Ccos010275.1
Basic Information
- Insect
- Chymomyza costata
- Gene Symbol
- nfxl1
- Assembly
- GCA_018150985.1
- Location
- JAECWU010000796.1:220410-224009[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.5 1.4e+04 -3.7 2.1 15 19 155 159 154 159 0.82 2 20 0.1 9.8e+02 -0.0 0.2 4 10 190 196 189 198 0.94 3 20 4.4e-08 0.00041 20.3 16.1 1 18 204 220 204 221 0.98 4 20 0.31 2.9e+03 -1.5 1.5 5 10 246 251 246 251 0.95 5 20 6.6e-07 0.0062 16.6 15.0 1 19 257 276 257 276 0.98 6 20 0.28 2.6e+03 -1.4 1.0 5 10 300 305 300 305 0.93 7 20 1.2e-09 1.1e-05 25.3 14.0 1 19 311 329 311 329 0.99 8 20 0.89 8.3e+03 -3.0 0.5 1 7 354 359 353 361 0.49 9 20 1e-06 0.0096 16.0 12.4 1 18 364 381 364 382 0.97 10 20 0.64 6e+03 -2.5 0.5 1 5 391 395 391 400 0.71 11 20 0.00065 6 7.0 17.7 1 18 416 433 416 434 0.95 12 20 2.1e-07 0.002 18.2 14.7 1 19 443 461 437 461 0.90 13 20 0.33 3.1e+03 -1.6 1.1 8 13 497 502 496 503 0.83 14 20 1.4e-05 0.13 12.4 7.8 10 19 507 516 504 516 0.91 15 20 0.031 2.9e+02 1.7 4.1 3 11 529 537 519 538 0.83 16 20 4.4e-05 0.41 10.8 4.5 1 12 601 612 601 612 0.97 17 20 2 1.9e+04 -5.1 4.0 5 10 627 632 625 632 0.88 18 20 0.0013 12 6.1 14.3 3 18 641 656 640 657 0.93 19 20 1.7 1.5e+04 -3.8 1.4 8 13 662 667 661 667 0.73 20 20 7.2e-06 0.067 13.3 14.8 1 16 707 721 707 728 0.92
Sequence Information
- Coding Sequence
- ATGGATGAATTTCAAGCGAAGAAAATTGTAGCGACAGCGCAGAAAATCTTTTATGAAGTTTCATCTAGTTCAGAGGACGAAGGCGCTGAATATGATGAAAAAACTATACTTGACTCGGTGTTTCAACAATATCAACCATCTTTAGACTTGTCAAAAGCCGACTTCATTCACAATGGAAATGGCCAAAGATGGAGCAGAACTTCCACCTTTCTCGAGAATGTGTTGCACTCAAGTGCTGCATGTCTCATATGCATCGGAAGCATACGAAGAGCTGAATCCATATGGTCTTGCAAAAACTGTTTTTGTTTCTTCCATTTGAATTGCATTCAGCGATGGGCAAGAGATAGCCTTGTTCAAATGAAAGCTAAGGCTGCAGAGCAGCAAAACGATGATCAGGCATACTACAATCGCCAAGGCGAGTACGTGCAGCCACTGAAACCGAAAAAATCATTTTATTGGAGCTGCCCTCAATGTAGAAAAGATTATTCTCCAAATGAACGGCCCGAACAATATGAATGTTTTTGTGGAAAGGAAATAAATCCGTTACCTCAACCTTTCATTGTTCCTCATTCTTGCGGTGAAATCTGTGGCAAGCAGCTTCAGCCGAAATGTGGCCACGAATGTAAGCTACTCTGTCATCCGGGACCGTGTCCACCTTGTGCTCAGCTAGCACAAGTCTCGTGCCTCTGTAAGAGGTCATCATTGCGTACCGTGCGTTGTATAGACAAGGAATGGAAATGCGAACAAATTTGCCAGGAACTGCTTAAATGTGGAAAACATGAATGTAAACAAAATTGTCATGTACCAGGTCTATGTCCGCCATGTTCCAGCAAGAGCACTCAGCCTTGCAAGTGCAAACGTGAGGTGAAAAGCGTTAATTGTGCACAACTAATATGGAGGTGTCAAAATGTTTGTGGCGCAGCATACTTGTGTGGTCTTCACCGCTGTGAAAAAGTTTGTCACGATGGCCCGTGCGGAGATTGTCCCCTAAGCCTTCCAAGACCATGCCCTTGTGGAAAAAATATCCAAACTATTCCCTGCTCTCAGACGGTTGACACTTGTGGCGATACTTGCCAGAAATTACTACAATGTGGATTACATACTTGCGCGCATCGTTGTCATCGTGGAGCCTGCAATAAATGTCTAGCTATAACAAAAAAGAAATGTCGCTGTGGGTTGCATGAAAAAGAAGTGCCATGTTATAAGGTCTTTACTTGCGACACAAAATGCAGGCTAATGCGAGATTGTTGCAAACATATGTGCAATCGAAAGTGTTGTGACGGCAATTGTGCTCCCTGTGAGAAGATCTGCGGTAAACAGCTTAATTGCAATAAACATAAGTGCCAATCTGTTTGCCATAACGGTCCCTGTTTTCCCTGCCAAAGGGATTCGCAAGTCAATTGTCACTGTGGAAAAACTCGAAGATCTGTGCCTTGTGGGCGTGAGCGTTCTGCCCGAATTGTTTGCTTAGAGCAATGCCGGATTCCGAAGAAGTGTCACCATGGTACCATTCATCGTTGCCATAAGGGTCCGTGTCCACCATGCCGTGAGAAATGTGGACTACCAAATGATTCCAGTGACTGTAAACATATATGTGAAGCTAGGTGTCATGCGGCAGTTCCATTAGCTAAGGACAAAGGAGGTGCGCGGGGTGACAAGAATGAATACAAGGCCTTGCCACACCCGAAATGTGCAAAAGACGTTACAGTATCATGTTTTGGGGGTCATACAGTTGCTATTCGACCATGTTTTCAACAAAGCACTTTTTCATGTGGAGAACGTTGCGGTAGAAAATTAAATTGCGGCAACCACTTATGTACACTTGTCTGTCATCCCGTTCCAAACCCACATGATAAACAGGAGCAGACCGGGTGTGCCACGTGTGAAGAGAGGTGCGATGTTCCTAGGCCTTTGGGCTGCAAGCATGCTTGCTTAAAGCTTTGCCATCCTCCTCCGTGTGAACCATGCAATTTTAACATAAAAAATAAATGCCACTGTGGACTAAACTATGTCTTGTACAAGTGTCGTGAGTTTTTTGATGCTAGTGGCACAAGTGATGCTGTCTCACGTCAAGAACACTTTCTTAGTTGTGGAAATCGCTGTTTTAAGGAATTCGCATGCGGCCATCGATGCAAAGCGATATGTCACTCTGGAAAATGCCCGAACCCCGAACTCTGTTGTAAAAAAGTACGCATTTATTGTAGCTGCAAAAGAAACAAGCTTGAAATTTCTTGCGAAAAACATAGAGCTGGATTATTAGCATTAAAATGTGATGAGCAGTGTGCCAAAGAATACTCTATCTCGTTTGCAGCTAAACAAAAGAAAATTGAACAGGAATTACGCAATGAGCAATACAAAAACCAGCTAGAAATTGAAAAATTTGAAAAGAAGTTTTCGAAGCGGAAAATTCGAACACGAGAAACTGTTATAAATCCAACCAAACCGAATACCAACTGGAGGAGGTTGGGCATTATTGCTCTGGCTTTATTATCATTTGTTGTAGCTGTTAGTGTAGCTTTTTACGCCGATGGTTAA
- Protein Sequence
- MDEFQAKKIVATAQKIFYEVSSSSEDEGAEYDEKTILDSVFQQYQPSLDLSKADFIHNGNGQRWSRTSTFLENVLHSSAACLICIGSIRRAESIWSCKNCFCFFHLNCIQRWARDSLVQMKAKAAEQQNDDQAYYNRQGEYVQPLKPKKSFYWSCPQCRKDYSPNERPEQYECFCGKEINPLPQPFIVPHSCGEICGKQLQPKCGHECKLLCHPGPCPPCAQLAQVSCLCKRSSLRTVRCIDKEWKCEQICQELLKCGKHECKQNCHVPGLCPPCSSKSTQPCKCKREVKSVNCAQLIWRCQNVCGAAYLCGLHRCEKVCHDGPCGDCPLSLPRPCPCGKNIQTIPCSQTVDTCGDTCQKLLQCGLHTCAHRCHRGACNKCLAITKKKCRCGLHEKEVPCYKVFTCDTKCRLMRDCCKHMCNRKCCDGNCAPCEKICGKQLNCNKHKCQSVCHNGPCFPCQRDSQVNCHCGKTRRSVPCGRERSARIVCLEQCRIPKKCHHGTIHRCHKGPCPPCREKCGLPNDSSDCKHICEARCHAAVPLAKDKGGARGDKNEYKALPHPKCAKDVTVSCFGGHTVAIRPCFQQSTFSCGERCGRKLNCGNHLCTLVCHPVPNPHDKQEQTGCATCEERCDVPRPLGCKHACLKLCHPPPCEPCNFNIKNKCHCGLNYVLYKCREFFDASGTSDAVSRQEHFLSCGNRCFKEFACGHRCKAICHSGKCPNPELCCKKVRIYCSCKRNKLEISCEKHRAGLLALKCDEQCAKEYSISFAAKQKKIEQELRNEQYKNQLEIEKFEKKFSKRKIRTRETVINPTKPNTNWRRLGIIALALLSFVVAVSVAFYADG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00338821;
- 90% Identity
- iTF_00338821;
- 80% Identity
- -