATAGTCAAAGATATAGCAACAACAACAACAACAGCCATAAAGCGAACAACAACAATGTAAATAGCAACAACAACAACAATAGCGCAACCAATTTAAAGCGTCAGCAGAGCATCGACGCAGCTTCTACAGTGCCCAAGCAGCGACGCGTGAAGACCACAATCAACAACAATATAATCGACGCTGACGAGGCAGACGAAGAAAGATTGGCCCAACAAACTCCAAGCCCGGCTAACAATCGCACAGCTGATGCCGACGATGCTGAAGCTGAGGCTGTTGATGAGCCGGATGCGGACTTTGTTGTTTCCAGCAGTACACCACAAAGCTCACCCTTGCATGAGGCGATTACCAGCACACCCGATGTGGCCACTTTGCTGGCTGGTGCCAATGCCTCACCAGCTGCTTCGCTGGCACTAAGCATGGAGCACAGCTGCCCCGTATGTGGTACCACAGCATTTGATGGTCCTGCTGGCTTGTATGCACATTTGGACGAAGAACATGCAGATACACTAGCCAAATGCCGCGATTGTGATGTAGTCTATCGCACACATCGTCAGCTGCAGTTACATCCCTGCACACAGCGACATGCCTCGGCGGAGGCATTGCCACCACTGCTAGGCGCCAGCTCATCACCACTGCATCGGCATAATGCCGATAATCATGAGCATGATGAGGAGGATGACATCAATAGTGATGATGACGAGGATGAGACACAGCGTCGTCAAGCTGCAGCAGTTGATGAGGCACAACATCAGCGCGAAGATTTCTTTCGTCAGCTATATCTCAAAAACAAGGCTGCCAGCGCCGCTGCTGCTGTTGCGGCTGCAGCCGCTGCCAATGGTCCATTATCGCCCATTTATAATGCCGCGGGCAACGAGATCAAATGTGAGCCGGACAGCAAGGCGGATCTGGCCGATATACAATCCATTTTGAACATGACCAGCTCTTCATCCACATCCAATTTCTTGCGCAATTTCGAGCACAATGTCAATACGCCCTCAAGTCAGTACAGTTTGGATGGCAAGGACGATGAGGAGGCACAGGATGCTTTTACCTCAGAGTTTCGCAAAATGAAGCTACGCGGTGAGTTTCCCTGCAAACTGTGCAGCTCTGTGTTTCCCAATTTGCGCGCGCTCAAGGGTCATAATCGTGTGCATCTAAGCGCCGTTGGACCAGCTGGACCCTTTCGCTGCAACATGTGTCCCTATGCTGTTTGCGATAAGGCTGCGCTAGTGCGTCATATGCGCACACACAATGGCGATCGTCCTTATGAGTGTGCCGTCTGTAATTATGCCTTTACTACCAAGGCCAATTGTGAGCGCCACTTGCGTAATCGTCATGGCAAGACCACACGTGAGGAAGTCAAGCGTTCGATTGTCTATCATCCAGCAGAAGATGCCTCCTGTGATGAGAATAATGCCAGCAATTGCAAGTCTAGCTCACGCTTGCAGCAGCAGCTTTATGGCACGGATACAGCTGATTTGGATTTGGCTGAACTAAGCTATCGCTCGAATACGCCCACCTTGTCCGAGCAGCGTGCCACGCCTGTTTCGCAGCTTAAGAACATGCTGCTTGCGGAGGCGCCACCACCACAAGCGTGCAGCAATCCAAAGCAGCCGCTAAAGATACAGGTTAAAAGCTTGGATCAGCTGGTGGACAAATCGCAGCAGCAGCAGCAGCAACAACCCGCTCAGACGGAATCCAACACGCCCAGCACAGCTCCCATTGATCTAAGCATGGATGTGCTGGATCTTAGCAAGAAACCCAGCATGACGCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTGGCGGCACCGATCCGGCTACACAGTATATGCAGCAGATACTGCGTAATCTAATATTCCAACAGCCCACGCCTTTTCCCTACTTTGGCTTTATGCCGCCTGCCGCCAATTCCAACAATCTGGCCGAGACTTTAATGTCGCGCATGTTTGGCGGTGCCGGCGCCACGGCCAATGCAAATATGAATCTATCAGCTCAAGCTGCAGCACCCAGTAATGCCGAGAAAGTTAACAGCGCAGCCATGTTGCCGCAAATAAGTCCACTAATGGCAGGCAACACTGACAAATCCAGTGCGCCACTGCTGCCCGCACGTTTGCCGCATGCCAGCGCTGGACTTACGTCAAGCGTACCACTGCCTGGAGGACCCGTCAAAATGGTCATCAAAAATGGCGTGCTAATGCCCAAACAAAAACAGCGACGCTATCGCACGGAGCGACCCTTTGCCTGCGAACATTGCTCAGCCAGATTTACGCTACGCTCGAATATGGAGCGTCATGTAAAGCAACAGCATCCACAATTCTATGCACAACGTCAGCGCAGCGGTCATCATGTCATGCGTGGACGTGGCGCAGCTGCAGCGGCGGCTGCCATGAACAGCATCAGTCACATGCAAGCCGCAGCCGCTGGTTATCCGGGAGCGGCACAGCAGCAAAGTCAAGCGCATGCAGCTGGTGCAGGCACAGCGCCCATTTCGGAGCAGGTCAAATATGCCATATTGGCACAACAGCTGAAGGCACGCAAGGATACGGATTTGCTGCAGCAGGCGCTGGCGCATGGTTCCAGCAGTGTGACAGCCAATCAGCTGCTGCACTTTGGCTATGGGCATATGAATGGACATGCACACGGTCATGGACATGCACAGCACGGTGAAGCACAGCACAATGGCAATAATAATGCTCACAATATTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTGCCAAAGCAGCCGTTGAAGAGGTCACAACAAAAACTGCGGCAACACTGCCAAAACCCAACGAACAGCTGCCTCCACGCACGCCATCACCCGCAGCCAAACCGGCTGCCGCTGCCACTGAGGCAGCTAAAAAAGTAGCCGAAACCATTTTGGAGCAGGCCATCAAAGCGGGCAAAACCGAGCCGCTGGGCAAGCCCATACAAGCGCCAACAGTAGCCGCTGTAGTCACAGCCACAGCCACACCCACAAACGCACACACCATGAAAACAATGATTGCTCAAGCCGAATCTGTGGCCAAATCGCTCAAGGAAGTGGCTAGCTCACCATTTAAAGACGAATCTCAGGATCTGGTGCCAGTGGCTAAGCTCGTTGATAATGCCACCAGCAATCAAGTATCCTTTAATAATTATTTTCGACCCGGCGATGTGGCCAATCATATGGAACAAAGCGATGAGGAGGGTCTTGTAGCCTCGGGCAGCGCCAGCGAGAGCAATAACAGCGGCACCGAAGACGTGCCCAGCAGCAGCACAGAGCCTAAGAAAAAATCCGCCTATAGTCTGGCACCCAATCGTGTTTCCTGTCCCTACTGCCAGCGCATGTTTCCCTGGTCCAGCTCACTGCGTCGCCACATATTAACGCATACAGGACAGAAGCCTTTTAAGTGCTCACACTGCCCATTGCTGTTTACTACCAAAAGCAATTGCGATCGCCATTTGCTGCGCAAACATGGCAATGTGGAGTCTGCCATGTCCGTCTATGTGCCTACCGAAGATGTCAGTGAGCCCATACCAGTGCCCAAGTCTGTGGAAGAAATCGAGCAGCAGCAGCGCCAACGCGAGGATGAGGAACGCAGACGCAAGGCGGCGGAGCAGCATGCGGAGCAGCTAGAACGTGAGCGTCGTGCGCAGCAGGAGGCACAGCGTCAGCTGGAACGTGAACGTGAGCGTGAACAGCAAAAGGAGCAGCAAGAGCATCTGCTAAAGCAGCTGAAAGCGGTAGCGCATCTTAATCAAATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACAACTCGGATTTGCCCTATAAGTGTCATCTATGTGAGTGCTCCTTTGCGGAACGTTTGCTGTGCCTGGAGCATATTAAGCAACATCATGCGCAGGAGTTTACGCTGCTGCTGTCCAAAGGCGCCATTGAAACGGATGCGCTGGAGCCCACAGGCACAGCAGTGCTGAGCGCAGGCGTTGATGATGACGATGAGGCTGGACAAACGTCTAGCACTAATAATGCACAACGTGGTGGCAAATATCCGGACTATAGCAATCGCAAGGTCATTTGCGCCTTTTGTGTGCGTCGCTTTTGGTCCACCGAGGATTTGCGTCGTCATATGCGCACACATTCCGGCGAGCGTCCATTTCAGTGTGAGATTTGCTTAAGAAAGTTTACGCTGAAGCATAGCATGCTGCGCCATATGAAAAAGCACAGCGGCAGAGCCTATAATGGCATCAATGGCACAGGCTCGGAACATGGTGGCTCCGATTGCTCCGATGATGAGCAGTCCACGACGCCACCACCTGCAGCAGCAGCAGCCAGCAACACGCCCAACAATGGTCAGAGCAACAATGCACGCCTGGGCCTACGACTGCCCAAGCTACATGAGCTGCTGGATAAGGCCAATGAATGGCGCAGCAGTGAGACGCCCGCAACAGCTGCAGCAGCCGCTGGCGGAGATTTGATTGGCAATTTGCTGGGCATAAGCGATCAGGGCATATTGAACAAGCTGCTCTCGTCCGCGGATGAGGCGGCCAAGCTGCTGGGCGTGGAGAAGTAA
Protein Sequence: MLATQQQQTQKTTKNNATTTSSTHSDEAQMERQRRESTTSESSLEHLDLGRTPKKLNSVNGAPQPTSTPHTNGNELSQQARKRKLRQQQQQQQSTTAVSDEDEPAAHSDESAQRPRHKQRRSSARGATASIVMDYSSADANSLRKKFRLNRSSAGGELCESGFVDASANSGYLLNASATCSSLNSGTQAAVLPLAAASSSRGSSHSHSSSGSGASSPHGLSSAESGIGAGDEHMKYVCPICEVVSATPHEFTNHIRCHNYASGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQQSGGQPAGGHSTQQQRRHSYGPKNGGSTVDTNAGTAAQQRLNGIAGIESYESDGSCSTDMSSANSQRYSNNNNNSHKANNNNVNSNNNNNSATNLKRQQSIDAASTVPKQRRVKTTINNNIIDADEADEERLAQQTPSPANNRTADADDAEAEAVDEPDADFVVSSSTPQSSPLHEAITSTPDVATLLAGANASPAASLALSMEHSCPVCGTTAFDGPAGLYAHLDEEHADTLAKCRDCDVVYRTHRQLQLHPCTQRHASAEALPPLLGASSSPLHRHNADNHEHDEEDDINSDDDEDETQRRQAAAVDEAQHQREDFFRQLYLKNKAASAAAAVAAAAAANGPLSPIYNAAGNEIKCEPDSKADLADIQSILNMTSSSSTSNFLRNFEHNVNTPSSQYSLDGKDDEEAQDAFTSEFRKMKLRGEFPCKLCSSVFPNLRALKGHNRVHLSAVGPAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTTREEVKRSIVYHPAEDASCDENNASNCKSSSRLQQQLYGTDTADLDLAELSYRSNTPTLSEQRATPVSQLKNMLLAEAPPPQACSNPKQPLKIQVKSLDQLVDKSQQQQQQQPAQTESNTPSTAPIDLSMDVLDLSKKPSMTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGGTDPATQYMQQILRNLIFQQPTPFPYFGFMPPAANSNNLAETLMSRMFGGAGATANANMNLSAQAAAPSNAEKVNSAAMLPQISPLMAGNTDKSSAPLLPARLPHASAGLTSSVPLPGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGAAAAAAAMNSISHMQAAAAGYPGAAQQQSQAHAAGAGTAPISEQVKYAILAQQLKARKDTDLLQQALAHGSSSVTANQLLHFGYGHMNGHAHGHGHAQHGEAQHNGNNNAHNINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAKAAVEEVTTKTAATLPKPNEQLPPRTPSPAAKPAAAATEAAKKVAETILEQAIKAGKTEPLGKPIQAPTVAAVVTATATPTNAHTMKTMIAQAESVAKSLKEVASSPFKDESQDLVPVAKLVDNATSNQVSFNNYFRPGDVANHMEQSDEEGLVASGSASESNNSGTEDVPSSSTEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIEQQQRQREDEERRRKAAEQHAEQLERERRAQQEAQRQLEREREREQQKEQQEHLLKQLKAVAHLNQMXXXXXXXXXXXXXXXXXXXXXXXNNSDLPYKCHLCECSFAERLLCLEHIKQHHAQEFTLLLSKGAIETDALEPTGTAVLSAGVDDDDEAGQTSSTNNAQRGGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGRAYNGINGTGSEHGGSDCSDDEQSTTPPPAAAAASNTPNNGQSNNARLGLRLPKLHELLDKANEWRSSETPATAAAAAGGDLIGNLLGISDQGILNKLLSSADEAAKLLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00336195;
90% Identity: iTF_00338635;
80% Identity: -