Basic Information

Insect: Chymomyza fuscimana
Gene Symbol: -
Assembly: GCA_949987675.1
Location: OX465088.1:102332574-102340276[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0095 0.99 10.5 0.5 2 23 397 418 396 418 0.96

2 15 0.002 0.2 12.7 2.3 1 23 502 525 502 525 0.97

3 15 0.055 5.7 8.1 1.6 1 21 532 552 532 553 0.92

4 15 0.029 3.1 9.0 3.8 1 23 562 584 562 584 0.98

5 15 0.0002 0.021 15.8 0.1 1 23 591 614 591 614 0.95

6 15 0.0018 0.19 12.8 1.1 2 23 622 643 621 643 0.96

7 15 0.027 2.8 9.1 0.0 2 21 670 689 669 690 0.94

8 15 0.0083 0.86 10.7 5.0 1 23 735 758 735 758 0.98

9 15 0.022 2.3 9.4 0.9 1 23 795 817 795 818 0.94

10 15 0.019 2 9.6 1.5 2 23 838 860 837 860 0.95

11 15 0.0004 0.041 14.9 0.3 1 23 874 896 874 896 0.95

12 15 0.0001 0.011 16.7 0.5 1 23 902 924 902 924 0.99

13 15 7.1e-05 0.0074 17.2 3.2 1 23 930 952 930 952 0.98

14 15 0.00011 0.011 16.7 7.1 1 23 958 980 958 980 0.98

15 15 5.8e-05 0.0061 17.5 0.4 1 23 986 1010 986 1010 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0095	0.99	10.5	0.5	2	23	397	418	396	418	0.96
2	15	0.002	0.2	12.7	2.3	1	23	502	525	502	525	0.97
3	15	0.055	5.7	8.1	1.6	1	21	532	552	532	553	0.92
4	15	0.029	3.1	9.0	3.8	1	23	562	584	562	584	0.98
5	15	0.0002	0.021	15.8	0.1	1	23	591	614	591	614	0.95
6	15	0.0018	0.19	12.8	1.1	2	23	622	643	621	643	0.96
7	15	0.027	2.8	9.1	0.0	2	21	670	689	669	690	0.94
8	15	0.0083	0.86	10.7	5.0	1	23	735	758	735	758	0.98
9	15	0.022	2.3	9.4	0.9	1	23	795	817	795	818	0.94
10	15	0.019	2	9.6	1.5	2	23	838	860	837	860	0.95
11	15	0.0004	0.041	14.9	0.3	1	23	874	896	874	896	0.95
12	15	0.0001	0.011	16.7	0.5	1	23	902	924	902	924	0.99
13	15	7.1e-05	0.0074	17.2	3.2	1	23	930	952	930	952	0.98
14	15	0.00011	0.011	16.7	7.1	1	23	958	980	958	980	0.98
15	15	5.8e-05	0.0061	17.5	0.4	1	23	986	1010	986	1010	0.91

Sequence Information

Coding Sequence: ATGCGATTGCCTAAATTTTGCCGTACTTGTGACACAGAAGATGCCGGAAGCCTTTACAAACTCTCAGCACTTTCAAACAACTATCCGGATAGAATGCTTTCAGAACTGCTAAGTGATCTAACCAAAATTGAATCAAGTGGTGCCTCCTCAGAAAAGATGCCTCAAACAATATGCGACAATTGTAGGCATAAATTGTACAACGCTTACGAGTTTGTAGTACAAGCGCGTGAAGCTTATGAACTCCTTATGGGACACCGGCTAGAAGTTGGATTTAAAGAAAACAATGTTTGTTTACAAAGTTTTCACACACAGCTGCGCAATGAACATGATAAATTTAAAGACATATCTGCCGATATACAATGCAACACCTCCAGACTAGAAACTTTCGAAATTATCAATGCAGATATTGGGGAATATGACGAAAAAATACTTGAAAGTGATCTTTTGTGTTATCATAACAAAGATCCATTAGTTTTGAATACACGTGAACTCACATGGGATAATATAGATCCCTTGGTTGGCAATATAAGTGCAAACGAAAATAGTGAATCAATATTCTATCATCAGGAAATGCATCAATCTAACTTGACCAACACCATGCAAATAAATACAGCAACTTTAGATCCTCTAGTAGTGGATGCACAGCATCTGTGTACATCTcccttttcaaattttatacaaataaccGCCGAAAGCTTAAATCATGTAGTGAAAGATATTCAATCACCATTCAGTTTTTACCAATTAACGGATCAATCCATTCCTTTAAGTAACACTGAAATAAACGATAGTGGCTCCGATCCGTTACTTATGGATGTAAACGATCTCGAGCAggaccaaataaaatttatgcaatatCCCCAAACGGATGAAAACTCAAATACAGACACAAACGATATTCCAGTTGTGGGCATGAATGATGACAAACAGAATGAAATAACTGCTCAAAAAGACTTGGAAACCACGACTGATGAAATctgtaACCAAAATCGTAAGAAGTTACTAACTAAAATTGACTTCTACGATAACAGAAAAAAAGATAACATGTCGAAAGACGAGGAAGCTCAGCAGAAACTTATTCAGAATAGTTCTGTTCCTTCCATGATAGGTGTAAAAAACCTTTGCAAACGTAGAGATGTCCAAGAGGTTGATATTAATATGTGCAAGCCTCACGGACTCAAACTCATTCAGTGCATGATATGTCAGAATACATATAGAAAAATCTCAGAGTTACGTAGTCATCTTAACGATCATCCTGTCATAAATAGCACACAACATAAACAAGTGGATTCCAGCGAACTTATTAATTTACTGTATCCAGATCTGAAAAAACTAAGTAGCCTACAGGTATATGATCGTATAGCTAAAGACTTGACTGCTGGAAACTATACGCGCTTCTACTCGATAACCAATCAATGCGGCTATGAATTGGATCTATATAGTTCAGAGACAGAAAGCGAAACAGAGGAGAAAAGTAATGTAGCAGTAAAGTACAAAAGAAATTATGTTTGCGAACTTTGCCAGCAAAACTATGGACGCAAGCACCAGCTTTATGAGCATCAACGATTGCAGCATCCTTGGAGCGAGGCTTTGCATATTTGCAGGCGTTGTAATGCGCGTTTTGTAAGTCGCCAACTACTAAACCATCATTACATCACTCAATGCAAGAATACCTCAAAACGATATGTGTGTCGGCATTGTCCATTGCGATTTTACTGGAAGAATAACTTTAAGGCTCATACCAAAAGCCACAAAAATGTGAATCAAACTTTTGCGTGTGTTGTCTGTGGAAGGAGTTTTGCGGAACAAAAGTCGCTGAGCGTGCATCTACTTAGCGTTCATGCCGACGAAGACCAGTTGGTACCATGTCTTTGGTGCAGCCGAAAGTTTTATCGCCGCGATTTTATGATCAAGCATTTAAGGCGGCATGGCTTAACAGAGCAAGATCTACCATTAGCAGAAACACTTCTTGTTGCCACATCAAAACCGCATGGTCTTAAAGATATTACCTGCAAGATTTGCGAAATACAATTCGAAAGTATAGCAGAATTGCGTCTTCATATACAGATAGAAGAAAAATTGTGCGGTAGCATGCATTTCCCCTATGAATCGAGGCAAAATTACTCGATAACAAATGAGTTTGGTTTTGAGCTAGACCTAGATGATTCGGAAACAGATGATGAAATTACTGTGCCAACTCTATATACATGTGATCTCTGCCACATTCAATGTCAACGCAAGTTTGAACTGATGGAACATCAACGCACTATGCATAATTTTGACAAGATGCCCTATGAATGCGAgcattgcatatttaaatgtgTTTCCAAGAACGTTATGGATCATCATAAGCTGGATCAATGCCTTAATGAAGAAAAGAGGTATGTCTGTCCTAAATGCAATTACAAGTTTATGTGGCCCGAAAACCAGCAACAGCATATATTATTGCATCATGAAGGATACGGAGAGTCTACTAAGAAGCAACCAGTTTGTGAAACAAGCAAGTTTTTGCAATGTCCGCACTGTGATCGAACGTATCTATTGCGCACCCGTTTAAATAATCACATACGAAATATACATCTTAACGACAATAACAAACTTAAGATTTCAGCTAAAAAATTTCTCTGCTCTCTATGTGGAAAGGAAATGACTTCCAGAGCCAGTTTGGTCATACACATGCGACGCCATGCGGGTGAAAAGCCTTTTAAATGTGATCTTTGTGAAATGGCCTTTCCACGACATGCTGAATTGGTGTACCACCAGCGTATACACACTGGTGAAAAGCCTTTTGAGTGCACCATATGTGCAAAGAGATTTGCGTATTCACATAAACTCAAGCGACACACGATTACTCATAGTAGTCTAAAACTGCATAAGTGCACATATTGTAACAAAAGTTACAGGCACTCCAAAGATTTAAATATGCACTTGAAGCTGCACACGGGGAAACAGTCGTTTGTGTGTGAAACTTGTGGTGAAAGCTTTATACTGAGTAGCACATTGGAGAAGCATCGCATGATGCGCCGTCATTTTGTTGACACCGTGTAA
Protein Sequence: MRLPKFCRTCDTEDAGSLYKLSALSNNYPDRMLSELLSDLTKIESSGASSEKMPQTICDNCRHKLYNAYEFVVQAREAYELLMGHRLEVGFKENNVCLQSFHTQLRNEHDKFKDISADIQCNTSRLETFEIINADIGEYDEKILESDLLCYHNKDPLVLNTRELTWDNIDPLVGNISANENSESIFYHQEMHQSNLTNTMQINTATLDPLVVDAQHLCTSPFSNFIQITAESLNHVVKDIQSPFSFYQLTDQSIPLSNTEINDSGSDPLLMDVNDLEQDQIKFMQYPQTDENSNTDTNDIPVVGMNDDKQNEITAQKDLETTTDEICNQNRKKLLTKIDFYDNRKKDNMSKDEEAQQKLIQNSSVPSMIGVKNLCKRRDVQEVDINMCKPHGLKLIQCMICQNTYRKISELRSHLNDHPVINSTQHKQVDSSELINLLYPDLKKLSSLQVYDRIAKDLTAGNYTRFYSITNQCGYELDLYSSETESETEEKSNVAVKYKRNYVCELCQQNYGRKHQLYEHQRLQHPWSEALHICRRCNARFVSRQLLNHHYITQCKNTSKRYVCRHCPLRFYWKNNFKAHTKSHKNVNQTFACVVCGRSFAEQKSLSVHLLSVHADEDQLVPCLWCSRKFYRRDFMIKHLRRHGLTEQDLPLAETLLVATSKPHGLKDITCKICEIQFESIAELRLHIQIEEKLCGSMHFPYESRQNYSITNEFGFELDLDDSETDDEITVPTLYTCDLCHIQCQRKFELMEHQRTMHNFDKMPYECEHCIFKCVSKNVMDHHKLDQCLNEEKRYVCPKCNYKFMWPENQQQHILLHHEGYGESTKKQPVCETSKFLQCPHCDRTYLLRTRLNNHIRNIHLNDNNKLKISAKKFLCSLCGKEMTSRASLVIHMRRHAGEKPFKCDLCEMAFPRHAELVYHQRIHTGEKPFECTICAKRFAYSHKLKRHTITHSSLKLHKCTYCNKSYRHSKDLNMHLKLHTGKQSFVCETCGESFILSSTLEKHRMMRRHFVDTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00337813;
90% Identity: iTF_00337813;
80% Identity: -