Ccos014966.1
Basic Information
- Insect
- Chymomyza costata
- Gene Symbol
- -
- Assembly
- GCA_018150985.1
- Location
- JAECWU010000256.1:2532439-2535544[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2 1.6e+02 3.1 0.6 2 23 113 135 112 135 0.93 2 13 0.0035 0.28 11.8 1.3 2 23 145 167 144 167 0.91 3 13 6.6e-05 0.0052 17.2 4.7 2 23 177 199 176 199 0.96 4 13 0.01 0.81 10.3 9.1 2 23 473 494 473 494 0.97 5 13 1.7e-06 0.00014 22.2 2.9 1 23 500 523 500 523 0.95 6 13 0.0021 0.17 12.5 1.0 1 23 528 551 528 551 0.93 7 13 0.00013 0.011 16.2 4.6 1 23 565 587 565 587 0.96 8 13 2.4e-05 0.0019 18.6 1.2 1 23 592 614 592 614 0.98 9 13 3e-05 0.0024 18.3 1.7 1 23 620 642 620 642 0.95 10 13 2.2e-05 0.0017 18.7 0.7 1 23 648 670 648 670 0.98 11 13 3.1e-07 2.5e-05 24.5 2.7 3 23 678 698 677 698 0.99 12 13 2.3e-08 1.8e-06 28.1 1.1 1 23 704 726 704 726 0.99 13 13 0.35 28 5.5 3.4 1 19 731 749 731 754 0.89
Sequence Information
- Coding Sequence
- ATGGCATCGCCTGCTAAAATTGACGCAGACCGCGTCTGTCGCGTTTGCCTTTGCGAAGTCGGCGAGTTTTTCTTCATCTATGATGAGGCTCCTGTAGAACAGGGGGCCAACATTGCCCAAATACTAAATGAATGCACGCGCTACACTTGTGAACGCTATGACACAATGCCGCATCACATGTGTGCCAATTGCATTGTACAGGCACGCCATGCCTATCGCTTTAAGCGACGTGCCGAGGAATCCTATCGTTCACTGGTCTCCTTACTTGGACGGATACCTGTTCATAAACAGAACCATAACGATGTGTGCACACAAACCGAGCAGGTGGCTCTGTTATCTTGTGAAATGTGTAATGACAAGTTTCTTAATAGCCTTGAATTGCGTTTGCATCGTAATCGGGAGCACAAGGATCTCATCGGCACGGATAACCTCAAGTGTAAGGTTTGCGCGAAGCAGTTTCCACATTTGCGTCAGCTGCGCAGCCATCTGGTGCAGGAGCATAAACAAACTATGTCCATACAACATGTTCAATGCCGCCTGTGCCATCGCTCATTCTCAAGACGCGATCACATGCTGCGGCACATTCGAAATGTACACAAGGACGACAATAGGCGTAAAGTACGTAAAGTAACAGCTAAAAGGGTGCAGAAGCGGGAGAAGCAGCCACAGCAAACTGCTACTTGGCCGCATGCTACCCTTGGAGATGAGTTAGAGTCCACGGCGGTTATGCTTAACGAAGATGCCTGTGCTGACGATGATCAGGACTACCAATCCAATACAAACCCCATATCCAGTAATGATGAGGCGGACAGTGACGCCGAGGACGAGGCGAAAAAATCACTATGGTTGAATATCAAGCCAGAGCCTTGTCCGGAAAATGAAGAGGTGGGTTCATCTGAGGCAACCAATGTTTTAACCCATCTGAAACGTGAAAAAAGGCGACGTTGGAAATCAAAGCAGGCGCTTGATAGTGATAGCGACAACGAATTCCTAGCCGGCAAAAATGTGAGCTGTGAGGAGAAAGAGAAGGAAGACCCAAAGCGCATTCAGACTACGTCTAATACGAGTGCTGATACTAATGCAGCGACTATAAAAGATGAACCAGAAGAGCGTGTGCCTATAAAAGAGGAACGCGTGCGGCAAGTTAGTGATGAGGAACAAGAGCTAGAAGAGGGTGAGCTGAATATAAACATACCAGAATTGCTACACAGCGACGAGGACGAGGATGCAGATGCAGATGCAGACGGATTTGGTGATGAGGACAGCACAACAGATGATGATGATGACGCAGCTGAAGAAGAAGAGAAGATACAAAAGAAGAAGCCTAAAGTTGAAATTGTGCGGGAATATCTTCAGAAAAAGCCCAACAAACAGCGACGCCGGCGTCGCAATCAAGATGAACCAAATTCCGAAAACCGTTGTGATGTCTGCCAGCGGACATTCTCGCGTCATTGTCATCTGTTGCGCCACAAACTTTCACATCTAGAAAAGAAACCACACAACTGTCCGCACTGTCCCAAGGCCTTTGCACGCAGCGATCATTTAAAAGCTCACGTTCAAAGCCTTCACAGCAGCAAAGAGCACAAGTGTAGCCTTTGCAATTCAGCCTTTGCACGGCTCGATGCACTGGAACGCCACAAGGTCAGCAAACACAATGGCGAGGGTTTGGATGCCAATAGTGAAGTAAAGCTACACACTTGCGAGTACTGCGCCAAGCGCTTCTCCAGCAAAACTTATCTCCGCAAACACACATTATTGCATACCGATTTTCTCTATGCTTGCAAGAGCTGCGATGAAACCTTCAAAGAGCGATCACAGCTACGCGAACACGAAAAAACGCACACGGGTCAGCGCAATTTCCTATGTTGCATTTGTGGAGACAGCTTTGCGCGTAATGATTATCTGCGCGTACACATGCGTCGTCATAATGGCGAAAAGCCCTACAAGTGCCGTTACTGCGTCAAAGCCTTTCCACGGGCTACCGACCTTAAGGTGCACGAGCGCTATCACACGGGCACCAAGCCCAATCTGTGCAACACCTGCGGCAAGAGTTTCCATCGCGCCTACAATCTAACCATACACATGCGTACCCACACCGGAGAGAGACCCTATAAGTGCGATCAATGCCCTAAAAGCTTTACCCAGAGCAATGATCTTAAAGCGCACATACGCCGTCATACTGGTGAGCGTTACAAGTGTCCTCACTGCGATGCCTACTTCCTGCAGTTGTACAATATGCGCAATCATTGTTTGAGTGCGCACAACAAGCATATTGAGACAAAGACGGGTCGACTACAACGCACTGGACTTTTGGAGGAAGGCGCTCAGTCGCATTTAAATACAGTGGTAATGCCGCATCCTCATCAGCAGGCTGCACAACAAGCTGCGCAGGCACAGCTGTTGCATCTACCCTTAGATTCAACAACAACCACGCCTTCGCCTACCCAACAGCAACAACAACAACAACACATGGCTACGGCGACCACATCGTCGCCTATAATACACTCACCCTTGGCTTTTAATGCAGCATCAGCAGCAACAACAACAACTACGATTGCCACGTCGGCGCCCACGCCTTCGCTGGTTGAAGCTGGAGTGGGAGCTGGAAGTGGCTTTGCCGCAGCCACAACTGCAGCTGGTGCACCTTTTGCTGCTTTTAATTTTACACCTGCCGTTATGGCTCATTTGATGTATAACCAGCATAGCCAGCACAGCAATGCTAGCAGCAATGAGCCGGGCAAATAA
- Protein Sequence
- MASPAKIDADRVCRVCLCEVGEFFFIYDEAPVEQGANIAQILNECTRYTCERYDTMPHHMCANCIVQARHAYRFKRRAEESYRSLVSLLGRIPVHKQNHNDVCTQTEQVALLSCEMCNDKFLNSLELRLHRNREHKDLIGTDNLKCKVCAKQFPHLRQLRSHLVQEHKQTMSIQHVQCRLCHRSFSRRDHMLRHIRNVHKDDNRRKVRKVTAKRVQKREKQPQQTATWPHATLGDELESTAVMLNEDACADDDQDYQSNTNPISSNDEADSDAEDEAKKSLWLNIKPEPCPENEEVGSSEATNVLTHLKREKRRRWKSKQALDSDSDNEFLAGKNVSCEEKEKEDPKRIQTTSNTSADTNAATIKDEPEERVPIKEERVRQVSDEEQELEEGELNINIPELLHSDEDEDADADADGFGDEDSTTDDDDDAAEEEEKIQKKKPKVEIVREYLQKKPNKQRRRRRNQDEPNSENRCDVCQRTFSRHCHLLRHKLSHLEKKPHNCPHCPKAFARSDHLKAHVQSLHSSKEHKCSLCNSAFARLDALERHKVSKHNGEGLDANSEVKLHTCEYCAKRFSSKTYLRKHTLLHTDFLYACKSCDETFKERSQLREHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCPKSFTQSNDLKAHIRRHTGERYKCPHCDAYFLQLYNMRNHCLSAHNKHIETKTGRLQRTGLLEEGAQSHLNTVVMPHPHQQAAQQAAQAQLLHLPLDSTTTTPSPTQQQQQQQHMATATTSSPIIHSPLAFNAASAATTTTTIATSAPTPSLVEAGVGAGSGFAAATTAAGAPFAAFNFTPAVMAHLMYNQHSQHSNASSNEPGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00338564; iTF_00336133; iTF_00336937; iTF_00339325;
- 90% Identity
- iTF_00336133;
- 80% Identity
- -