Ccau007008.2
Basic Information
- Insect
- Chymomyza caudatula
- Gene Symbol
- ken1
- Assembly
- GCA_035041775.1
- Location
- JAWNKW010000137.1:5322225-5324735[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.038 2.9 8.6 5.9 2 23 285 306 284 306 0.96 2 12 0.0027 0.21 12.2 0.8 1 23 312 337 312 337 0.92 3 12 0.0027 0.21 12.2 2.7 1 23 344 369 344 369 0.96 4 12 0.00028 0.022 15.3 1.5 1 23 381 403 381 403 0.97 5 12 1.9e-06 0.00015 22.1 0.1 1 23 410 432 410 432 0.98 6 12 0.012 0.92 10.2 0.2 1 23 438 460 438 460 0.97 7 12 0.00023 0.018 15.5 2.3 1 23 466 489 466 489 0.98 8 12 0.0021 0.16 12.6 2.5 1 23 495 517 495 517 0.97 9 12 0.013 1 10.0 1.7 2 23 524 545 523 545 0.96 10 12 0.00011 0.0086 16.6 0.2 1 23 640 663 640 663 0.95 11 12 0.096 7.4 7.3 1.3 1 21 669 688 669 691 0.75 12 12 3.1e-06 0.00024 21.5 3.1 1 23 697 719 697 719 0.98
Sequence Information
- Coding Sequence
- ATGAACGAAGGGAGTCAATACTCCATACATACCATATGCCGCATTTGCTTAAACCATTTGCAAAACGATGCGgcatatgatttatttttggttcCGGGCTTGGCGAAAAAACTTTGTATGTGCACGTCACTGTCTGTGGAACAAAACGATGGATTTCCCAAAAACCTGTGCTCAATGTGCTATACCAGGCTTAATGATATGCacgattttcaaaaactttgcgTGGATTCGGTTCAAAAGTTTCAAGATTTGGTTGCAAGCAATGCATTTACATGTTCAGTTAATAACTTTGACGTTTTAGACCCAAGCACCTCCATTAACGATGTAGAGTTGGCAGGCGAGGATGAAGATGCGCTTAACTTTGACCCACTTTTAAACCACAAAATGGAGTTGATCGAAACCGAAGAGgatgtatttaaaatgttggaaaatgttGACAAGGAAGCTGAAAAAGTGGAGCGTGAAGTTGAAAAGGCTGAAAAGAAAGCCCAGCAGCAAAGTGAACGTGAGCGTGACCGTGAGCTCTTCGATGAGGCTGACAAATCTTCAAATGAAAGTAGTAACGatgattttaatgatttcaatGACTTCAATGATTTCGAGTCTAATAGCAGCGATGATGATGTACCATTGGCACAACGTCTGCGTGGAAATCCTAAGAAGCGTGCAGCCAAACCGAAGCCCaagaagaaggagaaaaaGGGTGACGCCTTTTCCGACGATGATgaagacgatgatgatgacgatgatttCAGCGCTGAATCTGATGACGATTATAAAGAGGAGAAGCCCAGAGAAAAACCGAAACGCAAGCGTATTCCGGCCGCTGAGCGCCATTTACATAAAACTATTGAATGCCACATTTGTCATCAGAAATTCAAAAAGGCTATACGTTATGAGGAGCATATGAAGCATCACAACGATCTTTTGCCGTTTCAATGCAAAGTGGAGACCTGTAAAAAGGGTTTTACCACTGTCAGTGGTCTGCGCTTGCATGTTGACCACGCCCACACCGAGCTCTCTGAAGTACATACTTGCCATGTTGAGGGCTGCGGCAAGACATTCCCACGCATACGTCTGCTAACTTTCCATATGAAAAAAGTACATAATATGTCTAAGTCAGCAGCGCCGCCAAGAAGTTTCCCATGCACGGAATGTGATATAGTATTCCGGTGTCCCACGGCTTTGaaaaaacatatgtacaaGCACGATGGCAAAGAGCTACCATATCCCTGCAACATTTGCGGAAAGCGTTTCGTCATAAATAGTGCTCTGCGAGATCATCTTATGCGCCATGCTGGAATCAAGAATCATGTGTGCCCATATTGTGGCGTTGGTAAAACTACCCGACAAGAATGGAACGCTCACATATTGACGCACACGCAGGAAAAGAAATTCAAGTGCACCAAATGCGATCACACTTCAACTAATAGGCAAGCACTCTCCAATCACATCAAGGTAGTTCATGAAAagattaaaaattatgcatgtCAATATTGTGGCAAAACGTTTGGAAAGTCCTATGCCTGCAAAATACATGAACGATCCCACACTGGAGAAAAGTGTTCCGAGTGTAAGGTCTGTGGAAAGGTATTCCTTTGTGCTAAGAGTCTGGTTAAGCATTTGAAGACTCACGAAAAACGAGAACTTCCAAATTACAATCAAACAGGCACCGCAGGAGGTGCCGCCCCAGTGTTAGGGGTTGAGGGAGGCGACATGTCAATGCTGCCTCCAAATCCTATGATcgaacaaatgaaaatgcctCCTCTTCCCAAACCGACCAAGCCTAAAGCTAAAAATGGACGCGTGGAACGTGTTGATCTATCCCAATTGGCCGGCACGGCTGTTAATCCCATACCGTCTGTATCATTGCCGTCGTGGTCACCACAGGTCAATTTCGAAAAGAAGGAAGGCCAGCATATTTGCCCAGGTTGTGGACGTGGCTTTAATAATATTGGTAACATGAAACTCCATTACAAGATCATACATGAGAAGGTCAAAGATTTTGCATGTCGTTTTTGCCCGAAACGCTTTTCTAAGGCACAAATTTTACGACATCATGAATGGATTCACACTGGCGAAAAACCATTTGAATGCAAACTATGCGGCAGACATTTCCGTCAAGAGACAGCGCTTAAGAAGCATCAGAAGGTACACGAGAAGGGCGGGCCCATCCAGAGAGTAAAAGAGGAATCAGAGCCCCAAAGGGCACCCAAGACTTCActcaaaaagtttgaaaatccTGATAACGTTCCCAAATTCGAAGACGCTGCAGCCGAAAGagctgctgcctctgctgAATTACAGGCCAAGCAAATGGAGGAATACGAAGCTAAACGAAAAGCTGACGAGGAACGTCGTAAAATACAAGAGGCTGCTTATGAACAATTACAAAAGTTGCAGAAGCAACAGGAAATCGAAAAGGCTTCGACTTCGTATGATGGCTATTTTGCAGCAAAAGCTCAAGCCGATGGCACCAGCCTTGATGCTTTCAAATTGGACCATGTTTAA
- Protein Sequence
- MNEGSQYSIHTICRICLNHLQNDAAYDLFLVPGLAKKLCMCTSLSVEQNDGFPKNLCSMCYTRLNDMHDFQKLCVDSVQKFQDLVASNAFTCSVNNFDVLDPSTSINDVELAGEDEDALNFDPLLNHKMELIETEEDVFKMLENVDKEAEKVEREVEKAEKKAQQQSERERDRELFDEADKSSNESSNDDFNDFNDFNDFESNSSDDDVPLAQRLRGNPKKRAAKPKPKKKEKKGDAFSDDDEDDDDDDDFSAESDDDYKEEKPREKPKRKRIPAAERHLHKTIECHICHQKFKKAIRYEEHMKHHNDLLPFQCKVETCKKGFTTVSGLRLHVDHAHTELSEVHTCHVEGCGKTFPRIRLLTFHMKKVHNMSKSAAPPRSFPCTECDIVFRCPTALKKHMYKHDGKELPYPCNICGKRFVINSALRDHLMRHAGIKNHVCPYCGVGKTTRQEWNAHILTHTQEKKFKCTKCDHTSTNRQALSNHIKVVHEKIKNYACQYCGKTFGKSYACKIHERSHTGEKCSECKVCGKVFLCAKSLVKHLKTHEKRELPNYNQTGTAGGAAPVLGVEGGDMSMLPPNPMIEQMKMPPLPKPTKPKAKNGRVERVDLSQLAGTAVNPIPSVSLPSWSPQVNFEKKEGQHICPGCGRGFNNIGNMKLHYKIIHEKVKDFACRFCPKRFSKAQILRHHEWIHTGEKPFECKLCGRHFRQETALKKHQKVHEKGGPIQRVKEESEPQRAPKTSLKKFENPDNVPKFEDAAAERAAASAELQAKQMEEYEAKRKADEERRKIQEAAYEQLQKLQKQQEIEKASTSYDGYFAAKAQADGTSLDAFKLDHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00338600;
- 90% Identity
- iTF_00339353;
- 80% Identity
- -