Ccos007066.1
Basic Information
- Insect
- Chymomyza costata
- Gene Symbol
- -
- Assembly
- GCA_018150985.1
- Location
- JAECWU010000002.1:8806711-8810679[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0068 0.55 10.9 0.6 2 23 395 416 394 416 0.96 2 13 0.0017 0.14 12.8 2.3 1 23 500 523 500 523 0.97 3 13 0.064 5.1 7.8 0.6 1 20 530 549 530 551 0.92 4 13 0.074 5.9 7.6 4.1 1 23 560 582 560 582 0.98 5 13 0.00018 0.014 15.9 0.1 1 23 589 612 589 612 0.95 6 13 0.00022 0.017 15.6 0.8 2 23 620 641 619 641 0.96 7 13 0.021 1.7 9.3 0.0 2 21 668 687 667 688 0.94 8 13 0.026 2.1 9.0 7.0 1 23 733 756 733 757 0.97 9 13 0.002 0.16 12.5 0.8 1 23 793 815 793 816 0.95 10 13 0.016 1.3 9.7 1.5 2 23 834 856 833 856 0.95 11 13 0.062 4.9 7.9 0.2 1 23 870 892 870 892 0.94 12 13 0.00044 0.035 14.6 0.9 1 23 898 920 898 920 0.98 13 13 6.9e-06 0.00055 20.3 2.9 1 23 926 948 926 948 0.98
Sequence Information
- Coding Sequence
- ATGCGATTGCCTAAAATTTGCCGTACATGTGACACAGAAGATGCCGGAAGCCTTTACAAACTCTCAGCACTTTCAAACAACTATCCGGATAGAATGCTTTCAGAATTGCTAAGTGATCTAACCAAAATTGAATCTAGTGGTGACTCCTCAAAAAAGCTGCCTCAAACAATATGCGACAATTGTAAGCATAAATTGTACAACGCTTATGAGTTTGTAGTACAAGCACGTGAAGCTTATGAACTGCTTATGGGACACCGGCTAGAAGGTGGATTTAAAGAAAACAATGTTTGTTTACAAAAATTTCACACGCACCTGCGCAATGAACATGATCAATTTAAAGACATATCTACCGATACGCAATGCAACACCTCAAGACTTGAAACTTTTGACATTATTAATGTCGATATTGGGGAACATGACGAAAAAATACTTGAAAGTGATCTTTTGTGTAATCATAACAAAGATCCATTAGTTTTGAATACACATGAACTCACATGGGATAATATAGATCCATTAGTTGGCAATATGAGTGCAAAAGAAAATAGTGAATCAACATTCTATCATGAGGAAATGCATCAATGTAGCTTGATCAATACCATGCAAATTAATGCAGAAACTTTAGATCCTCTAGTAGTGGATGCAGAGCATCTGTGTACATCTCCCTTTTCGAATTTTATACAAATAACCGCCGATAGCTTTAGTTCTGTAGTGAAAGAGATTCAATCACCATTCAGTTTTTGCCAATTCACGGATCAATCCATACCTTTAAGTAACACTGAAATAATCGATAGTTGCTCCGATCCGTTACTTATGGATGTAAACGATCTTGAGCAGGACCAAATAACATTTATGCAATTTTCCCAAACGGAAAAAAACTCAAATTTAAACGACTTGAAAATTAATAAAGACACAAAAGATGAACAGAATGAAACAACTGCTCAAAAAGACTTCGAAACCACGGCTGATGAAATCTGGAACCAAAATCGTAAGAAGTTACTAACAAAAATTGACTTCTACGATAACAGAAAAAAAGATAACATGTCGAAAGACGAGGAAGCTCATCAGAAACTTCTTCAGAATAGTTCTGTTCCTTCCATGATAGGTGTAAAAAACCTTTGCAAACGTAGAAGTGTCCAAAACGTTGATATTAATATGTGCAAGCCTCACGGACTCAAACTCATTCAGTGCATGATATGTCAGAATACATATAGAAAAATCTCAGAGTTACGTAGTCATCTTAAAGATCATCCTGTCGTAAATAGCACACAACATAAACAAGAGGATTCCAGCGAGCTTATTAATTTACTGTATCCAGATCTGAAAAAACTAAGTGGCCTACAGGTATATGATCGTATAGCTAAAGACTTGACTGCTGGAAACTATACGCGCTTCTACTCGATAACCAATCAATGCGGTTATGAATTGGATCTATATAGTTCGGAGACAGAAAGCGAAACAGAGGAGAAAAGTGATGTAGCAGTAAAGTACAAAAGAAATTATGTTTGCGAACTTTGCCAGCAAAACTATGGACGCAAGCACCAGCTTTATGAGCATCAACGATTGCAGCATCCTTGGAGCGAGGCATTGCATATTTGCAGCCGCTGTAATGCGCGTTTTGTAAGTCGCCAACTACTAAACTATCATTACGTCACTCAATGCAAGAATACCTCAAAACGATATGTGTGTCGGCATTGTCCATTGCGATTTTACTGGAAGAATAACTTTAGGGATCATACCAAAAGCCACAAAAATGTGAATCAAACTTTTGCGTGTGTCGTCTGTGGAAGAAGTTTTGCGGAACAAAAGTCGCTGAGCGTGCATCTACTAAGCGTTCATGCCGACGAAGACCAGTTGGTACCATGTCTTTGGTGCAGCCGAAAGTTTTATCGCCGCGATTATATGATCAAGCATATAAGGCGGCATGGCCTAACAGAGCAAGATCTACCATTAGCAGAAACACTTCTCGCTGCCACATCAAAACCGCATGGTCTTAAAGATATTACCTGCAAGATTTGCGAAATACAATTCGAAAGTATGGCAGAATTGCGTCTTCATATACAGCTAGAAGTAAAATTGTCCGGTTGCATGCATTTCCCCTATGAATCGAGGCAAAACTACTCTATAACAAATGAGTTTGGTTTTGAGCTAGACCTAGATGATTCGGAAACAGAGGATGAAATTACTGTGCCAACTCTATATACATGTGATCTCTGTCATATTCAATGTCAACGCAAGTTTGAACTGATGGAGCATCAACGCACTATGCATCATTTTGACAAGATGCCCTATGAATGCGAGCATTGCATATTTAAATGTGTTTCCAAGAACGTTATGGATCATCATAAGCTGGGGCAATGCCTTAATGAAGAAAAGAGGTATATCTGTCCCAAGTGCACTTACAAATTTATGTGGCCCGAAAACCTGCAACAGCATATATTATTGCATCATGAAGGATACGAAGAGTCAACTAAGAAGCAACCCGTTTGTAAAAAGGTTTTGCAATGTCCGCACTGTGATCGAACGTATCTATTGCGCACCCGTTTAAATAATCACATCAGAAATATACATCTTAACGACAATAACAAACTTAAGATTTCAGCCAAAAATTTTCTCTGCTCTCTTTGTGGAAAGGAAATGCTTTCTAGAGCCAGTTTGGTCATACACATGCGACGCCATGCGGGTGAAAAGCCTTTTAAATGTGATCTCTGTGAAATGGCCTTTCCACGACATGCTGAATTGGTTTACCACCGGCGTCAACACACTGGTGAAAAGCCTTTTGAGTGCACCATATGTGCAAAGAGATTTGCGTATTCACATAAACTCAAGCGACACATGATTACCCATAGTAGTCTAAAACCGCATAAGTGCATATAA
- Protein Sequence
- MRLPKICRTCDTEDAGSLYKLSALSNNYPDRMLSELLSDLTKIESSGDSSKKLPQTICDNCKHKLYNAYEFVVQAREAYELLMGHRLEGGFKENNVCLQKFHTHLRNEHDQFKDISTDTQCNTSRLETFDIINVDIGEHDEKILESDLLCNHNKDPLVLNTHELTWDNIDPLVGNMSAKENSESTFYHEEMHQCSLINTMQINAETLDPLVVDAEHLCTSPFSNFIQITADSFSSVVKEIQSPFSFCQFTDQSIPLSNTEIIDSCSDPLLMDVNDLEQDQITFMQFSQTEKNSNLNDLKINKDTKDEQNETTAQKDFETTADEIWNQNRKKLLTKIDFYDNRKKDNMSKDEEAHQKLLQNSSVPSMIGVKNLCKRRSVQNVDINMCKPHGLKLIQCMICQNTYRKISELRSHLKDHPVVNSTQHKQEDSSELINLLYPDLKKLSGLQVYDRIAKDLTAGNYTRFYSITNQCGYELDLYSSETESETEEKSDVAVKYKRNYVCELCQQNYGRKHQLYEHQRLQHPWSEALHICSRCNARFVSRQLLNYHYVTQCKNTSKRYVCRHCPLRFYWKNNFRDHTKSHKNVNQTFACVVCGRSFAEQKSLSVHLLSVHADEDQLVPCLWCSRKFYRRDYMIKHIRRHGLTEQDLPLAETLLAATSKPHGLKDITCKICEIQFESMAELRLHIQLEVKLSGCMHFPYESRQNYSITNEFGFELDLDDSETEDEITVPTLYTCDLCHIQCQRKFELMEHQRTMHHFDKMPYECEHCIFKCVSKNVMDHHKLGQCLNEEKRYICPKCTYKFMWPENLQQHILLHHEGYEESTKKQPVCKKVLQCPHCDRTYLLRTRLNNHIRNIHLNDNNKLKISAKNFLCSLCGKEMLSRASLVIHMRRHAGEKPFKCDLCEMAFPRHAELVYHRRQHTGEKPFECTICAKRFAYSHKLKRHMITHSSLKPHKCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00338577;
- 90% Identity
- iTF_00338577;
- 80% Identity
- -