Basic Information

Insect: Chymomyza fuscimana
Gene Symbol: -
Assembly: GCA_949987675.1
Location: OX465088.1:102353915-102357174[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0051 0.53 11.4 3.5 1 19 220 238 220 243 0.91

2 17 8.1e-06 0.00085 20.2 0.5 1 23 250 272 250 272 0.98

3 17 0.0011 0.11 13.5 0.5 2 23 304 325 303 325 0.95

4 17 0.0032 0.33 12.0 1.3 1 23 415 438 415 438 0.95

5 17 0.44 46 5.3 0.4 1 19 445 463 445 466 0.92

6 17 0.0068 0.7 11.0 4.2 1 23 475 497 475 497 0.95

7 17 4.1e-06 0.00043 21.1 0.8 1 23 504 527 504 527 0.97

8 17 0.00041 0.042 14.8 2.4 2 23 535 556 534 556 0.96

9 17 0.0064 0.67 11.1 0.1 2 21 583 602 582 603 0.94

10 17 0.00098 0.1 13.6 3.2 1 23 653 676 653 676 0.98

11 17 0.003 0.31 12.1 0.7 1 23 713 736 713 736 0.96

12 17 0.00013 0.014 16.4 1.6 2 23 768 790 767 790 0.95

13 17 0.00082 0.086 13.9 0.9 1 23 804 826 804 826 0.95

14 17 0.00018 0.019 15.9 1.2 1 23 832 854 832 854 0.99

15 17 3.4e-07 3.5e-05 24.5 2.6 1 23 860 882 860 882 0.98

16 17 4.6e-05 0.0048 17.8 4.7 1 23 888 910 888 910 0.97

17 17 4.1e-05 0.0043 18.0 0.6 1 23 916 940 916 940 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0051	0.53	11.4	3.5	1	19	220	238	220	243	0.91
2	17	8.1e-06	0.00085	20.2	0.5	1	23	250	272	250	272	0.98
3	17	0.0011	0.11	13.5	0.5	2	23	304	325	303	325	0.95
4	17	0.0032	0.33	12.0	1.3	1	23	415	438	415	438	0.95
5	17	0.44	46	5.3	0.4	1	19	445	463	445	466	0.92
6	17	0.0068	0.7	11.0	4.2	1	23	475	497	475	497	0.95
7	17	4.1e-06	0.00043	21.1	0.8	1	23	504	527	504	527	0.97
8	17	0.00041	0.042	14.8	2.4	2	23	535	556	534	556	0.96
9	17	0.0064	0.67	11.1	0.1	2	21	583	602	582	603	0.94
10	17	0.00098	0.1	13.6	3.2	1	23	653	676	653	676	0.98
11	17	0.003	0.31	12.1	0.7	1	23	713	736	713	736	0.96
12	17	0.00013	0.014	16.4	1.6	2	23	768	790	767	790	0.95
13	17	0.00082	0.086	13.9	0.9	1	23	804	826	804	826	0.95
14	17	0.00018	0.019	15.9	1.2	1	23	832	854	832	854	0.99
15	17	3.4e-07	3.5e-05	24.5	2.6	1	23	860	882	860	882	0.98
16	17	4.6e-05	0.0048	17.8	4.7	1	23	888	910	888	910	0.97
17	17	4.1e-05	0.0043	18.0	0.6	1	23	916	940	916	940	0.90

Sequence Information

Coding Sequence: atGAAACTTCCAATTATTTGCCGCACTTGCGATGCAAGGAACAGCGACAATTTATACAAACTTGCTACGCCCACAAAAAAATATCCTGAAAAAATGCTCTCAGATTTGTTGGCAGAATTGACCGAAATTGATCTAAATGGATCCTATGCACAAAAACTGCCACAATCACTCTGTAGTAGCTGCACAAGAAAATTAATTAGTGCATATTACTTCGTCAAGCAAGCCCGCAATGCCAACGAAGTATTAATGAATCACTTGCTAAATGGCCAGACAAGTGCTCCTCCCGATTGCTTACAAGAGCTTCCAATGGAGTTATGCGCCGAACAGCATGTTGAAATCAAAATGGAAACAAAAGATGATGAAGTAGACAATGTCATTACCTGCTCAGATCTGCCAGAGCTGTCACTTTTTCAGCAGGCAGAGGATTTGGATATTCTAGATGAAATTAAAGCAGATAGTGTAAAACCAATGAACGACCCATTAATATCACCAGAAGCGCTCAAGCAAGAGCATGATACGGATGCATCAAACACAGGCTTGGATGCGAATGATTTTCCTAGCCAGGACTACGAGTGTGACGATTCGCTCGACGATTTGCCATTACAACAGCGCGCTCACAAGTGGAAGCAAGACAAAAAGCCGAGCGGTAACAAAAGATATAACTGTTTTGAATGCTCTAGAAGCTTTAGCAGAGCGGTTTACCTAAAACAACATTGCGCACGCACACATAAACCTAAATCTGATTGGTTTTCCTGCACGCTATGCGTACGCAAGTTCAGTCGCAGCGATGCGCTTCAAGCTCATCTGAAGGTTCATAGAGACCCTAAACGATCGGCGAATCTCAATGATCGAAAACGAGCCAAGGACATAGATTTAAATCTCTGCAAGCCACATGGCTACAAGCTTATTGAATGCATGATTTGCCAAACCAAATTCGATAAGATGTCACAATTACGACAACACATGGAGGATCACCCCGACATAGATAATTTTGATGACCAGCAAAAGCTGAATGCCAATGATCTTGCGGAACTGTTATATCCCGATTTAAAAAACGTAACAGAGGAGCATTTGAAAACTCTTATACGAAAGGAGTTGGCATCTGGTGCCTACCAACGATTTTATTCAATAACCAGTCAGTGTGGTTATGAAATGGACTTAAACAGCTCGGAAACTGAAAGCGAAGCAGATTTGGAGGCCGAAGAACTTACAATGAGCcacaaaacaacacaaaaatcaaaatatttatgtcAGCTATGCCAGAACAAATACCCGCGTAAGTATCAGTTGTATGAACATCAACGTGTGTCTCACTCGTGGTCCGAGGCTCCACATGTATGCGGTCGGTGTGATGCGCGCTTTGTAAGCCTGCAAGTGCTGCGGCATCACAATGAATCTCAGTGCAAGAATGCCCAAAAGCGCTTTCTCTGTCACAAATGTCCCTTGAGATTTCGCTGGAAACATAACCTTAAGGCGCACGTTCGAGATCATCGCATCACAAACCAAACCTTTGAGTGTAATGAATGCAAACGCGTCTTTGACAAGAAAAAGTCACTTACTGTGCATATGCTTAGTGTCCATGTAGACGAATCCAAGCTTATCCCTTGTCAATGGTGCAGCCGAAAGTTTTATCGTCATGACTACTTGGTCAAGCATCTCAAGCGTCACGGCATCAATGAGCAGGACATACCATTGGCCGAGACACTCATAGACGCCACATCGAAACCTAATGGTCCAAAAAACATTACCTGCAAGATTTGCAATTTACAATTTGAGCACATCGTTGATTTGCGTGCCCATATACAACTAGAATTGAAGTTGGCGCTTTCGCTTCATCAAAACTACAAATCATTGGAGAATTACTCCATAACTAATGATTCGGGCTTTGAGCTCCAATTGGATGATTCAGAAACGGAAGATGAAGGCACTACCATGCCTTATAAAACTCCTTCGTTATACGTTTGCGAGCTGTGTCAAGTACAATGTCGGCGCAAGTATGAAATGACCCAACATCAACGTACTATGCATCGATTCGATAAAATGCCTTATGATTGCGAGCGTTGTATATTCAAGTGTGTTTCGAAGaacaTAATGGACCATCACAAGCAAGTGCAGTGCTTTAGTGAGCAAAAGAAACACGTGTGCAACAAATgtggttttaaatttatgtgGCCTGAAAATCTGGAAAAACATGTGCAAATCCAACATGGTGGCTGGCAACAAGAAGCTCTTGAAAACTCCGCACAGAAGCCAAAATCTGATATGAAAAGCGAAGTGTCTGAGGTTGGAGTGCAATTACTCCAATGCCCGCACTGTGATCGAACCTATCAAATGAAGTCGCGTCTTAACAATCACATACGGGATGTTCATGTCAATGGGGATCGTAAGCGCAAGGAGGCCATCAAGAAGTTCTTGTGTTCATTATGCGGAAGAGAGACGCATTCGGCGGCTAGCTTAGTTACGCACATGCGACGGCATACGGGCGAAAAACCTTTTAAATGTGATTTATGTGAGATGGCATTTCCTAGGCATTCCGAAATGGTGTCCCATAGACGCATGCATACTGGTGAAAAACCATTCCATTGTACAGTTTGTGGAAAGGATTTTGCACGTTCGGATAAACTTAAACGGCACATGCTAACTCACAGTGGTTTGAAACCACATAAATGCACCTACTGTGAGAAGAGCTATCGACAGTCTAAGGACTTAAAATTGCACCTGCAACAGCATACCGGAGAGTGTCCGTTTATATGTGCCACCTGTGGAGAACGCTTTATACAAAGAAGCTCATTGGAGAAACATCGCATGATGCGGCGGCATTTTGATGAGGTGGATGATAGAACCACACCAGCTGCCAAATAA
Protein Sequence: MKLPIICRTCDARNSDNLYKLATPTKKYPEKMLSDLLAELTEIDLNGSYAQKLPQSLCSSCTRKLISAYYFVKQARNANEVLMNHLLNGQTSAPPDCLQELPMELCAEQHVEIKMETKDDEVDNVITCSDLPELSLFQQAEDLDILDEIKADSVKPMNDPLISPEALKQEHDTDASNTGLDANDFPSQDYECDDSLDDLPLQQRAHKWKQDKKPSGNKRYNCFECSRSFSRAVYLKQHCARTHKPKSDWFSCTLCVRKFSRSDALQAHLKVHRDPKRSANLNDRKRAKDIDLNLCKPHGYKLIECMICQTKFDKMSQLRQHMEDHPDIDNFDDQQKLNANDLAELLYPDLKNVTEEHLKTLIRKELASGAYQRFYSITSQCGYEMDLNSSETESEADLEAEELTMSHKTTQKSKYLCQLCQNKYPRKYQLYEHQRVSHSWSEAPHVCGRCDARFVSLQVLRHHNESQCKNAQKRFLCHKCPLRFRWKHNLKAHVRDHRITNQTFECNECKRVFDKKKSLTVHMLSVHVDESKLIPCQWCSRKFYRHDYLVKHLKRHGINEQDIPLAETLIDATSKPNGPKNITCKICNLQFEHIVDLRAHIQLELKLALSLHQNYKSLENYSITNDSGFELQLDDSETEDEGTTMPYKTPSLYVCELCQVQCRRKYEMTQHQRTMHRFDKMPYDCERCIFKCVSKNIMDHHKQVQCFSEQKKHVCNKCGFKFMWPENLEKHVQIQHGGWQQEALENSAQKPKSDMKSEVSEVGVQLLQCPHCDRTYQMKSRLNNHIRDVHVNGDRKRKEAIKKFLCSLCGRETHSAASLVTHMRRHTGEKPFKCDLCEMAFPRHSEMVSHRRMHTGEKPFHCTVCGKDFARSDKLKRHMLTHSGLKPHKCTYCEKSYRQSKDLKLHLQQHTGECPFICATCGERFIQRSSLEKHRMMRRHFDEVDDRTTPAAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00337738;
90% Identity: iTF_00336122;
80% Identity: -