Ccos001974.1
Basic Information
- Insect
- Chymomyza costata
- Gene Symbol
- pnr
- Assembly
- GCA_018150985.1
- Location
- JAECWU010000367.1:753396-760751[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7 8.5e+03 -3.5 0.1 23 27 16 20 13 24 0.62 2 2 5.8e-17 1.8e-13 49.9 2.9 1 35 482 515 482 516 0.98
Sequence Information
- Coding Sequence
- ATGCTACCTAAAACAATGCCTAATGACGGCTTTCCCACAGTCATCTGCAGGGATTGCCGTGCCAAGCTTAAATCCTTTTGGATGTTTCGATCAATGGCACTTAACTCACACAATGCTTTAAAAGATTTTCTTGCAGTTGCTGAAGTTTCGAAAAATTTTGAGCCTTCCTATTTGGAAATTAAGTTGGACACAATTTTGAAATCTTCATCCGAAGCTATTGCTGCAAAGGCTCTGACCGAACTAAGCAAGTCTTCAAAAGCCAAGTATACGAATACAAAATTGGATGGTATGATGCAAACTCCCAGTGAAGTAGTATATAGAAGTGATCAGCATCATCAACAACTACAGAGCAAAATGCCAGCACCTTCATTATATCTAAGCTCGTTCAAATCACCAGCAGCCTTAATGCAATCACCTTTGAATAAAGCAGACTATACTGCACAAGATATTATAACGCCAATAGATAGCGATAAACAATCTGAAAATCTAACTGCTAAATCAAAAACAAAAGATGCAGATGTTGAACAATATAAAAACTTGCAACAGCAACTAGAGACTGCCGCAGTGCTTATGGATATAAGTAAAAAAATTGTTATTTCACCTCCAAGCTCGAATCCCCAATCTCCATGTCTTACTGCTCTAGCAGATACAAGTATTAATAGTTCTGTGATAAAATCAAAACGTCCATCAAACGACAATGAAATTCAAAATGACATGGAAATAGATTTATCCGTCAAAAAACAAAAAACTGAATATCCAAATCAAAGGAATTTAATCCAAATGCATCACCTTTGCCAAAATCCAATACTCGAAATGCATGCAAATACATCAAGAACTGATGTAGATAATAAAAACTACAGTATTAATATGAATGAAGCCGGACCGTCAGCTTATAAGCCGCAAATATCTAAGATAAAAACAGAAAACTGTAATGCCGCCTGTCTATCCGATTTGGAAGACAGCTCTGATTCAAACAAATTGGAAATGGATATTGCATCTGTAATTAATGATAGAAAAACGCCAGATAGTGTGAACTCCGATCATGCAACAGACATGGCTACAACTCAACTTTGGCAAGCATTGGCGCGCTCTGCTGCCAAAAATAAAGAAAAAACTCCGGCCACGGAACTTTTACGAAACATGATGAGCCAATCTTTCGTGCTATCGGTGCCACCACCATTAGGCGTAGCAAAAGTACCTGAAGAACCAATAGCCCTTTTAAAGGATGCTTCGGAGGCTCAACTCAGCAAAGTGAAAATATGTAGAAGGAAGCAAAGTTTCCCTACTAAAACTGATTGCGGAGATGCAACAGGAGGAACTAAAGTAGCAGAATCAGCGACTAACTCAGACTCTGTCTGCAGTGCAATACCAGATGCGATTAAAGATAAAAAGAATTTCAAGGGTAATGCCACGGTACTAACTGGATCTCAAAAGGATATGTCTTGTTCGAACTGTGGCACACTTACAACAACCATTTGGAGACGAAGTGCTAAGGGTGAAATGGTATGCAATGCTTGCGGCTTATACTTTAAGCTACATGGCGTTAACAGACCCCATTCGATGAGACGTGATACTATACACACGCGGCGCAGGCGTCCAAAGGAATGCGAGAGATCCAAGAAAAGAAATAAGCAACTGGCATGTTCTTCTCGAATAGAGCATAAAACAGAAAATGTAAACTCCGCTGTGGAGCCAAACCAGATGGATTTTTTATCACCTGAAACTCTTAGTATATCAGATATAGTATTCAATAAATATAAGTGTGATGCCGAAGCAGCAGCATTAAAGGATGTTTTTTTAAGAAGAAATAAATCGCAGATTTCTTCGGCGTTTAATAATACTACCTGCGAAACCGAGGAGTTATCAGTACCTCTCAATCTTGTTTCCAGTGAAAGCAATACTAAGTTAACATAG
- Protein Sequence
- MLPKTMPNDGFPTVICRDCRAKLKSFWMFRSMALNSHNALKDFLAVAEVSKNFEPSYLEIKLDTILKSSSEAIAAKALTELSKSSKAKYTNTKLDGMMQTPSEVVYRSDQHHQQLQSKMPAPSLYLSSFKSPAALMQSPLNKADYTAQDIITPIDSDKQSENLTAKSKTKDADVEQYKNLQQQLETAAVLMDISKKIVISPPSSNPQSPCLTALADTSINSSVIKSKRPSNDNEIQNDMEIDLSVKKQKTEYPNQRNLIQMHHLCQNPILEMHANTSRTDVDNKNYSINMNEAGPSAYKPQISKIKTENCNAACLSDLEDSSDSNKLEMDIASVINDRKTPDSVNSDHATDMATTQLWQALARSAAKNKEKTPATELLRNMMSQSFVLSVPPPLGVAKVPEEPIALLKDASEAQLSKVKICRRKQSFPTKTDCGDATGGTKVAESATNSDSVCSAIPDAIKDKKNFKGNATVLTGSQKDMSCSNCGTLTTTIWRRSAKGEMVCNACGLYFKLHGVNRPHSMRRDTIHTRRRRPKECERSKKRNKQLACSSRIEHKTENVNSAVEPNQMDFLSPETLSISDIVFNKYKCDAEAAALKDVFLRRNKSQISSAFNNTTCETEELSVPLNLVSSESNTKLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336382;
- 90% Identity
- iTF_00336382;
- 80% Identity
- -