Ccos010563.1
Basic Information
- Insect
- Chymomyza costata
- Gene Symbol
- Mblk-1_1
- Assembly
- GCA_018150985.1
- Location
- JAECWU010000706.1:8271862-8283981[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-11 2.7e-08 33.4 0.0 1 35 65 100 65 107 0.92 2 3 6.3e-19 1.3e-15 56.9 0.0 1 43 533 576 533 578 0.95 3 3 0.0044 9.2 6.1 0.2 16 30 691 705 686 706 0.91
Sequence Information
- Coding Sequence
- ATGAAGCAAATTTTTAAGCAGCTGGAACCGGAACCAGAATTCCTGAGTTCTACAGCTCTTGTGGGCTCTAAAACAGTACCCAAGTTGTTTCCTAATCGCTACCACTGTTCCTGTCTAACCTCTGCACTCATCTTCTTTTGCAGGACAATATCAGAGTGTGCCACGCCTATACCCGCAGCAAGGCGCAGCTATAGTGAGGATGATCTACAGAGCGCTGTTCAGGATGTGCTGGACCACAAGGTGGGCACACGCAAAGCTGCCAGCCAATACAATGTGCCGCGCTCCACGTTGCGCAACAAGCTGCACAAGATTCAAGCCAAACGCGGCATTGAGCTGTCACATGATCTGGATCTGGATCAGGATGACTCGGCAGATGAATGTGACGATAGCAATGCCTCCACGCCAGTGTACTCCGACTTTGCGCAACGCATAGCAGCTAGCGCGCAGCTGCGCAAGCTTAGCGGGCTGTCCGAGAACAATGGCAGTGAACTGGGTGAGGAACTGGAGCATAGACAGGGCGGCACATCGCCTGGTCTACGCACAGAAAGCGGCACACCTCTGGGCAGCAGCGCTGCGACCGCGGGCAGCAATGCTGCTATTGATCCCAATGTGCTGCTACGCACGCTTATGCTGGCCACCGGCATTGGAGTCATGCCCAAGCTGGACGAGAATCAGACGATAGGTGAGCTCTTTAAGACGGTGCTGCTGGCCAGTAGTGGCAATTCGTTCATTAATGGCGCCTTTGCCAATGCGGCAGTGGCCATGAATGCCAATGCCATGTCAACGGCGGATACTAATATGCTGCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCAAAGTCTGATACACCGGAGACCACCTCATCGCTGGATACTAACGAGGCCTGTGATGATCCCATACTGAAGATTCCGTCCTTCAAGGTTAGCGGCGCCTCAAGTGTTTCACCCTCGCTCTCGAGCTGCCTCAACAACAACAATAATAACAATAATAATAGCAACAGCAACTGCAATAGCAATCGGAATGGCGGTGCCGGCGATCAACGTCCTCATTCGCTTTCACCCATGCTATCCGCTGCGGTGGCAGCAACGGGTTTCCGGCCGCTCAGCTCTTCGCCTACGGCTATACAAAAAATGATGGCCAATACAATACATCGCAAGATTAATGAGCAGAGCAGTCAGGAGGCAGCCATGTTGGGACTCGGCCTGGATGCCTGCCACAAGCGCAACAATGGCAACACCAGCGGCAGCGAGTGCAGCAGCAGCGGCCTAAATGCCAACAGCGGCGGCAGCTACAAAAAGCCCAGCATAAGCGTGGCCAAGGTGGTGGGCGGCACGGATACCTCACGCTTTGGCGCCTCACCCAATCTGCTGGCACAGCAGCATCACCTGCCCACGCATCATGCGCATCAGCTGAGCGCGCAGGATGCAGCAGCGCTAGCAGCCGGCAAGGGCACACGTCCCAAACGCGGCAAGTATCGCAACTATGATCGGGACAGTCTGGTGGAGGCGGTCAAGGCTGTGCAGCGCGGCGAGATGAGCGTGCATCGTGCGGGCAGCTACTATGGCGTGCCGCACTCTACGCTGGAGTACAAAGTCAAGGAGCGGCATTTGATGCGTCCACGCAAACGTGAGCCCAAGCCACAGCCGGATTTGGTGGGTCTGACGGGTGCTGCCAACAAACTTAATCCCGCCAATTTGGTAGCAGGCAATCATTTGGACAAGCTTAAGGCCAGCAGCAGCGGTGCCAATTCCAAGCTGAGCAATGCGCTTAAAAACAATAGTCAAAGCATGGGTGTGGTAGGTGCTGCAGGCGTGCCACCAAATGGCATGAAGCTGCCCATGTTTGAGGCAGCCGGACAGCTGCCTTTTCAGCAAAGCATGTTTTGGCCACCGGCGGGTCTGTTGGATGCCATGCGCCTAAATGCGGGCAATCCCAATGCAATGGCCAATGCCAGCGCACAGCTGAGTCAGCAGCATGCTGCACATGCTCATGGCATGCCGCACAAGGGCGCGCTGGAGTTCCAGGAGAGCGTTTACGATAATATTATACGCAAAAAACTGCAGAGCAATGAGGGCAATGGCAATGCGCTGCTGGATCAGCTGCTGGTCAATAAGACACCGCTGCCGTTTACCAATAATCGCAGCAATGAATATGTGGCGGCGCCCACCTGCTCCACGGGAGGCAGCGAGACAGCACTGCTGGCAGCCAAACGTTTGGGCAGTCCCATGGAAGCCTATGCGGATATAAAGCGTGAACGTTTAAGTCCGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTATGGAAGCCTCACCCAGCTCATCTATATTGCATGAGAAGCTGGCGCAGATCAAGGCCGAGCAGGAATGTCCAAGTGTAGCCGAGGAGCACTTATAG
- Protein Sequence
- MKQIFKQLEPEPEFLSSTALVGSKTVPKLFPNRYHCSCLTSALIFFCRTISECATPIPAARRSYSEDDLQSAVQDVLDHKVGTRKAASQYNVPRSTLRNKLHKIQAKRGIELSHDLDLDQDDSADECDDSNASTPVYSDFAQRIAASAQLRKLSGLSENNGSELGEELEHRQGGTSPGLRTESGTPLGSSAATAGSNAAIDPNVLLRTLMLATGIGVMPKLDENQTIGELFKTVLLASSGNSFINGAFANAAVAMNANAMSTADTNMLQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKSDTPETTSSLDTNEACDDPILKIPSFKVSGASSVSPSLSSCLNNNNNNNNNSNSNCNSNRNGGAGDQRPHSLSPMLSAAVAATGFRPLSSSPTAIQKMMANTIHRKINEQSSQEAAMLGLGLDACHKRNNGNTSGSECSSSGLNANSGGSYKKPSISVAKVVGGTDTSRFGASPNLLAQQHHLPTHHAHQLSAQDAAALAAGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPQPDLVGLTGAANKLNPANLVAGNHLDKLKASSSGANSKLSNALKNNSQSMGVVGAAGVPPNGMKLPMFEAAGQLPFQQSMFWPPAGLLDAMRLNAGNPNAMANASAQLSQQHAAHAHGMPHKGALEFQESVYDNIIRKKLQSNEGNGNALLDQLLVNKTPLPFTNNRSNEYVAAPTCSTGGSETALLAAKRLGSPMEAYADIKRERLSPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMEASPSSSILHEKLAQIKAEQECPSVAEEHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00335799;
- 90% Identity
- -
- 80% Identity
- -