Basic Information

Insect: Chymomyza amoena
Gene Symbol: -
Assembly: GCA_037043745.1
Location: JBAMAX010004390.1:206527-209772[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0053 0.5 11.4 3.5 1 19 216 234 216 239 0.91

2 17 8.4e-06 0.00078 20.2 0.5 1 23 246 268 246 268 0.98

3 17 0.0011 0.11 13.5 0.5 2 23 300 321 299 321 0.95

4 17 0.00024 0.022 15.6 1.9 1 23 411 434 411 434 0.98

5 17 0.46 42 5.3 0.4 1 19 441 459 441 462 0.92

6 17 0.007 0.65 11.0 4.2 1 23 471 493 471 493 0.95

7 17 4.3e-06 0.0004 21.1 0.8 1 23 500 523 500 523 0.97

8 17 0.00042 0.039 14.8 2.4 2 23 531 552 530 552 0.96

9 17 0.0067 0.62 11.1 0.1 2 21 579 598 578 599 0.94

10 17 0.0019 0.18 12.8 2.5 1 23 649 672 649 672 0.98

11 17 0.013 1.2 10.1 0.6 1 23 709 732 709 732 0.96

12 17 0.00014 0.013 16.4 1.6 2 23 764 786 763 786 0.95

13 17 0.00085 0.079 13.9 0.9 1 23 800 822 800 822 0.95

14 17 0.00019 0.018 15.9 1.2 1 23 828 850 828 850 0.99

15 17 3.5e-07 3.3e-05 24.5 2.6 1 23 856 878 856 878 0.98

16 17 4.8e-05 0.0045 17.8 4.7 1 23 884 906 884 906 0.97

17 17 4.3e-05 0.004 18.0 0.6 1 23 912 936 912 936 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0053	0.5	11.4	3.5	1	19	216	234	216	239	0.91
2	17	8.4e-06	0.00078	20.2	0.5	1	23	246	268	246	268	0.98
3	17	0.0011	0.11	13.5	0.5	2	23	300	321	299	321	0.95
4	17	0.00024	0.022	15.6	1.9	1	23	411	434	411	434	0.98
5	17	0.46	42	5.3	0.4	1	19	441	459	441	462	0.92
6	17	0.007	0.65	11.0	4.2	1	23	471	493	471	493	0.95
7	17	4.3e-06	0.0004	21.1	0.8	1	23	500	523	500	523	0.97
8	17	0.00042	0.039	14.8	2.4	2	23	531	552	530	552	0.96
9	17	0.0067	0.62	11.1	0.1	2	21	579	598	578	599	0.94
10	17	0.0019	0.18	12.8	2.5	1	23	649	672	649	672	0.98
11	17	0.013	1.2	10.1	0.6	1	23	709	732	709	732	0.96
12	17	0.00014	0.013	16.4	1.6	2	23	764	786	763	786	0.95
13	17	0.00085	0.079	13.9	0.9	1	23	800	822	800	822	0.95
14	17	0.00019	0.018	15.9	1.2	1	23	828	850	828	850	0.99
15	17	3.5e-07	3.3e-05	24.5	2.6	1	23	856	878	856	878	0.98
16	17	4.8e-05	0.0045	17.8	4.7	1	23	884	906	884	906	0.97
17	17	4.3e-05	0.004	18.0	0.6	1	23	912	936	912	936	0.90

Sequence Information

Coding Sequence: atgaAACTTCCCATTATTTGCCGCACTTGCGATGCAAGGAACAGCGACAATTTATACAAACTTGCTACGCCCACAAAAAAATATCCTGAAAAAATGCTCTCAGATTTATTGGCTGAATTGACCGAAATTGATctAAATGGATCCTTTGCACAAAAACTGCCGCAATCACTCTGTAGTAGTTgcacaagaaaattaataagtgCATATTACTTCGTCAAGCAAGCTCGCAATGCCAACGAAGTATTAATGAACCACTTGTTAAATGGCCAGACAAGTGCTCCTCCAGATTGCTTACAAGAGCTCCCAATGGAGTTATGCGCCGAACAGCATGttgaaatcaaaatggaaaCAAAAGATGATGAAGTAGACAATGTCATTACCTGCTCCGATCTGCCTGAGTTGTCACTGGAGGATTTGGATATTCTAGAAGAAATCAAAGCAGATAGTGTAAAACCAATGAACGACCCATTAATATCACCAGAAGCGCTCAAGCAAGAGCATGATACGGATGCATCGAACACAGGCTTTGATGCGAATGATTTTCCTAGCCAGGACTACGAGTGTGACGATTCACTCGATGATTTGCCATTACAACAGCGCGCTCACAAGTGGAAGCAAGACAAGAAGCCGAGCGGTAACAAAAGATATAACTGTTTTGAATGCTCTAGAAGTTTTAGCAGAGCGGTTTACCTAAAACAACATTGCGCACGCACACATAAACCCAAGTCCGATTGGTTTTCCTGCACGCTATGCGTACGCAAGTTCAGTCGAAGTGATGCGCTTCAAGCTCATCTTAAGGTTCATAGAGACCCTAAACGTTCAGCGAATCTCAATGATCGGAAACGAGCCAAGGACATAGATTTAAATCTCTGCAAGCCACATGGCTACAAGCTTATTGAATGCATGATTTGTCAAACCAAATTCGATAAGATGTCACAATTACGACAACACATGGAGGATCACCCCGACATAGATAATTTTGACGACCAGCAAAAGCTGAATGCCAATGATCTTGCGGAACTGTTGTATCCAGATTTAAAAAACGTAACAGAGGAGCATTTGAAAACTCTTATACGAAAGGAGTTGGCATCTGGTGCTTATCAACGATTTTATTCAATAACCAGTCAGTGTGGTTATGAAATGGACTTAAACAGCTCGGAAACTGAAAGCGAAGCAGATTTGGAGACCGAAGAACTCACAATGAGCcacaaaacaacacaaaaatcaaaatattcatgTCAGCTATGTCAGAACAAATTCCCGCGCAAGTATCAGTTGTATGAACATCAACGTGTGTCTCACTCGTGGTCGGAGGCTCCACACGTATGCGGTCGGTGTGATGCACGCTTCGTAAGCCTGCAAGTGCTGCGGCATCACAATGAATCTCAGTGCAAGAATGCCCAAAAGCGCTTTCTCTGTCATAAATGTCCGTTGAGATTTCGCTGGAAACATAACCTTAAGGCTCACGTTCGAGATCATCGCATCACAAACCAAACCTTTGAGTGTAATGAATGCAAGCGTGTTTTTGACAAGAAAAAGTCACTCACTGTGCATATGCTTAGTGTTCATGTAGACGAATCAAAGCTTATCCCTTGTCAATGGTGCAGCCGAAAGTTTTATCGTCATGACTACTTGGTCAAGCATCTCAAGCGTCACGGCATCAATGAGCAGGACATACCATTGGCCGAGACTCTCATAGACGCCACATCGAAACCTAATGGCACAAAGAACATTACTTGCAAGATTTGCAATttacaatttgagcacattgtTGATTTGCGAGCCCATATTCAACTAGAATTGAAGTTGGCTCTTTCGCTTCATCAAAACTACAAATCGTTGGAAAATTACTCCATAACTAATGATTCGGGCTTTGAGCTCCAACTGGATGATTCAGAAACGGAAGATGAAGGCACCACCATGCCTTATAAAACCCCTTCGTTATACATTTGCGAGCTGTGTCAAGTACAATGTCGGCGCAAGTATGAAATGATACAACATCAACGTACTATGCATCGATTCGATAAAATGCCTTATGATTGCGAGCGTTGTATATTCAAGTGTGTTTCCAAGaatatAATGGACCATCACAAGCAAGTGCAGTGCTTTAGTGAGCAAAAGAAACACGTGTGCAACAAATGTGGCTTTAAATATATGTGGCCTGAAAATCTGGAAAAACATGTGCAAATCCAACATGGTGGCTGGCAACAAGAAGGTCTTGAAAACACCTCACAGAAGccaaaatctgatttgaaaagCGAAGTGCCTGAAGTTGGAGTGCAATTACTTCAATGTCCGCACTGTGATCGAACCTATCAAATGAAGTCGCGTCTTAACAATCACATACGGGATGTTCATGTCAATGGAGATCGTAAGCGCAAAGAGGCCATCAAGAAGTTCTTGTGTTCGTTATGTGGAAGAGAGACGCACTCGGCGGCTAGCTTAGTTACACACATGCGGCGGCATACGGGCGAAAAACCTTTTAAATGTGATTTGTGTGAGATGGCATTTCCTAGACATTCTGAAATGGTGTCCCATAGACGCATGCATACTGGTGAAAAACCATTCCATTGTACAGTTTGTGGAAAGGACTTTGCACGTTCAGATAAGCTTAAACGGCATATGCTAACGCACAGTGGTTTGAAACCACATAAATGCACCTACTGTGAAAAGAGCTATCGACAGTCTAAGGACTTAAAATTGCACTTGCAACAGCATACCGGAGAGTGTCCATTTATATGTGCCACCTGTGGAGAACGTTTTATACAAAGAAGCTCATTGGAGAAACATCGCATGATGCGGCGGCATTTTGATGAAGTGGATGATAGAACCACGCCAGCTGCCAAATAA
Protein Sequence: MKLPIICRTCDARNSDNLYKLATPTKKYPEKMLSDLLAELTEIDLNGSFAQKLPQSLCSSCTRKLISAYYFVKQARNANEVLMNHLLNGQTSAPPDCLQELPMELCAEQHVEIKMETKDDEVDNVITCSDLPELSLEDLDILEEIKADSVKPMNDPLISPEALKQEHDTDASNTGFDANDFPSQDYECDDSLDDLPLQQRAHKWKQDKKPSGNKRYNCFECSRSFSRAVYLKQHCARTHKPKSDWFSCTLCVRKFSRSDALQAHLKVHRDPKRSANLNDRKRAKDIDLNLCKPHGYKLIECMICQTKFDKMSQLRQHMEDHPDIDNFDDQQKLNANDLAELLYPDLKNVTEEHLKTLIRKELASGAYQRFYSITSQCGYEMDLNSSETESEADLETEELTMSHKTTQKSKYSCQLCQNKFPRKYQLYEHQRVSHSWSEAPHVCGRCDARFVSLQVLRHHNESQCKNAQKRFLCHKCPLRFRWKHNLKAHVRDHRITNQTFECNECKRVFDKKKSLTVHMLSVHVDESKLIPCQWCSRKFYRHDYLVKHLKRHGINEQDIPLAETLIDATSKPNGTKNITCKICNLQFEHIVDLRAHIQLELKLALSLHQNYKSLENYSITNDSGFELQLDDSETEDEGTTMPYKTPSLYICELCQVQCRRKYEMIQHQRTMHRFDKMPYDCERCIFKCVSKNIMDHHKQVQCFSEQKKHVCNKCGFKYMWPENLEKHVQIQHGGWQQEGLENTSQKPKSDLKSEVPEVGVQLLQCPHCDRTYQMKSRLNNHIRDVHVNGDRKRKEAIKKFLCSLCGRETHSAASLVTHMRRHTGEKPFKCDLCEMAFPRHSEMVSHRRMHTGEKPFHCTVCGKDFARSDKLKRHMLTHSGLKPHKCTYCEKSYRQSKDLKLHLQQHTGECPFICATCGERFIQRSSLEKHRMMRRHFDEVDDRTTPAAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00337738;
90% Identity: iTF_00337738; iTF_00339317; iTF_00338558;
80% Identity: -