Ccau007536.1
Basic Information
- Insect
- Chymomyza caudatula
- Gene Symbol
- -
- Assembly
- GCA_035041775.1
- Location
- JAWNKW010000138.1:4189083-4192290[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.9 1.5e+02 3.2 0.4 2 23 113 135 112 135 0.93 2 13 0.0012 0.096 13.3 1.8 2 23 146 168 145 168 0.95 3 13 5e-05 0.0039 17.7 4.9 2 23 178 200 177 200 0.96 4 13 0.01 0.81 10.4 9.1 2 23 467 488 467 488 0.97 5 13 1.8e-06 0.00014 22.2 2.9 1 23 494 517 494 517 0.95 6 13 0.00063 0.049 14.2 0.7 1 23 522 545 522 545 0.93 7 13 0.00014 0.011 16.3 4.6 1 23 559 581 559 581 0.96 8 13 3.7e-05 0.0029 18.1 1.3 1 23 586 608 586 608 0.98 9 13 3.1e-05 0.0024 18.3 1.7 1 23 614 636 614 636 0.95 10 13 2.2e-05 0.0017 18.8 0.7 1 23 642 664 642 664 0.98 11 13 3.2e-07 2.5e-05 24.5 2.7 3 23 672 692 671 692 0.99 12 13 8e-08 6.2e-06 26.5 1.8 1 23 698 720 698 720 0.99 13 13 0.22 17 6.2 4.3 1 19 725 743 725 748 0.89
Sequence Information
- Coding Sequence
- ATGGCATCGCCGGgtaaaattgatgcagaccgTGTCTGTCGCGTTTGCCTGTGCGAAGTCGGCGAATTCTATTTCATCTATGATGAAGCACCCGTGGAACAGGGCGCTAACATTGCCCAAATATTGAACGAGTGCACGCGCTACACCTGCGAACGCTACGACAAAATGCCTCATCACATGTGCTCCAATTGCATAGTGCAGGCCCGTCAAGCTTATCGTTTTAAGCGACGTGCCGAGGAATCCTATCGTTCGCTAGTGTCCATTCTTGGACGCATACCCGTGCATAAACAAGACCACAACGATGTTTGCACCCAAACCGAGCAAGTAGCTCTGTTGCCTTGCGAAATGTGCAATGACAAGTTTCTTAATAGCCTTGAATTGCGTTTGCATCGGAATCGCGAGCACAAGGATTTAATCACCGGCACGGAAGAACTCAAGTGCAAGGTTTGCGCGAAGCAATTTCCACATTTGCGTCAGCTGCGTAGCCATCTGATGCAGGATCATAAACAAACTATGTCCATACAGCATGTACAATGCCGCATGTGCCATCGCTCGTTCTCGAGACGTGATCACATGCTGCGGCATATTCGCAATGTGCACAAGGATGAGGTCAGGCGTAGAGCACGTAAAGAAGTGGCTAAAAGGGTGCAGCAGCAGGAGGAGCAGCCGCAGAAAACTGCCACTTGGCAGCATGCCACGCTTGGAGATGAGCTCGAGTCCACGACGGTTATGCTGAATGAGGATGCCTGTGCCGACGATGACCAGGACTATCAATGCAATACAAATCCCATTTCCAGCAATGATGAGGGAGACAGTGATGCCGAGGACGAGGCAAAACAGTCACTATGGTTAAATATCAAGCCAGAGCCTTGTCTGGGAACAGAAGATGTGGGTTCTGCTGAGGCAACCAATGTTTTGGCTCAACTGAAACGTGAAAAGAAGCGAAGTCGGAAATCAAAGCAGCCGCCTGAGAGTGAAAGCGACAACGAATTCTTAAGCCGCAAACGTGAGAGCTGTGACGAGGAGGAGGAAGACCCAGAGCGCATTAAAAAGCCGTCTAATACGAATGCTGATACTAATGCAGCGACTATAAAAGATGAGCCAGATGAGCGTGTGCCTATTAAAGAGGAACGCCAGCGCCAAGATAGTGATGAGGAACAAGAGCGGGAAGAGGGTGAGCTCAATGTAAACGCCTCCGATTTACTACACAGCGATGAGGAGGAGgatgcagatgaatttgggGATGAAGACTGTACGGAAGATGACGACGAGGACGCagctgaagaagaagaggatcAAAAGCTCCCCAAAGTTGAAATTGTACGCGAatatctgcaaaaaaaaaccaataaacaaCGACGCCGGCGTCGCAATCAAAACGAACCAAATCCCGAAAACCGTTGTGATGTATGTCAGCGGACATTCTCGCGCCATTGTCATCTATTGCGCCACAAACTCTCGCATCTCGAAAAGAAGCCCCACAATTGTCCGCACTGTCCCAAGGCCTTTGCACGCAGCGATCATTTAAAGGCTCATGTTCAAAGCCTGCACAGTAGCAAAGAGCACAAGTGCAGCCTCTGCAATTCAGCCTTTGCACGTCCCGATGCGTTAGAACGACACAAGGTTAGCAAACACAATGGAGAGGGCTTGGATGCCAATAGTGAAGTGAAGTTACATACCTGCGAGTACTGCGCCAAGCGCTTCTCTAGCAAAACCTATCTGCGCAAGCACACATTGCTGCATACCGATTTTCTCTATGCCTGCAAAAACTGCGATGAAACCTTTAAGGAGCGCCAACAGCTGCGCGAGCACGAAAAGACGCACACAGGTCAGCGCAATTTTCTATGCTGCATTTGCGGAGATAGTTTTGCGCGTAATGATTATCTGCGCGTGCATATGCGTCGCCACAATGGCGAGAAACCCTACAAGTGCCGTTACTGCGTCAAAGCCTTTCCCCGGGCCACCGACCTTAAGGTTCATGAACGCTATCACACAGGTACCAAGCCCAATCTGTGCAACACTTGCGGTAAAAGTTTCCATCGCGCCTACAATCTAACCATACACATGCGCACCCACACTGGTGAAAGGCCGTACAAGTGCGATCAATGCTCCAAAAGCTTTACTCAAAGTAATGATCTAAAAGCGCACATACGCCGCCACACGGGCGAGCGTTACAAGTGTCCACATTGCGATACCTACTTCCTGCAGTTGTACAATATGCGCAATCATTGTCTGAGTGCACACAACAAGCATATTGAGACAAAGACCGGTCGACTACAGCGCACGGGACTCTTAGAGGAAAGTGCTCAGTCGCATTTGAATACCGTGGTGATGCCGCATCCGCATCAGCAGGCAGCACAACAAGCAGCGCAGGCACAGCTCATGCAACTACCGCTAGAGTCAACAACTACTACTCCGTCGCCtacgcaacagcaacaacacttGGCAACGGTAACCACCACAACGTCTATAATAAACTCGCCATTGGCTTttaatgcagcagcagcaacaactacaattgcATCGGCGGCACCTACGCCAGGATTGGTTGAAGCTGGAGTAGGTGTTGGAGGCGGTTTTGCCGCTACAACCACTTCAGCTGGAGCTCCCTTTGgtgcttttaattttccacCTGCCGTCATGGCTCATTTGATGTACAACCAGCACAGCCAGCAAAGCAATTCAAGCAGTAACGAGCCGGGCAAATAA
- Protein Sequence
- MASPGKIDADRVCRVCLCEVGEFYFIYDEAPVEQGANIAQILNECTRYTCERYDKMPHHMCSNCIVQARQAYRFKRRAEESYRSLVSILGRIPVHKQDHNDVCTQTEQVALLPCEMCNDKFLNSLELRLHRNREHKDLITGTEELKCKVCAKQFPHLRQLRSHLMQDHKQTMSIQHVQCRMCHRSFSRRDHMLRHIRNVHKDEVRRRARKEVAKRVQQQEEQPQKTATWQHATLGDELESTTVMLNEDACADDDQDYQCNTNPISSNDEGDSDAEDEAKQSLWLNIKPEPCLGTEDVGSAEATNVLAQLKREKKRSRKSKQPPESESDNEFLSRKRESCDEEEEDPERIKKPSNTNADTNAATIKDEPDERVPIKEERQRQDSDEEQEREEGELNVNASDLLHSDEEEDADEFGDEDCTEDDDEDAAEEEEDQKLPKVEIVREYLQKKTNKQRRRRRNQNEPNPENRCDVCQRTFSRHCHLLRHKLSHLEKKPHNCPHCPKAFARSDHLKAHVQSLHSSKEHKCSLCNSAFARPDALERHKVSKHNGEGLDANSEVKLHTCEYCAKRFSSKTYLRKHTLLHTDFLYACKNCDETFKERQQLREHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCSKSFTQSNDLKAHIRRHTGERYKCPHCDTYFLQLYNMRNHCLSAHNKHIETKTGRLQRTGLLEESAQSHLNTVVMPHPHQQAAQQAAQAQLMQLPLESTTTTPSPTQQQQHLATVTTTTSIINSPLAFNAAAATTTIASAAPTPGLVEAGVGVGGGFAATTTSAGAPFGAFNFPPAVMAHLMYNQHSQQSNSSSNEPGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00337741;
- 90% Identity
- -
- 80% Identity
- -