Basic Information

Insect: Chymomyza fuscimana
Gene Symbol: rfx7.L
Assembly: GCA_949987675.1
Location: OX465088.1:128637647-128642386[+]

Transcription Factor Domain

TF Family: RFX
Domain: RFX domain
PFAM: PF02257
TF Group: Basic Domians group
Description: RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 1.3e-32 1.1e-28 100.1 0.1 3 77 315 389 313 391 0.97

2 2 1.2 1.1e+04 -2.4 0.0 20 67 578 628 573 630 0.67

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	1.3e-32	1.1e-28	100.1	0.1	3	77	315	389	313	391	0.97
2	2	1.2	1.1e+04	-2.4	0.0	20	67	578	628	573	630	0.67

Sequence Information

Coding Sequence: ATGTCCGAGAAGCATGGACAAATTggtgcacagtggtcgaaatcaGCAGCAGGTGCGGCGTCTACAACAACACCGTCGCTCCAAAACCCACAACAAATTGCTATCACTGGCAGCCCCTATATAAATTGCAATATTCCGGGCATACATGTGCAAGTTTCGCACCCGGAAATACCATATACATCTGGACGCTTTCAGGCGCCACCTATTCATGGTACCGCAGCATCGCTAACTGCTGTTGCAAGTTCTGCCCCACCACAGCAACAACTTTCGCCCACTGTGCTCGCCACGCCCACGCATACAAATGTACCTGTACCTGCTCCCAGCGGTTTTGTGCCGCCTACTTTTCCAAATACAGCCAGCGCTACTTCTGTGCTAACTCCCAATCCCTTTGCCAGCGGCAATGTGGGCGGAGGTTTGCCCTTTGCAAATGTATTTGGTTTTAATCAAGCACAACAATTAGAATTGGGAAAAATTATGAATGCTATGAATGCAGCCAATGCAAACGCTGCTGCTGTCTCCCCAAATACAACTGGCAACCATGCCTTGACCAGCATAGCTGGACAAAATACTGCCGCACTTCAAAGACATCACAGTGACAATTCCTGTGGCAGTACTACGGTTGTTAGCGGCACTACCAGTGGCGTAATCAATTCCACTATTGCTGAAAATGTTATGAATGCTTTAGCCAGCTCTCCGGCGCAATTACCCGGGGCGTTGTTGCCTGCCGGTACAAATGAAGAGAAAATGCGGCGCGTGCATGAAGTCATTGAAGCCAGTCTGGACGAAAATGCTAAATTGCAAATCACCCAAATACTGGAACGTGTAGCTACCTTAAAGCCCGTAGAGAAGCTTTTTCTTTATCTACGTCTACCTGGCGAAAGTGCCGAAACGGATCCTTTGAGGCAACCTCAAAATCCGCTTGGAACGCGCTCTGAAATAAACCATACTATTAATTGGGTGCGCTCACATTTGGAACACGATGCGCAGGTTTCCATACCAAAGCAGGACGTTTACAATGATTATATCGCCTACTGCGAACGTTTAAACATCAAACCTCTCTCCACAGCCGATTTTGGCAAAGTAATGAAACAAGTGTTTCCCGGCGTGCGTCCACGTCGTTTAGGCACGCGAGGCAATTCTCGCTATTGTTATGCGGCCATGCGCAAGGCAACAAAACTAACACCGCCCCAGTTGCCACAGTTGTCCAAAGATGACAAGTCGATAGTTAAGGAGGAGATTGATGCCAATTTGGAATCAAACAGCCACGGCATCAGCAGTGGTATTCATGCGGACGGTGATTCTTGGAATGTTGTGAAAAGCTGGGCAGAAAAGTTGCTTAACATTAAAGTGGGTGATATTAAAGATTTGGCTACACGCATCAAAGGAAACAATGGTCCAAATGCTGGTAATATGTCGCATAATGTCAATGCCATGGGACGCTTGGGAACAAAGAAATACACGCCCAGGGAACCAAAGGAAAAGCGTATGTTGGCGGACATGGGACCATTAAAAAAACGACGTAAGAAGAAACGCAAAGGATCCTCATCAAGCGAGTCCAGCTGTAATCAGCTTACTCCAGCACAAGATGCCAACAGCAGTCAAGAGGCGACCGCTTTACAATCAGCTGTCTTAGAAGAGGatcaaaaatcgctgaaactGGTCAAAATAAAGCAGGAGATTATAGACTCGCCCGTGCAACAATCGCAAACGCCTACATTAAATGTGGCACCAGTGGCGCAACATGCTCTGTACAGCGATACTTATTTAATGGCAGCacaacatcagcagcaacaaatatTGCCCATGAATTTGGCCACCGAGCAACGGAGCGTGATGGCCAAGATGCCGACACAGAGCATTAATAGCCTGCAAACGCGCGGGGCAGTGCGCAATCTGACATCTAAAATAATGGAGCTTACCCCAGCCACTCAAGCGGCATTGGCACTAGAGGAAATGCAAGTGCCGCCTGGCTCGACTTCGCCTTCTACTGTTATCATAAAGAATGAAGTAGAGGATTACAATACATCcaatatattttgcaaaaaagtaCTGAAGGCACAGCAAACCAAAGGCTTTTGGGTGAATTCACCCAGTGGCGCTACCGTTAGTGGTTCGACCTTACAGGTACCGCCTCTAATAACCACAACGGCTGCCACACCTCCACCAGGCGGTACACTTTTAGTGGCACCTTCCAACACAACGTTAGTTGTGTCCGGCAACAGTCCTGTGCCCCCTGGTACGCAGCGTACCATGGGCCCACCGGCGCAAATGAACAGTGCCAGTTCGGTGAGTCCTTCGAGCAGCTTAGAAATAACGCCCAAAGTGGCATCACGTAATATGGCATTGCTGAGAGCGAAGCGCATATTGGCAGCAGAGAATGCGGCTGCTGCAGCCGTGGACTCGGACTTGCCGGAGAACTTAGGCTTACCGCGTGAACGTGTAATAAGCATATGTAATATGGATAAACATGAGTTGGATGATTACTTTTTGCCTGGGGAGGAGGAAAACTCTGAGGGACCCGATACCGAGTTGCTTCAATATTTTCCGATGGGAGACGCTGAGGAAAAACAACTGAATTCCTTAGATGCTGCAGTAGAGAATAGAAATCCACAATCAATGCAATTGACTGCACTGACAGCTagcgcaacaacagcaacaacgaaaGCCAATgaagttgcaacaacaaaaactgcaacaacGCCTTTAATTGGCTTTAAAGCAATGCCACAGCAGGCATCATCATTGCGCAAAACAGGTCCTATGGCAATGCCCACTGGTACGAGCCTGTCCACGCTGTTGACTAATGTCAGccatgcaacaacagcaacaacaacagccaatgTTGTGGGTTCTGCCTCAGCGTCTCTGGCTCTAATGTCACAAAAGCATCAACAGCTACTACAACGACAAAGGCATAAACAAGCGCCTACAACGAACAATAACAAACGTAAAATTAGTCTAACTAATGACTCCAGCAATGGCAATAACAAGAACTGCATATTTTTGCCCATATCGCCGAATATCAATGGAGCGACTAATAGCAacatgaacaacaacaacaacgtgagcaacaataCGCCTATAAACACAGCATCATCAGGTGCAGCCAACTGCTTCGCTAGTCCGGGCATAACGCGCATGCGCCAGCGCTCTAATTTATTGACCAAGCAGCAATCGCTAGACTTTGATGCAGACGGTAACGGTGATCCCATGATTGGCGCTAATAGAAGACGCCGCAACTATGTCTATAGCTATCCAATTAGTACTTCTGCCTCGGCCCCGCCCAGTCCTTCCGTGCTGCAGCAGTGCATGGGCGCCAACTGGTCATTCAGGGGCGCCGTAAATAGCACCACAACCAGCAATTTTAATGAACAGAACAATGTAGCACTGCTAGCCGATCAAAACTCAATGGATTTGGAGACTAGTCTAGCCCTGGCCAGCGGTGATATGGACATACAGCTAACACCaataaacgaaacgcaacgCTCGCAGTCCGTACCACTATCGCAGTTGCAGCGTAACGCTACGCCTACTTTTCATAGACATCTGAACAATGCCAGCTTTCAGGCCATGTCGAGCTCCAACTATATCAGCGCGGAAACTAATGTCGTAAGCGATGCGCTTTATTCCGAAAATAGCAACAGTCAGCAGCTGGAAGTTAGCGATGTAGTCCCAGAAGGTTTACTTTATGAAGTTGACGTAAGTGCTCTAATATCGCCCAGCTTTAACAAGTTTAGCAGCATTGTGCAGCAGCATTCACAGCAAACAGCAACCACATGCAGCTCCTCGGCAGGCTCCTCCTCAGGCTATAGCAGTGGCGGAGGCAGCGCAGCACCTAACTTTGGCGGCAGCATAATTTCTAGATCAGTGCCATCCACGCCGTTGCCACATCATCAGCTTAATCATTTTGGAAGCAATGCAAATGGTAACAGTGCAGTCGGAACTGGTACTGGTGACAACAATATATTCTTTAATCGTCGCAATGATGACTTTAATATATCGCCTGTACTATCCTGGGGCTCAGCGGGCGCCAATCCTACATATGGACATCAATATGGTGCGCGCAATGCATTAGACATATCGAAATCAATGCCAACTACGCCCATAACAACGCCTTGCTTTCGTTATAGTCCCACGGAACTGCATCGCGATTTTTTAATCAATGGCAATACCATTGATAGCATTCCCTCGTCAGCCTTTGGTGGGCCTGGTACTGATAGCCTGGGCGTAGACACACTAATCGATGATAGTGCACCGACCAGCACCGATGTGGAGGCCATGATTGGCGCTACCGATATACTCGATAATTTGTAG
Protein Sequence: MSEKHGQIGAQWSKSAAGAASTTTPSLQNPQQIAITGSPYINCNIPGIHVQVSHPEIPYTSGRFQAPPIHGTAASLTAVASSAPPQQQLSPTVLATPTHTNVPVPAPSGFVPPTFPNTASATSVLTPNPFASGNVGGGLPFANVFGFNQAQQLELGKIMNAMNAANANAAAVSPNTTGNHALTSIAGQNTAALQRHHSDNSCGSTTVVSGTTSGVINSTIAENVMNALASSPAQLPGALLPAGTNEEKMRRVHEVIEASLDENAKLQITQILERVATLKPVEKLFLYLRLPGESAETDPLRQPQNPLGTRSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCERLNIKPLSTADFGKVMKQVFPGVRPRRLGTRGNSRYCYAAMRKATKLTPPQLPQLSKDDKSIVKEEIDANLESNSHGISSGIHADGDSWNVVKSWAEKLLNIKVGDIKDLATRIKGNNGPNAGNMSHNVNAMGRLGTKKYTPREPKEKRMLADMGPLKKRRKKKRKGSSSSESSCNQLTPAQDANSSQEATALQSAVLEEDQKSLKLVKIKQEIIDSPVQQSQTPTLNVAPVAQHALYSDTYLMAAQHQQQQILPMNLATEQRSVMAKMPTQSINSLQTRGAVRNLTSKIMELTPATQAALALEEMQVPPGSTSPSTVIIKNEVEDYNTSNIFCKKVLKAQQTKGFWVNSPSGATVSGSTLQVPPLITTTAATPPPGGTLLVAPSNTTLVVSGNSPVPPGTQRTMGPPAQMNSASSVSPSSSLEITPKVASRNMALLRAKRILAAENAAAAAVDSDLPENLGLPRERVISICNMDKHELDDYFLPGEEENSEGPDTELLQYFPMGDAEEKQLNSLDAAVENRNPQSMQLTALTASATTATTKANEVATTKTATTPLIGFKAMPQQASSLRKTGPMAMPTGTSLSTLLTNVSHATTATTTANVVGSASASLALMSQKHQQLLQRQRHKQAPTTNNNKRKISLTNDSSNGNNKNCIFLPISPNINGATNSNMNNNNNVSNNTPINTASSGAANCFASPGITRMRQRSNLLTKQQSLDFDADGNGDPMIGANRRRRNYVYSYPISTSASAPPSPSVLQQCMGANWSFRGAVNSTTTSNFNEQNNVALLADQNSMDLETSLALASGDMDIQLTPINETQRSQSVPLSQLQRNATPTFHRHLNNASFQAMSSSNYISAETNVVSDALYSENSNSQQLEVSDVVPEGLLYEVDVSALISPSFNKFSSIVQQHSQQTATTCSSSAGSSSGYSSGGGSAAPNFGGSIISRSVPSTPLPHHQLNHFGSNANGNSAVGTGTGDNNIFFNRRNDDFNISPVLSWGSAGANPTYGHQYGARNALDISKSMPTTPITTPCFRYSPTELHRDFLINGNTIDSIPSSAFGGPGTDSLGVDTLIDDSAPTSTDVEAMIGATDILDNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00337253;
90% Identity: iTF_00337253;
80% Identity: -