Cfus012682.1
Basic Information
- Insect
- Chymomyza fuscimana
- Gene Symbol
- ken1
- Assembly
- GCA_949987675.1
- Location
- OX465089.1:40929584-40932112[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.039 4.1 8.6 5.9 2 23 287 308 286 308 0.96 2 12 0.006 0.63 11.2 0.8 1 23 314 339 314 339 0.92 3 12 0.0029 0.3 12.2 2.7 1 23 346 371 346 371 0.96 4 12 0.00027 0.028 15.4 2.2 1 23 383 405 383 405 0.97 5 12 1.9e-06 0.0002 22.1 0.1 1 23 412 434 412 434 0.98 6 12 0.012 1.3 10.2 0.2 1 23 440 462 440 462 0.97 7 12 0.00024 0.025 15.5 2.3 1 23 468 491 468 491 0.98 8 12 0.0022 0.23 12.5 2.5 1 23 497 519 497 519 0.97 9 12 0.014 1.4 10.0 1.7 2 23 526 547 525 547 0.96 10 12 0.00012 0.012 16.6 0.2 1 23 646 669 646 669 0.95 11 12 0.076 7.9 7.7 2.1 1 23 675 697 675 697 0.77 12 12 3.2e-06 0.00033 21.5 3.1 1 23 703 725 703 725 0.98
Sequence Information
- Coding Sequence
- ATGAACGACGGGAGTCAATACTCCATACATACCATATGCCGCATATGCTTAAACCATTTGCAAAATGATGCGGcatatgatttatttttggttCCGGGCTTGGCGAAAAAACTTTGTATGTGCACGTCACTGTCTGTGGAACAACACGATGGATTTCCCAAAAACCTGTGTTCTATTTGCTATACCAGGCTTAATGATATGCacgattttcaaaaactttgcgTGGATTCGGTTCAAAAATTTCAGGATTTGGTTGCAAGCAATGCATTTACATGCTCAGTTAATAACTTTGACGTTTTAGACCCAAGCACCTCCATTAACGATGCAGAGTTGGCAGGCGAGGATGAAGATGCACTAAATTTTGACCCACTTTTGAACCACAAAATGGAGTTGATCGAAACCGAAGAGGATGTGTTTAAAATGCTGGAAAATGTCGACAAGGAAGCTGAAAAAGTGGAGCGTGAAGTCGAAAAAGCTGAAAAGAAAGCTCAGCTGCAAAATGAGCGTGAGCGTGACCGTGAGCTCTTCGATGAGGCTGAAAAATCTTCAAATGAAAGTGGTAACGAcgattttaatgatttcaaCGATTTCAATGATTCTGAATCTAACAGCAGCGATGATGATGTACCCTTGGCACAACGTCTGCGTGGAAATCCGAAAAAGCGTACAGCTAAAGCGAAGCCCAAGAAAAAGGAGAAAAAGAATGACCCCTTTtccgacgacgatgatgatgatgatgatgacgatgatgacgattTTAGCGCAGAATCTGATGATGATTATAAGGAGGACAAGCCCAGAGAAAAACCGAAACGCAAGCGTATTCCAGCCGCTGAGCGCCATTTACATAAAACAATTGAATGCCACATTTGTCATCAGAAATTCAAAAAAGCTATACGTTATGAGGAGCATATGAAGCACCACAACGATCTTTTGCCGTTCCAATGCAAAGTAGAGACCTGTAGAAAGGGTTTCACAACTGTCAGTGGTCTGCGCTTGCATGTTGACCACGCCCACACCGAACTCTCTGAAGTGCATACTTGCCATGTTGAGGGCTGCGGCAAGACATTCCCACGCATACGTCTCCTAACTTTCCATATGAAAAAAGTACACAATATGTCCAAGTCAGCAGCTCCGCCAAGAAGTTTCCCTTGTACGGAATGTGATACAGTATTCCGGTGTCCCACGGCTTTGAAAAAGCATATGTACAAGCACGATGGAAAGGAGTTACCATATCCATGCAATATTTGCGGCAAGCGTTTTGTCATTAACAGTGCTCTGCGAGATCATCTTATGCGCCATGCTGGCATTAAGAACCACGTGTGCCCATACTGTGGAGTTGGTAAAACTACGCGCCAGGAATGGAATGCTCACATTTTGACGCACACCCAGGAAAAGAAGTTTAAGTGCACAAAATGTGATCACACTTCAACCAATCGGCAAGCACTCTCTAATCACATCAAGGTAGTTCATGAAAAGATTAAGAATTATGCCTGCCAATATTGTGGCAAAACTTTTGGAAAGTCCTATGCCTGCAAGATACACGAACGATCCCACACTGGAGAAAAGTGTTCCGAATGTAAGGTCTGTGGCAAGGTATTCCTTTGTGCTAAGAGTTTGGTCAAGCACTTGAAGACCCATGAAAAACGAGAACTTCCAAATTATAATCAAACTGGTACCGCCGGTGGCGCCTCCGCAGCAGGGACAGTAGCAGCACCAACAGGAGCTGAGGGTGGCGACATGACAATGTTGCCTCCAAATCCTATGATCGAGCAAATGAAAATGCCCCCACTTCCGAAAAAGCCTAAAGCTAAAAATGGACGCGTGGAACGTGTTGATCTATCACAGTTGGCCGGAACGGCTGTTAATCCCATACCGTCTGTATCACTACCCTCATGGTCGCCACAGGTCAATTATGAAAAGAAGGAGGGCCAACATATTTGTCCAGGCTGCGGACGTGGTTTTAATAACATTGGTAACATGAAACTTCATTACAAGATTATACACGAGAAGGTCAAAGATTTTGCATGTCGTTTCTGCCCGAAACGTTTTTCAAAGGCACAAATTTTACGTCATCATGAGTATATTCACACAGGCGAAAAACCATTTGAGTGCAAGCTATGCGGCAGACATTTCCGTCAAGAGACGGCGCTTAAAAAGCATCAGAAAGTACATGAGAGGGGCGGACCCATACAACGAGTAAAAGAGGAACCACATACGACAAGGGCACCCAAGGTCTCActcaaaaagtttgaaaatccTGAAAACGTTCCCAAATTTGAAGATGCTGCAGCCGAAAGAGCTGCTGCCTCTGCTGAAATACAGCTCAAGCAAATGGAGGAATATGAAGCCAAACGAAAAGCTGACGAGGAACGGCGCAAAATACAAGAGGCTGCTTATGAACAATTACAAAAGTTGCAGAAGCAACAGGAAATTGAAAAGGCTTCAACTTCCTATGATGGCTATTTTGCAGCAAAAGCTCAAGCGGATGGCACCAGCATTGATGCTTTTAAATTGGACCATGTTTAA
- Protein Sequence
- MNDGSQYSIHTICRICLNHLQNDAAYDLFLVPGLAKKLCMCTSLSVEQHDGFPKNLCSICYTRLNDMHDFQKLCVDSVQKFQDLVASNAFTCSVNNFDVLDPSTSINDAELAGEDEDALNFDPLLNHKMELIETEEDVFKMLENVDKEAEKVEREVEKAEKKAQLQNERERDRELFDEAEKSSNESGNDDFNDFNDFNDSESNSSDDDVPLAQRLRGNPKKRTAKAKPKKKEKKNDPFSDDDDDDDDDDDDDFSAESDDDYKEDKPREKPKRKRIPAAERHLHKTIECHICHQKFKKAIRYEEHMKHHNDLLPFQCKVETCRKGFTTVSGLRLHVDHAHTELSEVHTCHVEGCGKTFPRIRLLTFHMKKVHNMSKSAAPPRSFPCTECDTVFRCPTALKKHMYKHDGKELPYPCNICGKRFVINSALRDHLMRHAGIKNHVCPYCGVGKTTRQEWNAHILTHTQEKKFKCTKCDHTSTNRQALSNHIKVVHEKIKNYACQYCGKTFGKSYACKIHERSHTGEKCSECKVCGKVFLCAKSLVKHLKTHEKRELPNYNQTGTAGGASAAGTVAAPTGAEGGDMTMLPPNPMIEQMKMPPLPKKPKAKNGRVERVDLSQLAGTAVNPIPSVSLPSWSPQVNYEKKEGQHICPGCGRGFNNIGNMKLHYKIIHEKVKDFACRFCPKRFSKAQILRHHEYIHTGEKPFECKLCGRHFRQETALKKHQKVHERGGPIQRVKEEPHTTRAPKVSLKKFENPENVPKFEDAAAERAAASAEIQLKQMEEYEAKRKADEERRKIQEAAYEQLQKLQKQQEIEKASTSYDGYFAAKAQADGTSIDAFKLDHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336164; iTF_00337775; iTF_00339353; iTF_00336956;
- 90% Identity
- iTF_00339353;
- 80% Identity
- -