Basic Information

Insect: Chymomyza fuscimana
Gene Symbol: -
Assembly: GCA_949987675.1
Location: OX465089.1:100395127-100400252[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0023 0.24 12.4 0.4 1 23 163 185 163 185 0.97

2 14 3.6 3.8e+02 2.4 3.8 1 23 191 214 191 214 0.95

3 14 0.001 0.11 13.6 2.6 1 23 431 453 431 453 0.98

4 14 0.032 3.3 8.9 1.0 1 23 506 529 506 529 0.97

5 14 0.01 1.1 10.4 2.4 5 23 793 811 790 811 0.91

6 14 0.01 1.1 10.4 0.7 1 23 817 840 817 840 0.96

7 14 2.9 3e+02 2.7 0.2 2 20 880 899 880 901 0.94

8 14 0.0028 0.29 12.2 0.4 1 23 920 943 920 943 0.97

9 14 0.016 1.7 9.8 1.8 1 23 1140 1163 1140 1163 0.96

10 14 8.1e-05 0.0084 17.0 2.3 1 23 1178 1200 1178 1200 0.99

11 14 2e-05 0.0021 18.9 0.4 1 23 1205 1227 1205 1227 0.98

12 14 0.00018 0.019 16.0 5.6 1 23 1233 1258 1233 1258 0.97

13 14 0.00032 0.033 15.2 0.5 1 23 1263 1287 1263 1287 0.96

14 14 0.00074 0.077 14.0 0.8 1 23 1293 1316 1293 1316 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0023	0.24	12.4	0.4	1	23	163	185	163	185	0.97
2	14	3.6	3.8e+02	2.4	3.8	1	23	191	214	191	214	0.95
3	14	0.001	0.11	13.6	2.6	1	23	431	453	431	453	0.98
4	14	0.032	3.3	8.9	1.0	1	23	506	529	506	529	0.97
5	14	0.01	1.1	10.4	2.4	5	23	793	811	790	811	0.91
6	14	0.01	1.1	10.4	0.7	1	23	817	840	817	840	0.96
7	14	2.9	3e+02	2.7	0.2	2	20	880	899	880	901	0.94
8	14	0.0028	0.29	12.2	0.4	1	23	920	943	920	943	0.97
9	14	0.016	1.7	9.8	1.8	1	23	1140	1163	1140	1163	0.96
10	14	8.1e-05	0.0084	17.0	2.3	1	23	1178	1200	1178	1200	0.99
11	14	2e-05	0.0021	18.9	0.4	1	23	1205	1227	1205	1227	0.98
12	14	0.00018	0.019	16.0	5.6	1	23	1233	1258	1233	1258	0.97
13	14	0.00032	0.033	15.2	0.5	1	23	1263	1287	1263	1287	0.96
14	14	0.00074	0.077	14.0	0.8	1	23	1293	1316	1293	1316	0.97

Sequence Information

Coding Sequence: atgccaCTGAGAAAGATAAAAGCCAGTGGCGAAATTGACTATAAATTAGCGTGTCGCTGTTGCCTCAAATCCGACGCGGAGTTTTACAAACTAGATTCTGTAATGGTGGCGCGCAATATTGGCTACGATGAAAGTAATGCGTTCGGCAGTGATGGTAGTGAAAAGATACCATTATTGCGTTGTTTGCTCTTTTGCATTCGTACCGAAAACGTTCCGGAGCTGCCGCAGTACATTTGTCTTGGGTGCAGCAAGAGTTTGCAAATAGCATATCATTTTCTACAAAATGCACTGCGTGCACATGAGATTCTATGCAATAAACTATGCCCTGATAAATCTAAAGGGCAGCGTGCCGTGCGTTTAAATGGCCAGCAAAATCACATCATTGGGAACAACAGCAGCGAAAAGGAGCGCACTctgcagaagcagcagcagcttgagGACTGCGGCAATGATGAGGGCGCATCAAAGCCGCGAAAAACCGTGCGTCACGAATGTAAAGTATGCGGCGCTGTTATATATAATCGGTTGGAGCTTAAGCAGCATATTCGTCTGCATTCAGaCGTTGTTGCGCATAGCTGCACTATGTGTAGTTTTGTCACATTAAAACAGTACCAATTAATTCAGCACTACAAATCTTTTCACAACTTAACTGCAGCGCAATGTGAACGAAAACTAAAATCGTCTATTATATCTACATCATCAACTGGTTCGACACAACCAACGCCGTCAAAAAATGGAAAATCCGAACAACCAGCAATCAGATCAGCTAATAGCAGCATTGGCGAGGAAAATTCGGTGGTGTGTACATTAGAAGATATGGAGATGCTAATACCAACAGTGTTGAGACCCGAAGACTATGAAACACCGCACATTGATGCAGAACATTTGCAAGAATTGGAAAAACAGTTGACAGAAAGCATAGAAACAGTCGGAGCCACTGCAACAGTTCTTGATGAAAGTCTTGCGACATTAGAACTGCCTCGAAGTATCAACAATACAACTACGTCTAGCAATGCCCAAAACATTTGTGAAGGTAGCAGCAATTTGACTATAGGCACAGAGTTTTTAGTAATGCCTGATGGCTCGCTGCAACAGATAAACGGCAATGGTGTGGTCATAGAGTACATAAATGCCACGGATGGTGACGTCAAAAACAATAGAGATGAGGATTTGATTACAGCAGCAGACAACAGCGTTGTACCAATGGATATTGATGTTAATGAGCTCATTGTTGAAGAAGTGCAGCCAAATTCAAAAAGGACGAGAGGTACACCTCGCGCGACCGTAAGATACAAATGCCAACAGTGTCCCAAAACCTTTGCAACAGCGGCGCGTCTCAAATGCCATCAGTTAACCCACAGCAATTTGCCCAAATTTTATTGTGATCAATGCGCCTTCTACTCGCTGCGCAGCTCGGAGCTGATGCAACACCATAAGGAAATGCACAACATTGACTCCACAAGCGTGCTAAACGATGGTCAAAATACTTCTGTACCAACAGATGAGAGTAAAATCTACTCATGCGATATGTGCCTCTTTGAGACCAAAAGCCCTGGCCAGTTGCGTTTGCATTATAACAAAAAGCATAGGACTACAGCATCAGATGTGGAGCTGCGGCCGAGCGTAGATAATTCCAGTACCGCTGGCACTTCAACACAGACAGATGCAAACAGTGGCAAGCAGCAACAAGTACCAGAAATTCCGCTCGGAATTCAATATCCACGGCCGACAAACGCAGCAGCTAACATGGCAAGCTCAGAGCAATTGGTCGCTGCTGTAGCTACAAGTATGGAGAATGCTGTGCAGTTCACAACGGACTCGACACTTCTTTATAATTCCAGCTCGAGCGCGCAAGCAGACGTTGCAAACGTGCCACCTGTTTTGATCTCAGCTGCAACTAACCCATCCACAATTTTGCCGGTTGTTGACagcgaaaacaatttttcaatatttccacAAATCTCAGCCAACATGGCAAGCAGCGCAGAACAAATAGTAACGCTGCCAACAACGACAGGCAATGTTGCTGTTTCCATAATAGGCGATATGCAGGATTTCATAGATGACACTGATGTGGCAGCCATATGCACTATACCTGCAGATGGTCTGCCTGTAGTCGATGGCGATGATATTGTCattgacaacaacaatattaacTTGGACTTTGATGCTGAAAATCTCTTTGAAGACTTTGAGGACGACGAGGAGGATGGTGAGGCCGaggaggaagaagaagaagacgatGCAGATAATGATGATGAGAATGATAACAATGATGCAGCCATTGATCAAAACTTGTTATTAACTAGTGACGATGACGACGTCGATGATTTTGATGATGAACAATCTCGACATTTACAAAAGCCCTATTGCATCTTTTGTAATAAAAAGTTTACCAGTCAGTACAAGTTTGAGAATCACATGTTCTTGCATCGTGGCTTGGCTCCGTATCGTTGCGAGCTCTGCAccaatatttataacaaaaaacgaGCTCTTATACGGCATTACAAAGCCGTGCACAAGCGCATGCCCACGCGTGATATGGTACAGGCTAAAGGTGACAAAATATCTCTAAATCGCACGAATATTGAAAAGTTGCACATGGACAAAGCAAAAGCGCCCGTCTTAATGTGTGCCAAATGTCCCTTCGAGTGTGAACTGGAAACTGATATGCCCAAACATTTAAATGCTCATCATGGAATTAATGATGGTGTTACTTGTCATGCCAAAGAGGTTTTCATTATACGCAAACTGCCTTTTGAGTGCCCCCGTTGCATACGCTCATTTGCTGCAAAAGGTACGCTTACACGACATTTACAGCGCAGTCATCTAGTGGACACAATAATCGAGCTACAATCTCCTCCAATGACCACAAGCTCCGCCACTACAAGTTCCGCGACCACAACCACCACTTCTACACCGACTACAGCTTTACCAAATGCTAATGAAATTGCGTCAAACAAGGCGATGCCTGAGCAGCTTGTGGCAGGCGAATGCGCAAGAACAGGCGTTTTGGCAAAGCCGCCACAAAGATATCAATATAAATTTCATGACACAACTGAGACGACCACGATGACGACAAGCGCTGAGTTAACAACTAGTCTGCACATTAGTACTAACAGCAATGAACCCACAATGACGCCATTGCCTACAAATACAGCATCCACGCTTTTTCCTTCACCCACATTCCATTCATTTGATTTTGATTACTATGATTTAATGGATGAGACGCATGCCGCTGTTCAGCACCTTGTTAAGCGCGAACCAGAGGACCACAACAGCTATACGGACGCATTGACCAAATCCACCAACTACAGTCATGTGCTGCGAGATGATAAATTGCTGCCCACGGCACTGTTATGTCAGGACACTTCGCCGGTTAAGGATTTGCGCAGTTATTTGCCGCGTACGCCCATCTTTGTGTGCCGGCAATGCAATTACACCTGTGATGAACTGAGCAAACTGAACCAGCACCAAGCCATGGAACATGCCAATAATGGTGATACCACACTGCCGCGTCGTAACTATGACTACAAGTGCAGTATCTGTAATAGCACATACCGAACGATTTCACTGCTCCAATACCATATGAAGCGTCATGCCAAGCGCAATTACAAATGTGACTTGTGCCCCAAAACGTTTGTTGTGCGTCCAGAGTTGACTAAACATAGGGTAACACATAGCAAAGAGACGCCTTTTAAATGCAACGTTGAGGGCTGTCAAAAGGCCTTCAACTATAAGCATCATCTCAAGCGTCATTACATGTCCACGCACCTGCGCAAGCGTTATACATGTACTATGCCAGAATGCGGCAAAGAATTGGCATCCAGTTCGCAGCTGGCGCAACACATGCATTTTCACAAGGGCACGCATGCGTACAAATGCCCCAGGTGCACCCGTGCTTATACACGACGCAAGCCTTTACGCTTGCACGCAATGCGTGAGCATCAGTTACAGCTTAGCGAGGATGATCTGGCGGACATATATCGTGCCAATGTGGGCTACACAAATCCACACGACTTAAGAGTATTCACAGGAAATGGCGAATTATTGCGGCGTTCCGCAGTTGAAGCTGCTGCAGCAAATAAACAGCGCGCTGAATTAGAGGAAGCCGTTGTAAATATTAGTATTTAG
Protein Sequence: MPLRKIKASGEIDYKLACRCCLKSDAEFYKLDSVMVARNIGYDESNAFGSDGSEKIPLLRCLLFCIRTENVPELPQYICLGCSKSLQIAYHFLQNALRAHEILCNKLCPDKSKGQRAVRLNGQQNHIIGNNSSEKERTLQKQQQLEDCGNDEGASKPRKTVRHECKVCGAVIYNRLELKQHIRLHSDVVAHSCTMCSFVTLKQYQLIQHYKSFHNLTAAQCERKLKSSIISTSSTGSTQPTPSKNGKSEQPAIRSANSSIGEENSVVCTLEDMEMLIPTVLRPEDYETPHIDAEHLQELEKQLTESIETVGATATVLDESLATLELPRSINNTTTSSNAQNICEGSSNLTIGTEFLVMPDGSLQQINGNGVVIEYINATDGDVKNNRDEDLITAADNSVVPMDIDVNELIVEEVQPNSKRTRGTPRATVRYKCQQCPKTFATAARLKCHQLTHSNLPKFYCDQCAFYSLRSSELMQHHKEMHNIDSTSVLNDGQNTSVPTDESKIYSCDMCLFETKSPGQLRLHYNKKHRTTASDVELRPSVDNSSTAGTSTQTDANSGKQQQVPEIPLGIQYPRPTNAAANMASSEQLVAAVATSMENAVQFTTDSTLLYNSSSSAQADVANVPPVLISAATNPSTILPVVDSENNFSIFPQISANMASSAEQIVTLPTTTGNVAVSIIGDMQDFIDDTDVAAICTIPADGLPVVDGDDIVIDNNNINLDFDAENLFEDFEDDEEDGEAEEEEEEDDADNDDENDNNDAAIDQNLLLTSDDDDVDDFDDEQSRHLQKPYCIFCNKKFTSQYKFENHMFLHRGLAPYRCELCTNIYNKKRALIRHYKAVHKRMPTRDMVQAKGDKISLNRTNIEKLHMDKAKAPVLMCAKCPFECELETDMPKHLNAHHGINDGVTCHAKEVFIIRKLPFECPRCIRSFAAKGTLTRHLQRSHLVDTIIELQSPPMTTSSATTSSATTTTTSTPTTALPNANEIASNKAMPEQLVAGECARTGVLAKPPQRYQYKFHDTTETTTMTTSAELTTSLHISTNSNEPTMTPLPTNTASTLFPSPTFHSFDFDYYDLMDETHAAVQHLVKREPEDHNSYTDALTKSTNYSHVLRDDKLLPTALLCQDTSPVKDLRSYLPRTPIFVCRQCNYTCDELSKLNQHQAMEHANNGDTTLPRRNYDYKCSICNSTYRTISLLQYHMKRHAKRNYKCDLCPKTFVVRPELTKHRVTHSKETPFKCNVEGCQKAFNYKHHLKRHYMSTHLRKRYTCTMPECGKELASSSQLAQHMHFHKGTHAYKCPRCTRAYTRRKPLRLHAMREHQLQLSEDDLADIYRANVGYTNPHDLRVFTGNGELLRRSAVEAAAANKQRAELEEAVVNISI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00336198;
90% Identity: iTF_00336198; iTF_00337806;
80% Identity: -