Basic Information

Insect: Chymomyza costata
Gene Symbol: stc
Assembly: GCA_018150985.1
Location: JAECWU010000003.1:4671934-4676037[-]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2 1.9e+04 -4.1 1.6 15 19 392 396 391 396 0.81

2 15 0.048 4.4e+02 1.1 2.2 4 11 425 432 424 433 0.91

3 15 9.5e-07 0.0089 16.1 14.5 4 19 439 454 437 454 0.91

4 15 3.4e-06 0.032 14.3 13.2 1 19 490 508 484 508 0.86

5 15 1.8 1.7e+04 -4.0 1.4 7 13 512 518 512 519 0.72

6 15 1.5 1.4e+04 -3.7 0.9 6 10 538 542 537 542 0.83

7 15 1.2e-08 0.00011 22.2 12.8 1 19 548 566 548 566 0.98

8 15 2.9e-05 0.27 11.4 15.7 4 18 614 628 607 629 0.86

9 15 0.064 5.9e+02 0.7 13.2 1 11 669 679 669 691 0.79

10 15 2.8e-10 2.6e-06 27.4 15.1 1 18 696 713 696 714 0.97

11 15 1.4 1.3e+04 -3.7 1.5 6 10 743 747 742 748 0.61

12 15 2 1.9e+04 -8.9 12.1 4 18 755 770 751 771 0.76

13 15 2.5e-06 0.024 14.7 12.0 1 17 807 823 807 829 0.86

14 15 1.5e-05 0.14 12.3 13.2 2 19 840 858 839 858 0.91

15 15 1.2 1.1e+04 -3.4 0.1 8 12 874 878 873 878 0.76

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2	1.9e+04	-4.1	1.6	15	19	392	396	391	396	0.81
2	15	0.048	4.4e+02	1.1	2.2	4	11	425	432	424	433	0.91
3	15	9.5e-07	0.0089	16.1	14.5	4	19	439	454	437	454	0.91
4	15	3.4e-06	0.032	14.3	13.2	1	19	490	508	484	508	0.86
5	15	1.8	1.7e+04	-4.0	1.4	7	13	512	518	512	519	0.72
6	15	1.5	1.4e+04	-3.7	0.9	6	10	538	542	537	542	0.83
7	15	1.2e-08	0.00011	22.2	12.8	1	19	548	566	548	566	0.98
8	15	2.9e-05	0.27	11.4	15.7	4	18	614	628	607	629	0.86
9	15	0.064	5.9e+02	0.7	13.2	1	11	669	679	669	691	0.79
10	15	2.8e-10	2.6e-06	27.4	15.1	1	18	696	713	696	714	0.97
11	15	1.4	1.3e+04	-3.7	1.5	6	10	743	747	742	748	0.61
12	15	2	1.9e+04	-8.9	12.1	4	18	755	770	751	771	0.76
13	15	2.5e-06	0.024	14.7	12.0	1	17	807	823	807	829	0.86
14	15	1.5e-05	0.14	12.3	13.2	2	19	840	858	839	858	0.91
15	15	1.2	1.1e+04	-3.4	0.1	8	12	874	878	873	878	0.76

Sequence Information

Coding Sequence: ATGGCAGAGTATTGGCAGCAGCAGTCAAATGGTGGAAGTAGCTTGTTTCCACCTGCTGATGAATCATACAATGCAAGCGTGCAGAGCAATGACGATCTAATTGTTAATAGTAACAACAACTATGTAAATTTCAATCAATTCATCATGCAACATAATTTGAGTTCAAGTAATCTACCATCAGCGACAGTTGGTGATGGTATGGGTACTGTAGGCGGCGGAGGCGCTTTTGGCTTGGCATCAAGCGTGTCTCAAACTCCAAGGTCTAGTGGATTAAGCAGCATTTATGGCAACTTTTCGTCTCAGCCGTTCATTGAATATGGAGATGGTGATAATCCAGCCACCTCAAACTACTCGGGCACTACGTTTACCAACTTATACACACCATTTAATCCCAATCCCTTTGCCGCCAGCTTTGATTTTAATGCATCTAAGTTACATGCAAATGCCCCAGAATTTGTACCGAATTTTGCCAAAATGAGCTTAAACGCGTCTACAGGAGTGAATGGTAACATGCCCACAGAAATGAATGCCAATGGCAATAACACTGCCAGCTTAGACGAAAACAGTGACCAAGTTCAATTGTCTGCAGCGTCTACTACAAAAACTGCCGGGCCATCCATTATGGGCATTAATGTCCATACACAGCAGCACCAACGTGGCGCTACTACTAAACTGCAAAGTCGCGTCTCTAACACCTATACGCCCACCGACCGTGAGAGAGAGCCCAAATCAAGCGGCAGCCGCCAAAGACGTGCACAGGCAGAGTATCGTGAGGAGCGTGATGATCGCTATGAACGTAAAAAGCCTCAAAAGCAGCAACGCTATGATAACCACCGCAGCAATAAACGACGTGATGATTGGAATCGTAATCGCGATCGGATTAATGGCTTTCGCGTTGAAGAACTGGATACAAGCAACGAGAGTCCGCTGCCATCCCCCGAAAAACAAAAGCAGTCGCCCAAGCGCCACCTCACTTCGATGGAGAATGAGAAACTCTCGCAGCGCGAAAAACTCGTACGCGACATCGAACAACGCCGTCTTGAATGTCTCGTTTGTGTGGAGCCGATCAAAGCCCATCACGCTGTATGGTCTTGTCAAAATTGTTACCACGTTTTGCATCTGAAATGCACTATCACTTGGGCATCTAGCTCGAAAAGTGAAAACGGCTGGCGCTGCCCCGCTTGCCAAAACGTTTTGGAGGAGGTGCCGCGCGAATATTTGTGCTTCTGCGGCAAGTTAAAAAACCCTCCAGTCACTCGCTCTGAACTTGCACACTCCTGTGGTGAGGTATGCTGCCGCATCGAGGGTTGTGCCCACGCGTGCACTCTACTATGTCATCCAGGTCCGTGTCCCCCCTGCCAGGCTAATGTGCAGCGGAGCTGCGGCTGCGGAAAATCTTCCAAGACCATGCAATGCGCAATGAAAGAAGAAATTGCATGTGAGGCACAATGTGGCAAGCCTCTTAACTGCGAAAATCATGTGTGTCAGGCACTTTGTCATTCCGGAAAGTGCGTTCCTTGCTCAGAGAAGCTAGAACAAAATTGCCACTGTGGAAAACAGCAACGTGAAGTCTTATGTACACGCGAAACCCACGACCGGCGGCATTATTCTTGCAGTAAACCGTGCGGTAAGGATCTTCTTTGCGGCAATCACAAATGTAAAGATTCATGTCATGCTGGAGTTTGCAGGCCATGTAAGCTAAGTCCTGAGCAGGTAACCTCATGTCCTTGCGGAAAGATGCCAGTGCCAAAGGATCAGCGGATATCTTGCTTAGATGCAGTGCCTACATGCGAAGGCATTTGTGGCAAAACGCTACGTTGCGGCAAGCCAGCACATCCACATCAATGTGCTAGCAAATGCCATCTTGGCCAGTGCCCACCGTGTAACAAACAGACGGCTGTGAAGTGTCGCTGTGGTCACATGGACCAAATGATCAAATGCCGCCAGTTATCCACCCGTGCGGACGATGCACGATGCAAGAAACGCTGCACTAAAAAACGTTCTTGCGGCAAGCATAAGTGCAACCAGGAGTGCTGCATTGATATCGATCACGCCTGTCCGCTGCCTTGCAACCGTACCCTCTCTTGCGGTCGTCATAAGTGCGATCAGCCATGTCATCGCGGTAATTGTCCACCCTGCTATCGTAGTTCCTTTGATGAATTGTACTGTGAGTGTGGTGCGGAAGTCATATATCCGCCCGTACCATGCGGAACAAAGCGTCCTCCATGTAAGCGACCATGCTCACGTGTCCATCCTTGCGAGCACACTCCTCAACACAATTGCCATGCGGCAGCCACATGCCCACCATGCATGATGTTCACAACAAAATGGTGCCATGGACAGCATGAACAACGCAAGACTATTCCATGCTCACAACCAACCTTTAGTTGTGGTCTAGCATGCGGTCGACCGCTGCCTTGCGGTCGTCACAAGTGTGTTAAGGCTTGCCATGAAGGCGTCTGTCAAACGGGAGGAGAAACCTGTCGTCAAAACTGCACTAATACGCGTGCTCATTGCGCACATAAATGTGCAGCTCCATGCCATGATGGTACCTGTCCAGAGACGCCCTGCAAGGAGTTGGTGGAGGTGCAGTGTGAATGTGGACATCGTAAGCAAAACCGCAGCTGCCACGAGCTAGCTCGCGAATATAGCCGCATTGCGACAGCACAATTGGCATCTTCCATGGCAGAGATGTCTCGAGGAAATTATATGGAGCTAAGCGAAATATTGGCGCCTGTTAAGCTTAACAAAACGAACCGAACTCTCGATTGTAATGACGAGTGCCGTGTTGTAGAGCGTAACCGTAAGCTAGCAATTGGATTGCAAATTCGCAACCCAGACACACAGCAAAAATTGCTAACGAAGTACTCGGACTTTTTGCGTACATTTGCCAAGCGCAATCCTGTACTTACAAAATCGGTTTACGAGACCCTTAGCGACCTTGTGAAACTAGCCAAGGAAAGCAAACAGAAATCACGTAGCCATTCGTTTCCAACTATGAATCGGGAGAAGCGACAGCTTGTCCATGAGCTGTGCGAAATGTTTGGTGTAGATTCGGTATCGTATGATAAGGAGCCAAACCGCAATGTGGTTGCCACGGCTCATAAAGATCGGTCGTGGCTTCCTGCCACAAGTATAATGGAAGTCTTGGCGAGAGAATCAGGTCAGCGTCGTGTGCCCGTACCCAGCAACAATGCCTGGAGCCTTAGGAAATTGTAG
Protein Sequence: MAEYWQQQSNGGSSLFPPADESYNASVQSNDDLIVNSNNNYVNFNQFIMQHNLSSSNLPSATVGDGMGTVGGGGAFGLASSVSQTPRSSGLSSIYGNFSSQPFIEYGDGDNPATSNYSGTTFTNLYTPFNPNPFAASFDFNASKLHANAPEFVPNFAKMSLNASTGVNGNMPTEMNANGNNTASLDENSDQVQLSAASTTKTAGPSIMGINVHTQQHQRGATTKLQSRVSNTYTPTDREREPKSSGSRQRRAQAEYREERDDRYERKKPQKQQRYDNHRSNKRRDDWNRNRDRINGFRVEELDTSNESPLPSPEKQKQSPKRHLTSMENEKLSQREKLVRDIEQRRLECLVCVEPIKAHHAVWSCQNCYHVLHLKCTITWASSSKSENGWRCPACQNVLEEVPREYLCFCGKLKNPPVTRSELAHSCGEVCCRIEGCAHACTLLCHPGPCPPCQANVQRSCGCGKSSKTMQCAMKEEIACEAQCGKPLNCENHVCQALCHSGKCVPCSEKLEQNCHCGKQQREVLCTRETHDRRHYSCSKPCGKDLLCGNHKCKDSCHAGVCRPCKLSPEQVTSCPCGKMPVPKDQRISCLDAVPTCEGICGKTLRCGKPAHPHQCASKCHLGQCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCTKKRSCGKHKCNQECCIDIDHACPLPCNRTLSCGRHKCDQPCHRGNCPPCYRSSFDELYCECGAEVIYPPVPCGTKRPPCKRPCSRVHPCEHTPQHNCHAAATCPPCMMFTTKWCHGQHEQRKTIPCSQPTFSCGLACGRPLPCGRHKCVKACHEGVCQTGGETCRQNCTNTRAHCAHKCAAPCHDGTCPETPCKELVEVQCECGHRKQNRSCHELAREYSRIATAQLASSMAEMSRGNYMELSEILAPVKLNKTNRTLDCNDECRVVERNRKLAIGLQIRNPDTQQKLLTKYSDFLRTFAKRNPVLTKSVYETLSDLVKLAKESKQKSRSHSFPTMNREKRQLVHELCEMFGVDSVSYDKEPNRNVVATAHKDRSWLPATSIMEVLARESGQRRVPVPSNNAWSLRKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00338822;
90% Identity: iTF_00338822;
80% Identity: -