Cfus019829.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chymomyza fuscimana
Gene Symbol
-
Assembly
GCA_949987675.1
Location
OX465090.1:30900979-30905779[+]

Transcription Factor Domain

TF Family
MBD
Domain
MBD domain
PFAM
PF01429
TF Group
Unclassified Structure
Description
The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.7e-14 2e-10 40.7 0.0 8 72 286 346 280 349 0.85

Sequence Information

Coding Sequence
ATGAGCTCGTCTGAAATGCCTGGCTCATCCAAAAAGTCACGCTCCAGAAAAAAGTCCGGTAAATCATCGCCACGTAGTGCAGATTCCATGACCGCTTCTTCATCTTCGTTAAACGAAACACCAGAGAAGCAGGAAAAGCTTGACAGTGTCGAATCAACTGCGCAAACATTGCAGACAGAGGCCGAGAATCTTAATGGCAGCGAACATACAAATGGTCCTCGCAagaccaaaaagaaaaaaactaaaaaaagtaaaagacgTCGTGATTCCAAGGACACATTTCTTATTGGCTTTTCAGGCGCCTTTCCAAAAGCGTTGTCTACTCACAGTATGGAAAGCAATTCTGATGCCGAACACCAGAGCCCCGCCGAGCTGAAGGCACTTAGCTCAACAGGCCTTCGCGTCTTTCCCAGAGAGGAGGAGCACCTGCAACCGTCGCTGCCGACTACAGACAACAACAATTCAATTTCAACAGAATCATTAAACTTACCTAGTGAATCGCAACCACCACAAACCACCTTGGCTGACCAGGATGtttcaaaaacgtttttaagcAGCAACAGAATCGGACGCAAACGTACCGCTGCAGCGTGTAGCATTGGCAGCAGCGAcgaaattgaaaaacttaagAAATCCCTCAAGCGCTCAGATTATCGTTCGAAATCGATAAGTGCGCCGTTTGATCACAAACTTCAGCGACGCTCACTGCGCACTCGCAGCATGTGCGTTCTACTAAACTTGGATGTGGAACAGGAGCAACTAGCAGCTGATGCCATCAAGCCGACGCCCAGTAATACACGTCGCCGTCTTTACTCGAGCGGCATGCCTAAAATTTCGCCTACGGATGAGCTCTATCGAAAGCCCTTTGAATATGGCTGGAAGCGTGAACTTGTGCTACGTAATGCCCGAAAAGGAGCAGCTCCACGTGGCGATGTTTTCTTTATTGCTCCAAATGGAAAAAAGCTGCGCTCACGCGACGACATAATTCCTCTTCTAAAAGGGGACTTAACCATCGACAATTTTTGCTTTCAACGCGAACCTGTGGGCGCTGCGCCCGAGTTTGAAACAGTGCGAGTCGCTGTTCCCAATTCAAATAGACGCAGGTCTTTGGCACAATTGCAGAGAGAGGACGCGAGTTCTTCAACTCCGCCGCTGTTGGTATCAGGCAAGCGTGTATCCAAGCCTAAAGCACCCAAAGGTGCAAGTCCACCGCCTGTGGGCTGGACCCCAACTATGGCAGTTAAGGGCAATGCGCGCGTATTGGCTGCTAGCAATGGAAATAGTAGTGGCGGATCGGGCAGCACACGTAAGCGCGGCACACTGATGAAAGCTTCGGCCAGTGCAGCCGCAGCTATTGCACAGCGAACGAGTGGTGCTCCTAAGCTGCCCCAGCCGGCGGCATCAACAAGCGTCGCCGCCAAAAGCAGCAACGTCAGCGCTCAGGCCCTTATCTGTCTTCGCTGCCAAGCCAAAATCGAGGGGCATAATGCTTACAAGTTTGCGACCTCGGACAAGGAGAGTACCTGCCATATTTGTGTGCGCTGTTTGAAGAGTAGCAACGAATCCTCTCGCACTAAAGAAGCACCTGAAGTACAACCCGTTCTTTCGGCCACAAATGAAACCATCAACACTAATAATGCTGATGTTAATACCAATGAAGCTGTGCACACCACAGCTGATGATGATGCGGATGAAGAGCAGGATTATGGTGGCTCATTGGAAAAAGCCGAAGAGATTGAATTGCCTGGGCAACTGCCACCGGCGCAGTTACTTAGCAAGAATGCCGCTGGTGCCGCAAAGCGTCTTTCCAGGATTCAGGATATCACAGTCATAGGTGGACGTAAATATCTAACCGTTGCTGAAGATCCACCGCTTCCACGAACGCAAGTggAGCACCGCAAATTACGAATCGAAGCTCAAAAAAAGTACTCTTTCAAACGATCGTGGCATAAAGAGACTCGGAAGAACTTTGCTGAATTAATGAATGATGCCTCCACTGGCTGCCAAGTACTCAAAGCCGTAATGAAAACCTTGCCGATCGGTGTACTATGTAAGATGGCACAGGTCTGCAATTTATGGCACTTGGTCTCACATGACACTGGAGTCTGGCACAGTGTTTCGCTAAAGGATACCCATATCACAAACTGGGTATTGTTTCTACGTTATTTGGCACGCCAGAACACTTACAACCTGGATATGACTGGGGTCTCCATGTCATCACCATCGCTTCGCATGACAGGTGACTTGCGTGTGCTCAAGTCATTGCGCACACTGCGCACCGATCCGTGTACAGCCGAGTTTGTGCAGTCCGTAATACGTATGGTGCCACATTTGTGCGAGCTATACGCTACAATCACAAGTCCTGAGCTCAGTCTGGCAAATTGTCACAAGATGCATGATTTGCGCGTATTGCATATTGAAATGCAAGATAAACAGAGCAAAATGACACCCTTTACGCCATTGGCGGCACTGACGCAGCTCACCGAGCTAAGTGTGCGCGGTATTGTGCAGATGGAAGGAATGGATGTGAAGTCTTTGCAAAGCTTGGAGAATCTGCAAAGTCTGGTGCTTGGCTCTTGCATCGGTATGGATACTACCGAGTTTGGAGAACAGGTGCTGCCAAAACTTGTGCGTTTAAAGCGTCTACGAATAGAAAATCGACAAGCGTTTCAGACTAGTTTCGATATTGGCCCTATAATGCTTGGCGCATCGCTTGCCAATAGTGTGGAACGCCTAGAGCTTATAAATGTTGACTTGGACGGCAGTTTTAGTAGTCAGCTTGCAGCCTGTAAATCGATACGCCGTCTACTGCTAGTTCCTAGTTATGTCAGCAATGCGGCTAAGACAACCAACTCAATAATGCAGGCCATCAGTGACTGTAAGGATAGCTTAAGTACCTTTAAGCTGGGCGTGACGCAAGAGCTGCTACGCATGACCGCCGCTTTATGTTCCAGTAATGAAGATCAGacttgtatacctgtggtgcgTCCAGTGCCGGGCCTGATGTTAGATGATAGCCTCAACGATATTAACGATTCTACAAACAATACGCCGCACGAGTGGGCCTTTTTACCTGTGGATCGCCTTGAGTCCATACTTCAGAATATGATGCCACAGGCGACGTTAACAGTGGCTAAAATTCCACAAAGCCAAACCACCTTTTTACAGTTCTAG
Protein Sequence
MSSSEMPGSSKKSRSRKKSGKSSPRSADSMTASSSSLNETPEKQEKLDSVESTAQTLQTEAENLNGSEHTNGPRKTKKKKTKKSKRRRDSKDTFLIGFSGAFPKALSTHSMESNSDAEHQSPAELKALSSTGLRVFPREEEHLQPSLPTTDNNNSISTESLNLPSESQPPQTTLADQDVSKTFLSSNRIGRKRTAAACSIGSSDEIEKLKKSLKRSDYRSKSISAPFDHKLQRRSLRTRSMCVLLNLDVEQEQLAADAIKPTPSNTRRRLYSSGMPKISPTDELYRKPFEYGWKRELVLRNARKGAAPRGDVFFIAPNGKKLRSRDDIIPLLKGDLTIDNFCFQREPVGAAPEFETVRVAVPNSNRRRSLAQLQREDASSSTPPLLVSGKRVSKPKAPKGASPPPVGWTPTMAVKGNARVLAASNGNSSGGSGSTRKRGTLMKASASAAAAIAQRTSGAPKLPQPAASTSVAAKSSNVSAQALICLRCQAKIEGHNAYKFATSDKESTCHICVRCLKSSNESSRTKEAPEVQPVLSATNETINTNNADVNTNEAVHTTADDDADEEQDYGGSLEKAEEIELPGQLPPAQLLSKNAAGAAKRLSRIQDITVIGGRKYLTVAEDPPLPRTQVEHRKLRIEAQKKYSFKRSWHKETRKNFAELMNDASTGCQVLKAVMKTLPIGVLCKMAQVCNLWHLVSHDTGVWHSVSLKDTHITNWVLFLRYLARQNTYNLDMTGVSMSSPSLRMTGDLRVLKSLRTLRTDPCTAEFVQSVIRMVPHLCELYATITSPELSLANCHKMHDLRVLHIEMQDKQSKMTPFTPLAALTQLTELSVRGIVQMEGMDVKSLQSLENLQSLVLGSCIGMDTTEFGEQVLPKLVRLKRLRIENRQAFQTSFDIGPIMLGASLANSVERLELINVDLDGSFSSQLAACKSIRRLLLVPSYVSNAAKTTNSIMQAISDCKDSLSTFKLGVTQELLRMTAALCSSNEDQTCIPVVRPVPGLMLDDSLNDINDSTNNTPHEWAFLPVDRLESILQNMMPQATLTVAKIPQSQTTFLQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00337520; iTF_00335895;
90% Identity
iTF_00337520;
80% Identity
-