Ccos009025.1
Basic Information
- Insect
- Chymomyza costata
- Gene Symbol
- -
- Assembly
- GCA_018150985.1
- Location
- JAECWU010000001.1:26788693-26798172[+]
Transcription Factor Domain
- TF Family
- HMG
- Domain
- HMG_box domain
- PFAM
- PF00505
- TF Group
- Other Alpha-Helix Group
- Description
- High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0031 2.1 8.9 0.6 27 55 2 30 1 36 0.84 2 22 0.046 31 5.2 0.0 8 48 78 114 75 120 0.74 3 22 0.041 28 5.3 0.0 6 48 153 191 151 198 0.78 4 22 0.031 21 5.7 0.0 6 48 229 267 228 274 0.81 5 22 0.041 28 5.3 0.0 6 48 319 357 317 364 0.78 6 22 0.023 15 6.1 0.0 6 48 407 445 405 452 0.77 7 22 0.041 28 5.3 0.0 6 48 495 533 493 540 0.78 8 22 0.031 21 5.7 0.0 8 49 587 624 584 635 0.72 9 22 0.031 21 5.7 0.0 8 49 677 714 674 725 0.72 10 22 0.043 29 5.3 0.0 8 48 767 803 764 811 0.75 11 22 0.041 28 5.3 0.0 6 48 842 880 840 887 0.78 12 22 0.041 28 5.3 0.0 6 48 932 970 930 977 0.78 13 22 0.023 15 6.1 0.0 6 48 1020 1058 1018 1065 0.77 14 22 0.031 21 5.7 0.0 6 48 1096 1134 1095 1141 0.81 15 22 0.019 12 6.4 0.0 16 49 1190 1223 1184 1234 0.83 16 22 0.042 28 5.3 0.0 6 48 1274 1312 1272 1319 0.78 17 22 0.046 31 5.2 0.0 8 48 1364 1400 1361 1407 0.75 18 22 0.031 21 5.7 0.0 6 48 1438 1476 1437 1483 0.81 19 22 0.072 48 4.5 0.0 6 48 1526 1564 1524 1571 0.78 20 22 0.041 28 5.3 0.0 6 48 1614 1652 1612 1659 0.78 21 22 0.11 74 3.9 0.0 17 48 1711 1742 1704 1749 0.83 22 22 0.27 1.8e+02 2.7 0.1 6 47 1789 1826 1787 1828 0.72
Sequence Information
- Coding Sequence
- ATGAATCCAAAGACTTTGGCCAAACAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGAGCAGAAAAACGAATATCGTAAAAAGCACGATGAGAAGTTCCGCCATGAGTGCTACTGCCATTGTTTATTTGAAATTCATTCCACATATGACAGACCCGCAAAGCCTCGCAAGATTAAGAAAGCTCCAAAAGCAGGACAAGACAGCAACCGTTTACCACTTACTAACAACGGATTTCTCAACTACTTGCGCGAAATACATGCTTCGTACAACGATATGAATCCCAAGACTTTGGCCAAACAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGACCAGAAAACGAATATCGTAAAAAGCGCGATTGTGTTCTGCCATGAGGGTCTACCCGCAAAGCCTCGCAAGATTAAGAAAGCTCCAAAAGCAGGACAAGACAGCAACCGTTTACCACTTACTAACAACGGATTTCTCAACTACTTGCGCGAAATACATGCTACGTACAACGATATGAATCCCAAGACTTTGGCCAAACAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGACCAGAAAACGAATATCGTAAAAAGCGCGATTGAGTTCTGCCATGAGGACCCGCAAAGCCTCGCAAGATTAAGAAAGCTCCAAAAGCAGGACAAGACAGCAACCGTTTACCACTTACTAACAAACGGATTTCTCAACTACTTGCGCGAAATACATGCTACGTACAACGATATGAATCCCAAGACTTTGGCCAAACAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGACCAGAAAACGAATATCGTAAAAAGCGCGATTGAGTTCTGCCATGAGGGCTACTGCCATTGTTTATTTGAAATTCATTCCACATATGACAGACCCGCAAAGCCTCGCAAGATTAAGAAAGCTCCAAAAGCAGGACAAGACAGCAACCGTTTACCAATTACCAACAATGGATTTCTCAACTACTTGCGCGAAATACATGCTACGTACAACGATATGAATCCCAAGACTTTGGCCAAACAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGACCAGAAAACGAATATCGTAAAAAGCGCGATTGAGTTCTGCCATGCGGGCTACTGCCATTGTTTATTTGAAATTCATTCCACAAATGACAGACCCGCAAAGCCTCGCAAGATTAAGAAAGCTCCAAAAGCAGGACAAGACCGTTTACCACTTACTAACAACGGATTTCTCAACTACTTGCGCGAAATACGTGCTACGTACAACGATATGAATCCCAAGACTTTGGTCAAACAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGACCAGAAAACGAATATCGTAAAAAGCGCGATTGAGTTCTGCCATGAGGGCTACTGCCATTGTTTATTTGAAATTCATTCCACAAATGACAGACCCGCAAAGCCTCGCAAGATTAAGAAAGCTCCAAAAGCAGGACAAGACCGTTTACCACTTACTAACAACGGATTTCTCAACTACTTGCGCGAAATACATGCTACGTACAACGATATGAATCCCAAGACTTTGGCCAAACAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGACCAGAAAACGAATATCGTAAAAAGCGCGATTGAGTTCTGCCATGAGGGCTACTGCCATTGTTTATTTGAAATTCATTCCACATATGACAGACCCGCAAAGCCTCGCAAGATTAAGAAAGCTCCAAAAGCAGGACAAGACAGCAACCGTTTACCACTTACTAACAACGGATTTCTCAACTACTTGCGCGAAATACATGCTTCGTACAACGATATGAATCCCAAGACTTTGGCCAAACAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGACCAGAAAACGAATATCGTAAAAAGCGCGATTGAGTTCCGCCATGAGGGCTACTGCCATTGTTTATTTGAAATTCATTCCACATATGACAGACCCGCAAAGCCTCGCAAGATTAAGAAAGCTCCAAAAGCAGGACAAGACAGCAACCGTTTACCACTTACTAACAACGGATTTCTCAACTACTTGCGCGAAATACATGCTTCGTACAACGATATGAATCCCAAGACTTTGGCCAAACAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGACCAGAAAACGAATATCGTAAAAAGCGCGATTGAGTTCCGCCATGAGGGCTACTGCCATTGTTTATTTGAAATTCATTCCACATATGACAGACCCGCAAAGCCTCGCAAGATTAAGAAAGCTCCAAAAGCAGGACAAGACAGCAACCGTTTACCACTTACTAACAACGGATTTCTCAACTACTTGCGCGAAATACATGCTTCGTACAACGATATGAATCCCAAGACTTTGGCCAAACAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGACCAGAAAACGAATATCGTAAAAAGCGCGATTGAGTTCTGCCATGAGGGTCTACCCGCAAAGCCGCGCAAGATTAAGAAAGCTCCAAAAGCAGGACAAGACAGCAACCGTTTACCACTTACTAACAACGGATTTCTCAACTACTTGCGCGAAATACATGCTACGTACAACGATATGAATCCCAAGACTTTGGCCAAACAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGACCAGAAAACGAATATCGTAAAAAGCGCGATTGAGTTCTGCCATGAGGGCTACTGCCATTGTTTATTTGAAATTCATTCCACATATGACAGACCCGCAAAGCCTCGCAAGATTAAGAAAGCTCCAAAAGCAGGACAAGACAGCAACCGTTTACCAATTACCAACAATGGATTTCTCAACTACTTGCGCGAAATACATGCTACGTACAACGATATGAATCCCAAGACTTTGGCCAAACAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGACCAGAAAACGAATATCGTAAAAAGCGCGATTGAGTTCTGCCATGCGGGCTACTGCCATTGTTTATTTGAAATTCATTCCACAAATGACAGACCCGCAAAGCCTCGCAAGATTAAGAAAGCTCCAAAAGCAGGACAAGACCGTTTACCACTTACTAACAACGGATTTCTCAACTACTTGCGCGAAATACGTGCTACGTACAACGATATGAATCCCAAGACTTTGGTCAAACAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGACCAGAAAACGAATATCGTAAAAAGCGCGATTGAGTTCTGCCATGAGGACCCGCAAAGCCTCGCAAGATTAAGAAAGCTCCAAAAGCAGGACAAGACAGCAACCGTTTACCACTTACTAACAAACGGATTTCTCAACTACTTGCGCGAAATACATGCTACGTACAACGATATGAATCCCAAGACTTTGGCCAAACAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGACCAGAAAACGAATATCGTAAAAAGCGCGATTGAGTTCTGCCATGAGGGCTACTGCCATTGTTTATTTGAAATTCATTCCACAAATGACAGACCCGCAAAGCCTCGCAAGATTAAGAAAGCTCCAAAAGCAGGACAAGACCGTTTACCACTTACTAACAACGGATTTCTCAACTACTTGCGCAAAATACGTGCTACGTACAACGATATGAATCCCAAGACTTTGGCCAAACAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGACCAGAAAACGAATATCGTAAAAAGCGCGATTGAGTTCCGCCATGAGGGCTACTGCCATTGTTTATTTGAAATTCATTCCACAAATGACAGACCCGCAAAGCCTCGCAAGATTAAGAAAGCTCCAAAAGCAGGACAAGACAGCAACCGTTTACCACTTACTAACAACGGATTTCTCAACTACTTGCGCGAAATACATGCTACGTACAACGATATGAATCCCAAGACTTTGGTCAAACAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGACCAGAAAACGAATATCGTAAAAAGCGCGATTGAGTTCTGCCATGAGGGCTACTGCCATTGTTTATTTGAAATTCATTCCACAAATGACAGACCCGCAAAGCCTCGCAAGATTAAGAAAGCTCCAAAAGCAGGACAAGACCGTTTACCACTTACTAACAACGGATTTCTCAACTACTTGCGCGAAATACATGCTTCGTACAACGATATGAATCCCAAGACTTTGGTCAAACAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGACCAGAAAACGAATATCGTAAAAAGCGCGATTGAGTTCTGCCATGAGGACCCGCAAAGCCTCGCAAGATTAAGAAAGCTCCAAAAGCAGGACAAGACAGCAACCGTTTACCACTTACTAACAAACGGATTTCTCAACTACTTGCGCGAAATACATGCTACGTACAACGATATGAATCCCAAGACTTTGGCCAAACAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGACCAGAAAACGAATATCGTAAAAAGCGCGATTGAGTTCTGCCATGAGGGCTACTGCCATTGTTTATTTGAAATTCATTCCACATATGACAGACCCGCAAAGCCTCGCAAGATTAAGAAAGCTCCAAAAGCAGGACAAGACCGTTTACCACTTACTAACAACGGATTTCTCAACTACTTGCGCGAAATACATGCTACGTACAACGATATGAATCCCAAGACTTTGGCCAAAGAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGACCAGAAAACGAATATCGTAAAAAGCGCGATTGAGTTCTGCCATGAGGGCTACTGCCATTGTTTATTTGAAATTCATTCCACAAATGACAGACCCGCAAAGCCTCGCAAGATTAAGAAAGCTCCAAAAGCAGGACAAGACCGTTTACCACTTACTAACAACGGATTTCTCAACTACTTGCGCGAAATACATGCTACGTACAACGATATGAATCCCAAGACTTTGGCCAAACAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGACCAGAAAACGAATATCGTAAAAAGCGCGATTGAGTTCTGCCATGAGGGCTACTGCCATTGTTTATTTGAAATTCATTCCACATATGACAGACCCGCAAAGCCTCGCAAGATTAAGAAAGCTCCAAAAGCAGGACAAGACAGCAACCGTTTACCAATTACCAACAATGGATTTCCAAACTACTTGCGCGAAATACATGCTACGTACAACGATATGAATCCCAAGACTTTGGCCAAACAGTGCTTCGAGGGCTGGACTGAATTATCCGAGGACCAGAAAACGAATATCGTAAAAAGCGCGATTGAGTTCTGCCATGAGGGCTACTGCCATTGTTTATTTGAAATTCATTCCACATATGACAGACCCGCAAAGAAAGCTCCAAAAGCAGGACAAGACAGCAACCGTTTACCAATTACCAACAATAGATTTCTCAGCTTCTTGCGCGAAATACGTGCTACGTACAACGATATGAATCCCAAGACTTTGGTCAAACAGTTCTTCGAAGGCTGGGCTGAATTATCCCAGGATCGGAAAAACGAATGTCGTTAA
- Protein Sequence
- MNPKTLAKQCFEGWTELSEEQKNEYRKKHDEKFRHECYCHCLFEIHSTYDRPAKPRKIKKAPKAGQDSNRLPLTNNGFLNYLREIHASYNDMNPKTLAKQCFEGWTELSEDQKTNIVKSAIVFCHEGLPAKPRKIKKAPKAGQDSNRLPLTNNGFLNYLREIHATYNDMNPKTLAKQCFEGWTELSEDQKTNIVKSAIEFCHEDPQSLARLRKLQKQDKTATVYHLLTNGFLNYLREIHATYNDMNPKTLAKQCFEGWTELSEDQKTNIVKSAIEFCHEGYCHCLFEIHSTYDRPAKPRKIKKAPKAGQDSNRLPITNNGFLNYLREIHATYNDMNPKTLAKQCFEGWTELSEDQKTNIVKSAIEFCHAGYCHCLFEIHSTNDRPAKPRKIKKAPKAGQDRLPLTNNGFLNYLREIRATYNDMNPKTLVKQCFEGWTELSEDQKTNIVKSAIEFCHEGYCHCLFEIHSTNDRPAKPRKIKKAPKAGQDRLPLTNNGFLNYLREIHATYNDMNPKTLAKQCFEGWTELSEDQKTNIVKSAIEFCHEGYCHCLFEIHSTYDRPAKPRKIKKAPKAGQDSNRLPLTNNGFLNYLREIHASYNDMNPKTLAKQCFEGWTELSEDQKTNIVKSAIEFRHEGYCHCLFEIHSTYDRPAKPRKIKKAPKAGQDSNRLPLTNNGFLNYLREIHASYNDMNPKTLAKQCFEGWTELSEDQKTNIVKSAIEFRHEGYCHCLFEIHSTYDRPAKPRKIKKAPKAGQDSNRLPLTNNGFLNYLREIHASYNDMNPKTLAKQCFEGWTELSEDQKTNIVKSAIEFCHEGLPAKPRKIKKAPKAGQDSNRLPLTNNGFLNYLREIHATYNDMNPKTLAKQCFEGWTELSEDQKTNIVKSAIEFCHEGYCHCLFEIHSTYDRPAKPRKIKKAPKAGQDSNRLPITNNGFLNYLREIHATYNDMNPKTLAKQCFEGWTELSEDQKTNIVKSAIEFCHAGYCHCLFEIHSTNDRPAKPRKIKKAPKAGQDRLPLTNNGFLNYLREIRATYNDMNPKTLVKQCFEGWTELSEDQKTNIVKSAIEFCHEDPQSLARLRKLQKQDKTATVYHLLTNGFLNYLREIHATYNDMNPKTLAKQCFEGWTELSEDQKTNIVKSAIEFCHEGYCHCLFEIHSTNDRPAKPRKIKKAPKAGQDRLPLTNNGFLNYLRKIRATYNDMNPKTLAKQCFEGWTELSEDQKTNIVKSAIEFRHEGYCHCLFEIHSTNDRPAKPRKIKKAPKAGQDSNRLPLTNNGFLNYLREIHATYNDMNPKTLVKQCFEGWTELSEDQKTNIVKSAIEFCHEGYCHCLFEIHSTNDRPAKPRKIKKAPKAGQDRLPLTNNGFLNYLREIHASYNDMNPKTLVKQCFEGWTELSEDQKTNIVKSAIEFCHEDPQSLARLRKLQKQDKTATVYHLLTNGFLNYLREIHATYNDMNPKTLAKQCFEGWTELSEDQKTNIVKSAIEFCHEGYCHCLFEIHSTYDRPAKPRKIKKAPKAGQDRLPLTNNGFLNYLREIHATYNDMNPKTLAKECFEGWTELSEDQKTNIVKSAIEFCHEGYCHCLFEIHSTNDRPAKPRKIKKAPKAGQDRLPLTNNGFLNYLREIHATYNDMNPKTLAKQCFEGWTELSEDQKTNIVKSAIEFCHEGYCHCLFEIHSTYDRPAKPRKIKKAPKAGQDSNRLPITNNGFPNYLREIHATYNDMNPKTLAKQCFEGWTELSEDQKTNIVKSAIEFCHEGYCHCLFEIHSTYDRPAKKAPKAGQDSNRLPITNNRFLSFLREIRATYNDMNPKTLVKQFFEGWAELSQDRKNECR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -