Ccos015844.1
Basic Information
- Insect
- Chymomyza costata
- Gene Symbol
- SMARCC2
- Assembly
- GCA_018150985.1
- Location
- JAECWU010000143.1:2009670-2014532[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7 2e+03 -0.9 0.1 34 43 203 212 202 214 0.85 2 2 1.3e-14 1.5e-11 44.3 0.1 3 44 653 694 651 696 0.95
Sequence Information
- Coding Sequence
- ATGAACACACTAGGTCCTAAAAAGGACGGTAGTCCAAATATCGACTTTTTTCAGTCGTCAGAGACTCTGCAAGGTTTCGAGTCAATACGACAATGGTTACAGAAAAATTGTAAAAAGTACTTGGCACATAGTTCGGAACCTATAACCAAGGAATCTCTATCCCTATTGCTTATACATTTTCTGCAATATGTTGAGGCTAAGTTGGGTAAAAACTCTGCTGAGCCACCGGCGACCAGAATTCCGATGCGTTGCTTTTTGGACTTTAAAAACGGAGGCGGTCTATGTATTATCTTTTCCACCATGTTTCGTTTTCGCGCCGAACAACGTGGCAAGAAATTTGATTTTACCATTGGCAAAAATCCGACACGCAAGGATCCAAACATACAATTGCTTATTGAAATTGAGCAGGCGTTGGTAGAAGCTGATCTTTATCGCATACCTTATATCTATATACGCCCTGAAATTGAGAAGGGGTTTGAGTCGCGTTTGCGCGAAATACTGGATAATCGGCGTGTAGAGATTGTTACCGATGAGGAAGATGCCACGCATATTGTCTATCCTGTTGTAGATCCTCACCCCGATGAGTATGCGCGTCCTATTTTTAAGCGCGGTAATCATGTGATGTTACATTGGTATTACTTTCCGGAGTCGTATGATTCCTGGACTGTGAATAGTTTCGATTTGCCCGATAATATACCGGAGAATCCAGAATCGCCAGCGGAGCGTTGGCGTGTAGCTGCCTCATGGATATTAGACTTGGAGCAATACAACGAGTGGATGGCTGAGGAGGACTATGAAGTCGATGAACAGGGCAAGAAAAAAACGCACAAACAGCGCATGTCTATTGACGATATAATGTCTTTTGGCGATGAAAAGAAAAAACCCAGTACCAGCAGCGGCAAACAAAAGCGGCGCCGTTCGCCCTCACCCGCAACTTCTACATCGAAGCCAGGCAAACGCAAGCGTTCACCAGCTGTCATAAACAAGAAATCGCGCAATGACGATGATGATGAGGATTTAACGCGCGATTTAGATGATCCGCCAGCAGAGCCAAATGTGCAGGAGGTGGTTAAATCAAATACGGCGCTGCAGTCTACCGCCAGTCCAGCGCCAGGTAGTAAATCACGCGCCGATAATGATATGATGCCTATTAAGGGCGGCACCATGACCGATTTGGATGATGAAATGACAGGTGGCAGTGCAGCCCAGGCACTTTCCACTGGTGATGGCGAAAATTCGCAAACTGGTAAGACCAGCGAAAACAGCAATACACAGGAATTCTCTTCCTCGGCCAAAGAAGATATGGAGGATAATGTCACCGAACAGACGCATCATATTATTGTGCCATCGTATTCGGCCTGGTTTGATTACAATTCAATACATGTGATTGAGAAGCGCGCCATGCCGGAGTTCTTTAATAGTAAGAACAAATCTAAAACACCCGAAATTTATATGGCTTATCGAAATTTCATGATTGATACCTATAGATTAAATCCCACGGAGTACTTAACCAGCACCGCTTGTCGTCGTAATTTGGCCGGCGATGTTTGCGCCATAATGCGCGTGCACGCTTTTCTTGAACAGTGGGGTCTGATTAATTATCAAATTGATGCTGACTTGCGCCCCACACCCATGGGACCGCCACCCACTTCACATTTTCACATATTATCCGATACACCTTCAGGGCTGCAGGCCATCAATCCCCAAAAGACGCAGCAACCAACTGCCGCCAAGACGCTACTTGATTTGGACAAAAAACCCTTGGCCAAAGAGGGTTCTGTTGAGAGTGAAAAAACGGGCACTTTGGCTGGTACGCTGGGCATTAAAACTGAAACATTGGAGAATGGTGCTCCCTCTGGTCTAGCATCGGGTGTTAGTCAGTTTGGTCTAAAACTAGATCAATATGCCAAGAAACCTGCAGCTATGAAAAACAGGACTGCAGCCAGTTTATCACGCGAGTGGACGGATCAGGAAACCTTGTTGCTACTTGAAGGACTGGAGATGTACAAGGATGATTGGAACAAGGTGTGCGAGCATGTGGGCACGCGCACGCAGGATGAATGCATTTTACATTTTCTACGGCTACCCATTGAGGATCCCTATTTGGAGGATGATGGTGGCTTTCTCGGACCGCTTGGCTGCCAGCCCATTCCCTTTAGTAAGTCGGGCAATCCTATTATGTCAACGGTGGCATTTTTGGCCTCAGTTGTTGATCCACGTGTTGCTGCAGCTGCTGCTAAAGCTGCTATGGAAGAGTTTGCTGCTATTAAGGATGAGGTGCCAGCCACCATTATGGACAACCATATGAAGAATGTGGAAAAGGCCTCTACTGGTGGTAAATTCAATCCCAACTTTGGCCTGGCTAACAGTGGCATTGCAGGCACAGGTAATGACAAAGAAGATGAGGAGGCCAAGGAAGGCGGCGCTAATGCTGCTTCAATCAACGATGAAGAAATGAAAGATCTAAGCAAGAAAGACGACGATGCCAAGTCCAAAGACAAATCGGATATATCCAATACAAAAACAGACTCATCCACATCAACCCCCAACAACACTGACAAGAAATCAAAAGAAGCTGCGTCAGCTGATAAAGCTGACAAAGCAGACAAATCGAGTAAAGCCCTAAACAAAACGGCTTCCAACTCCTCACCCACAGAGCCTGGCGCAAGCAGCGGCACAGATGTGGACATTAAAACCGAGGACAACAATAGCGGCGATGGTGAGACTAAGGACGGCAGCGATGCCAGCAATGCGGCTGCCAAGGATGCCACTTTTAGCGAGAACAACATGCAAACCGCAGCAGCAGCGGCTTTGGCTTCAGCAGCAGTTAAAGCGAAGCATTTGGCAGCGTTGGAGGAGCGTAAAATCAAATCGCTTGTGGCTCTACTAGTGGAGACCCAAATGAAGAAGCTAGAAATCAAGCTGCGACACTTTGAGGAACTGGAGGCTACCATGGAGCGTGAACGTGAGGGCCTAGAGTATCAACGACAACAGTTGATCACAGAGCGACAGCAATTCCATTTGGAACAGCTCAAGGCGGCAGAGTTTAGGGCACGCCAGCAGGCGCATCATAGAGCACAACAGGATCAAGCAGCTGCCGCCGCTGGCACAATGATGCTGCAGCAGCAACAACATCAGCATCAGCAACAACAGTTGAGTGCACCAACAGCGCAGCATCAGCCGCTGGCACCTCACATAGCAGCGGCCGGTGCACCGCCACCCAATGGCCCACCAGCTGCAGCGCCACCAAGTGCAACCACAGTTGCGCCAGCAGCGTCAACTGCAACAGCCGGCGAACAAACGGCACCAACAGGTCTGCCACAGGCTCCCACGCCAATGGATACCACACCCCCCGCTGCGGCTCCCATAGCCGACACTGCTGGCGTGCCAGCTGCTCCTGCCTCTGTGCCCGGCCAAACATTGGCGCCAGCGACAAGCATTCCTGCTACGGGCCCAGGTGCTGCTCCTGCTCCTCCATCGTAA
- Protein Sequence
- MNTLGPKKDGSPNIDFFQSSETLQGFESIRQWLQKNCKKYLAHSSEPITKESLSLLLIHFLQYVEAKLGKNSAEPPATRIPMRCFLDFKNGGGLCIIFSTMFRFRAEQRGKKFDFTIGKNPTRKDPNIQLLIEIEQALVEADLYRIPYIYIRPEIEKGFESRLREILDNRRVEIVTDEEDATHIVYPVVDPHPDEYARPIFKRGNHVMLHWYYFPESYDSWTVNSFDLPDNIPENPESPAERWRVAASWILDLEQYNEWMAEEDYEVDEQGKKKTHKQRMSIDDIMSFGDEKKKPSTSSGKQKRRRSPSPATSTSKPGKRKRSPAVINKKSRNDDDDEDLTRDLDDPPAEPNVQEVVKSNTALQSTASPAPGSKSRADNDMMPIKGGTMTDLDDEMTGGSAAQALSTGDGENSQTGKTSENSNTQEFSSSAKEDMEDNVTEQTHHIIVPSYSAWFDYNSIHVIEKRAMPEFFNSKNKSKTPEIYMAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQIDADLRPTPMGPPPTSHFHILSDTPSGLQAINPQKTQQPTAAKTLLDLDKKPLAKEGSVESEKTGTLAGTLGIKTETLENGAPSGLASGVSQFGLKLDQYAKKPAAMKNRTAASLSREWTDQETLLLLEGLEMYKDDWNKVCEHVGTRTQDECILHFLRLPIEDPYLEDDGGFLGPLGCQPIPFSKSGNPIMSTVAFLASVVDPRVAAAAAKAAMEEFAAIKDEVPATIMDNHMKNVEKASTGGKFNPNFGLANSGIAGTGNDKEDEEAKEGGANAASINDEEMKDLSKKDDDAKSKDKSDISNTKTDSSTSTPNNTDKKSKEAASADKADKADKSSKALNKTASNSSPTEPGASSGTDVDIKTEDNNSGDGETKDGSDASNAAAKDATFSENNMQTAAAAALASAAVKAKHLAALEERKIKSLVALLVETQMKKLEIKLRHFEELEATMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHHRAQQDQAAAAAGTMMLQQQQHQHQQQQLSAPTAQHQPLAPHIAAAGAPPPNGPPAAAPPSATTVAPAASTATAGEQTAPTGLPQAPTPMDTTPPAAAPIADTAGVPAAPASVPGQTLAPATSIPATGPGAAPAPPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00560967;
- 90% Identity
- iTF_00339079;
- 80% Identity
- -