Camo020507.1
Basic Information
- Insect
- Chymomyza amoena
- Gene Symbol
- -
- Assembly
- GCA_037043745.1
- Location
- JBAMAX010004390.1:201320-205366[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0007 0.065 14.2 4.7 1 19 354 372 354 377 0.92 2 16 4.4e-05 0.0041 17.9 0.2 2 23 385 406 384 406 0.95 3 16 2 1.9e+02 3.3 1.1 2 23 438 459 437 459 0.94 4 16 0.00029 0.027 15.4 1.4 1 23 547 570 547 570 0.97 5 16 0.039 3.6 8.7 0.6 1 19 577 595 577 598 0.94 6 16 0.022 2.1 9.4 3.2 1 23 607 630 607 630 0.92 7 16 2.6e-05 0.0024 18.7 2.1 1 23 636 659 636 659 0.97 8 16 3.8e-05 0.0036 18.1 1.2 2 23 667 688 666 688 0.96 9 16 0.00024 0.022 15.6 0.1 2 21 715 734 714 735 0.94 10 16 0.0089 0.83 10.7 1.1 1 23 785 808 785 808 0.97 11 16 0.059 5.5 8.1 1.5 1 23 845 868 845 868 0.96 12 16 1.3e-05 0.0012 19.6 2.2 2 23 900 922 899 922 0.94 13 16 0.0014 0.13 13.2 0.1 1 23 929 951 929 951 0.98 14 16 0.00022 0.02 15.7 0.9 2 23 958 979 957 979 0.98 15 16 2.3e-05 0.0022 18.8 1.6 1 23 985 1007 985 1007 0.98 16 16 9e-05 0.0083 17.0 6.9 1 23 1013 1035 1013 1035 0.98
Sequence Information
- Coding Sequence
- ATGAGGCTGCCGACAATATGTAGGACGACCTGTGATACAAAACATTGCGATACCTTATACAAACTCGCGACGCCCACAAATGAATATCCCGAAAAAATGTTCTTGGATCTTTTAACAGAAATGACCGGAATTAAGGTTAATGAATCCCATGCGCAAAAACTTCCACAAGTTCTCTGTAGCAGTTGTACGCCGAAATTAATTGATGGCTATTACTATGTTAATCAAGCTCGAACAGCCAATGAAATGTTAATGAATCACTTGCTTAACAACCAGGCAACTGATCCTGCATACTGCGTCCAGAATTGCCGGGTTGAAATCAAAACAGAAGCCAAAGACTATGAAGTAGATAATGCCACAATCTGCATGAATGCACCAGAGTTGGCGCAGTTTCAACAAGCTGAGGACGAGACATTTATATTACCTGATGCAATTAAACACGAACAGGATACGCAAATGTCTTTAGAAAGCCTATTTGAAACAGGCAACGCTACCCAAGGTTATAAAGACGAACTATTAATGTCACCAGAGGCACTAAAACAAGAGCATGATACGGAAATGCCACCTATagaatttaatacaaataaccCTGGGATTGGACACGAGGACGATGATTCTTTGGATCGCTCGGTGAGGTTGATTCCTTATACGGAGCCGCCTAAGTCAAACACATTTCAGCAGTCTGAATTTCTTGGTATGACATATGGAAATGCcttaaatagtaataaaaaagaaatgaagcAAGAGCTGGATGCAGACTTGACCGCTACAGACTTAGACGCCACAGATATATCTAGTCAAGGTTACTACGATGATGAttCGTTGGACCGCTCGGTGAGACTTATACCATGTACAGTGCAAGATTCAGAACTATTTCATCAAGGCGAGCAGCTAATATCATCGAGAGAGCTTCAGCAAGAACAGAATACAGATATATCCTATACAGGATTAGAATCAGCAGATGCCCCTGACCAGGATTTCGTAAACAATAGTTTCTGGAGCTCACTAAATGATTTACAACAGCGCAatctaaagttgaaaaaaaagagagctAAGAAAAGGTATAACTGCTACGAATGTACCAAAAGTTTTAGCCGAGCTGATTACCTAAAACGTCATTGCACAAGCACACATATACCAAAATCGGATTGGCTTCCCTGTACATTATGCGATCTCAAATTTAGCCGAAGTGAAGCACTGCAAGCTCATCTAAAAGATCATCCAGATCCGAAGAGTTTGGCAAGTCGCAATGAAGGGAAAAAGGTCAAGgacataaatttaaatctttgcAAGCCACATGGTTCTAAGCTTATTGAATGCATGATTTGTCACAGCAAATTTGATAGGATAATACAATTACGATTCCACATGGAGCAGCATCctgacatatttaattttgaagatcAAAACAAACTTAGGGCCCATGAGCTTGCGGAATTATTGTATTCTGATTTAATGATACAATCTTCGGAGCATCTGCAAGATCTAATATTTAAGGAGTTAGCATCTGGCGCTTACCAACGATTTTGTTCCATTACGAACCAGTTTGGTTACGAAATAAATTTGGACAGCTCAGAAACCGAAAGCGATGAGGATTATGAAGTGGGTGAAAAAAAGCGCAAAATAACACTAAAAGAGGAATATATGTGCGAACTATGCCAGCAGAGATACCCACGTAAATATCAGCTTTATGATCATCAACGTTTGTCGCATTCATGGTCCGAGGCTCCTCATGTTTGCGGACGCTGTGATATGCGCTTTGTTAGCTTGCAACTACTACAACATCACAACGACTCCCAGTGCAAGAATGCGCAAAAGCGTTTTTCGTGCAGCAAATGTCCCTTGCGATTTCGCTGGAAGCACAACCTTAAGGCGCACTTTCAGGATAATCACATTACAgacCAGACTTTCGAGTGTCACGAATGTAAACGGGTCTTTGACAAAAAGAAATCGCTGACTGTGCATTTGCTAAGTATTCATGCTGACGAATCCAAGCTTATTCCTTGCCAATGGTGCAACCGCAAGTTCTATCGTCGTGACTACTTGGTCAAGCACCTTAAGCGGCACGGCATTAATGAGCAGGACATACCATTGGCCGAGACGCTCATTGCTGCCACATCCAAACCAAATGGTCCAAAGAACATTACCTGCAAGATTTGCAATATACAATTTAGTCGTATAAGTGATTTGCGTTCTCATATACAACAGGATCTTAAGTTGGAACATTCGTTACATCAGAACTTAAAATCATTGGAGAATTACTCCATAACAAATGATTCTGGCTTTGAACTACAGCTGGATGACTCAGAAACAGAAGATGAAGGTAATTTTGTTTCCGATCATGCACCTTCGATTTATGCTTGTGGCGTATGTCAGGTGCAATGTCGCCGCAAATATGAGATGATACAGCATCAAAGCACTATTCATCGCTTTGACAAAATCCCATATAACTGCGAGAGTTGCATATTCAAGTGCGTTTCCAAGaaaataatggaCCATCACAAGCAAGTGCAATGTTTATGCGAGCAAAAGAAACATGTATGTAGCAAATGCAGCTTCAAATTTATGTGGCctgaaaatttggaaaaacatGTACAATCCCAGCACGGTGGCTGGCAAGAGGAAAAGTCTGACAACGCCTCACTAGCGGCTAAATCGGAAACTGAAAAATGTGATTCTGGAGCTGGCATACAAGTGCTCAGTTGCCCTCACTGTGATCGAACCTATAAACGAAAGTCGCGGCTCAGCAATCACATACGGGATGTACATATCAATAAGAAGAAGACGTTCGTATGCTCCGTATGCGGCAAAGATAAGCCTTCGTCTGGTAGTTTAGTTGCACACATGAAGCGTCATACAGGCGAAAAACACGTTAAATGTAATATGTGCGAAATGTCATTTCCTAGTCATTCCGAAATGGTAGCCCATAGACGCATGCATACGGGTGAAAAACCATTCCATTGTACCGTTTGCGGGAATGATTTCTCAAGTGTTTCTAATCTGAAAAGGCACGTTTTGACGCACAGTGATTTAAAACCTTACAAATGTAGTTTTTGTGACAGGTGCTATCGACAGGCCCatggtttaaaaaatcatatgaaaCAACATAGTAATAAGTGA
- Protein Sequence
- MRLPTICRTTCDTKHCDTLYKLATPTNEYPEKMFLDLLTEMTGIKVNESHAQKLPQVLCSSCTPKLIDGYYYVNQARTANEMLMNHLLNNQATDPAYCVQNCRVEIKTEAKDYEVDNATICMNAPELAQFQQAEDETFILPDAIKHEQDTQMSLESLFETGNATQGYKDELLMSPEALKQEHDTEMPPIEFNTNNPGIGHEDDDSLDRSVRLIPYTEPPKSNTFQQSEFLGMTYGNALNSNKKEMKQELDADLTATDLDATDISSQGYYDDDSLDRSVRLIPCTVQDSELFHQGEQLISSRELQQEQNTDISYTGLESADAPDQDFVNNSFWSSLNDLQQRNLKLKKKRAKKRYNCYECTKSFSRADYLKRHCTSTHIPKSDWLPCTLCDLKFSRSEALQAHLKDHPDPKSLASRNEGKKVKDINLNLCKPHGSKLIECMICHSKFDRIIQLRFHMEQHPDIFNFEDQNKLRAHELAELLYSDLMIQSSEHLQDLIFKELASGAYQRFCSITNQFGYEINLDSSETESDEDYEVGEKKRKITLKEEYMCELCQQRYPRKYQLYDHQRLSHSWSEAPHVCGRCDMRFVSLQLLQHHNDSQCKNAQKRFSCSKCPLRFRWKHNLKAHFQDNHITDQTFECHECKRVFDKKKSLTVHLLSIHADESKLIPCQWCNRKFYRRDYLVKHLKRHGINEQDIPLAETLIAATSKPNGPKNITCKICNIQFSRISDLRSHIQQDLKLEHSLHQNLKSLENYSITNDSGFELQLDDSETEDEGNFVSDHAPSIYACGVCQVQCRRKYEMIQHQSTIHRFDKIPYNCESCIFKCVSKKIMDHHKQVQCLCEQKKHVCSKCSFKFMWPENLEKHVQSQHGGWQEEKSDNASLAAKSETEKCDSGAGIQVLSCPHCDRTYKRKSRLSNHIRDVHINKKKTFVCSVCGKDKPSSGSLVAHMKRHTGEKHVKCNMCEMSFPSHSEMVAHRRMHTGEKPFHCTVCGNDFSSVSNLKRHVLTHSDLKPYKCSFCDRCYRQAHGLKNHMKQHSNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00337739;
- 90% Identity
- -
- 80% Identity
- -