Basic Information

Insect: Chymomyza costata
Gene Symbol: -
Assembly: GCA_018150985.1
Location: JAECWU010000002.1:8815588-8820133[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0001 0.0083 16.6 3.2 1 19 491 509 491 514 0.90

2 15 9.7e-06 0.00077 19.8 0.1 2 23 522 543 521 543 0.95

3 15 7e-05 0.0056 17.1 1.6 1 23 684 707 684 707 0.97

4 15 0.033 2.6 8.7 0.8 1 19 714 732 714 735 0.94

5 15 0.017 1.4 9.6 3.1 1 23 744 767 744 767 0.93

6 15 2.6e-05 0.0021 18.5 2.1 1 23 773 796 773 796 0.97

7 15 3.9e-05 0.0031 17.9 1.2 2 23 804 825 803 825 0.96

8 15 0.00022 0.017 15.6 0.1 2 21 852 871 851 872 0.94

9 15 0.0091 0.73 10.5 1.1 1 23 922 945 922 945 0.97

10 15 0.06 4.8 7.9 1.5 1 23 982 1005 982 1005 0.96

11 15 1.3e-05 0.001 19.4 2.2 2 23 1037 1059 1036 1059 0.94

12 15 0.0023 0.18 12.4 0.0 1 23 1066 1088 1066 1088 0.98

13 15 0.00033 0.026 15.0 0.9 2 23 1095 1116 1094 1116 0.98

14 15 2.4e-05 0.0019 18.6 1.6 1 23 1122 1144 1122 1144 0.98

15 15 6.3e-05 0.005 17.3 6.9 1 23 1150 1172 1150 1172 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0001	0.0083	16.6	3.2	1	19	491	509	491	514	0.90
2	15	9.7e-06	0.00077	19.8	0.1	2	23	522	543	521	543	0.95
3	15	7e-05	0.0056	17.1	1.6	1	23	684	707	684	707	0.97
4	15	0.033	2.6	8.7	0.8	1	19	714	732	714	735	0.94
5	15	0.017	1.4	9.6	3.1	1	23	744	767	744	767	0.93
6	15	2.6e-05	0.0021	18.5	2.1	1	23	773	796	773	796	0.97
7	15	3.9e-05	0.0031	17.9	1.2	2	23	804	825	803	825	0.96
8	15	0.00022	0.017	15.6	0.1	2	21	852	871	851	872	0.94
9	15	0.0091	0.73	10.5	1.1	1	23	922	945	922	945	0.97
10	15	0.06	4.8	7.9	1.5	1	23	982	1005	982	1005	0.96
11	15	1.3e-05	0.001	19.4	2.2	2	23	1037	1059	1036	1059	0.94
12	15	0.0023	0.18	12.4	0.0	1	23	1066	1088	1066	1088	0.98
13	15	0.00033	0.026	15.0	0.9	2	23	1095	1116	1094	1116	0.98
14	15	2.4e-05	0.0019	18.6	1.6	1	23	1122	1144	1122	1144	0.98
15	15	6.3e-05	0.005	17.3	6.9	1	23	1150	1172	1150	1172	0.98

Sequence Information

Coding Sequence: ATGAGGCTGCCGACAATATGTAGGACTTGCGACACGATGGACTGTGATACTTTGTACGTACTCGCTACGCCCGCAAAACTTGATTCTGAAAAAGTTCTTTCAGATCTGTTAACAGAGTTGACCGGAATTGATGTTAGTGGATTCTATGCTCAAAAACTGCCACAATTACTGTGCAGCAGTTGCACGCCGAAACTGATTAACAGCCACAGCTTTGTCAATCAAGCACGAACAGCCAACGATATCTTCACAAATCGCCTTCTAAACGCCCAGGCGGTTGATACTGCAGGCTGCGTAAAGATACCGTCTATTGAGCTACACAATGTTAAAATCAAAATGGAAACTAGAGACGATGAACTAATAGTACCTGAAGCAATCAAGGAAGAGCGGGGCACGCCAATTTGTAGGACTTGCGATACAACACATTGCGATACCTTGTACAAACTCACGACGCCAACAAATCAATATCCTGAGAAAATTCTCTTGGATCTTTTAACAGAATTGACCGGAATTAATGTTAATGAATCCCATGCACAACAACTTCCACAAGTTCTCTGTAGCAGTTGCACACCGAAATTAATTGATGGCTATTACTTTGTTAATCAAGCTCGAACAGCCAATGAAATGTTAATGAATAACTTGCTTAGCAGCCAAGTAACTGATTCCGCACACTGCATCCAGAATTGCGGGGTTGAAATCAAAACAGAAGCCAAAGACTATGAAGTAGATAATGCCACAATCTGCATGAATCAACCAGAATTTGCGCAGTTTCAACAGGCTGAGGACGACACATTAATATTACCTGATGAAATTAAACAAGAGCAGGATACGCAAATGTCCCTAGCAGGCTTATTTGTAACAGGTAACGCTTCCCAAGGTTACAAAGACGAAGTATTAATGTCACCAGAGGAACTGAAACAAGAGCAGGATACGGAAATGTCACCTTTAGAATTTAATGCAAATAACCCTAGGAATGGACACGAGGACGATGATTCTTTGGATCGTTCGGTGAGGCTGATTCCGTATACGGAGCTGCCTAAGTCAGACACATTTCAACAGTCAGAATTTCTTGGTACGCCATACGGAAATGCCGTAAATAGTAGTAAAAAAGCAATGGTCACACCATTAACATCACCGAAAGAACTGAAGCAAGAGCAGGATGCAGACTTGTCCGATACAGACGTAGACGCCACAGATATCTCTAGTCAAGGTTACGACGATGATGATTCGTTAGACCGCTCGGTGAGGCTCATACCATGTACAGTGCTACCAGATTCAGAACTATTTCATCAGGGCGGTCAATTAGTGTCATCAAGAGCACTCCAGCAAGAACAGAATACGGATATATCCTATGCAGGATTAGAAGCCACAGATGCCTCCCGCCTGGATTACGTGAACGATAGTTTCTGGAGCTCACTAAACGATTTACAACAGCACAATCTTAAGTTGAAAAAAAAGAGAGCTAAAAAAAGGTATAATTGCTATGAATGTCCCAAAAGTTTTAGCCGAGCAGATTACCTAAAACGTCATTGCTCACGCATACATATACCAAAATCGGATTGGCTTCCCTGTACGATTTGCGATCTCAAATTTAGCCGAAGCGACGCACTACAAGCTCATCTAAAAGATCATCGAGATCCAAAAAGTTTGGCGAATCGCAATGAAGGGAAAAAGGTCAAGGACATAGATTTGAATCTTTGCAAGCCACATGGTTGTAAGCTTATTGAATGCATGATTTGTCACAGCAAATTCGATAAGATAACAAAACTACGATGCCATATGGAGCAGCATCCTGACATATTTAATTTTGACGATCAGCACAAGCTGAGGGCCCATGAGCTTGCGGAATTGTTGTATTCTGATTTAATGATACAATCTTCGGAGCATCTGCAAGATCTTATATTCAAGGAGTTGGCAACTGGCGCCTACCAACGATTTTGTTCCATTACCAACCAGTTTGGTTACGAAATAAATTTGGACAGTTCAGAAACCGAAAGCGATGAGGAATACGAAGTGGCCGAAAAAAAACGCAAAAGAACTCAAAAAGAGGAATATATGTGCGAACTATGTCAGCAGAGATTCCCACGTAAATATCAGCTTTATGATCATCAACGTCTGTCACATTCCTGGTCCGAGGCTCCTCATGTTTGCGGACGCTGTGATACGCGCTTTGTTAGCTTGCAACTGCTACAACATCACAACGACTCCCAGTGCAAGAATGCGCAAAAGCGTTTTTCGTGCAGCAAATGTCCCTTGCGATTTCGCTGGAAACATAACCTTAAAGCGCACTTTCAGGAAAACCACATTACAAACCAGACTTTCGAGTGTCACGAATGTAAACGGGTCTTTGACAAAAAAAAATCGCTGACTGTGCATTTGCTAAGTGTTCATGCTGACGAATCCAAGCTTATTCCTTGCCAATGGTGCAACCGCAAGTTCTATCGTCGTGACTACTTGGTCAAGCACCTCAAACGGCACGGCATCAATGAACAGAACATACCATTGGCCGAGACGCTCATTGCCGCCACATCGAAACCAAATGGTCCAAAGAACATTACCTGCAAGATTTGCAATATACAATTTAGTCGTATCAGTGATTTGCGTACTCATATTCAACAGGATCTTGAGTCGGAACAGTCGTTACATCAAAACTTAAAATCACTGGAGAATTACTCCATATCAAATGATTCTGGTTTTGAACTGCAGCTGGATGACTCAGAAACGGAAGATGAAGGCAATACTGTTTCCGATAAGGCACCTTCGATTTATGCTTGTGGCGTGTGTCAGGTACAATGTCGACGCAAGTATGAAATGATACAACATCAAAGCACTATTCATCGCTTTGACAAAATCCCATATAATTGCGAGCGTTGCATATTCAAGTGCGTTTCCAAGAAAATAATGGACCATCACAAGCAAGTGCAATGTCTCTGTGAGCAAAAGAAACATGTGTGTAGCAAATGTAGCTTCAAATTTATGTGGCCTGAAAATTTGGAAAAACATGTACAATCCCAGCACGGTGGCTGGCAAGAGGAAAAGTCTGACAACACCTCACTAGCGGCTAAATCGGAAATTGAAAAATGTGATTCTGAAGCTGGCATACAAGTGCTCAGTTGCCCACACTGTGATCGAACCTATAAGCGAAAGTCGCGGCTCAGCAATCACATACGGGATGTACATATCAATAAGAAAAAGACTTTCGTGTGCTCCGTATGCGGCAAAGACAAGCCTTCGGCTGGCAGTTTAGTTGCACACATGAAGCGTCATACGGGCGAGAAACACGTGAAATGTAGTATGTGCGAAATGTCATTTCCTAGTCATTCCGAAATGGTAGCCCATAGACGCATGCATACGGGTGAAAAACCATTCCATTGTACAGTTTGTGGGAATGATTTCTCAAGCGTTTCTAATCTGAAGAGACACGTTTTGACGCACAGTGATTTAAAACCGTACAAATGTAATTTCTGTGACAGATGCTATCGGCAGGCTCATGGTTTAAAAAATCACATGAAACAACATAGTAATCAGTGA
Protein Sequence: MRLPTICRTCDTMDCDTLYVLATPAKLDSEKVLSDLLTELTGIDVSGFYAQKLPQLLCSSCTPKLINSHSFVNQARTANDIFTNRLLNAQAVDTAGCVKIPSIELHNVKIKMETRDDELIVPEAIKEERGTPICRTCDTTHCDTLYKLTTPTNQYPEKILLDLLTELTGINVNESHAQQLPQVLCSSCTPKLIDGYYFVNQARTANEMLMNNLLSSQVTDSAHCIQNCGVEIKTEAKDYEVDNATICMNQPEFAQFQQAEDDTLILPDEIKQEQDTQMSLAGLFVTGNASQGYKDEVLMSPEELKQEQDTEMSPLEFNANNPRNGHEDDDSLDRSVRLIPYTELPKSDTFQQSEFLGTPYGNAVNSSKKAMVTPLTSPKELKQEQDADLSDTDVDATDISSQGYDDDDSLDRSVRLIPCTVLPDSELFHQGGQLVSSRALQQEQNTDISYAGLEATDASRLDYVNDSFWSSLNDLQQHNLKLKKKRAKKRYNCYECPKSFSRADYLKRHCSRIHIPKSDWLPCTICDLKFSRSDALQAHLKDHRDPKSLANRNEGKKVKDIDLNLCKPHGCKLIECMICHSKFDKITKLRCHMEQHPDIFNFDDQHKLRAHELAELLYSDLMIQSSEHLQDLIFKELATGAYQRFCSITNQFGYEINLDSSETESDEEYEVAEKKRKRTQKEEYMCELCQQRFPRKYQLYDHQRLSHSWSEAPHVCGRCDTRFVSLQLLQHHNDSQCKNAQKRFSCSKCPLRFRWKHNLKAHFQENHITNQTFECHECKRVFDKKKSLTVHLLSVHADESKLIPCQWCNRKFYRRDYLVKHLKRHGINEQNIPLAETLIAATSKPNGPKNITCKICNIQFSRISDLRTHIQQDLESEQSLHQNLKSLENYSISNDSGFELQLDDSETEDEGNTVSDKAPSIYACGVCQVQCRRKYEMIQHQSTIHRFDKIPYNCERCIFKCVSKKIMDHHKQVQCLCEQKKHVCSKCSFKFMWPENLEKHVQSQHGGWQEEKSDNTSLAAKSEIEKCDSEAGIQVLSCPHCDRTYKRKSRLSNHIRDVHINKKKTFVCSVCGKDKPSAGSLVAHMKRHTGEKHVKCSMCEMSFPSHSEMVAHRRMHTGEKPFHCTVCGNDFSSVSNLKRHVLTHSDLKPYKCNFCDRCYRQAHGLKNHMKQHSNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00336129;
90% Identity: -
80% Identity: -